mRNA_L-elsbetiae_contig6147.14716.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6147.14716.1
Unique NamemRNA_L-elsbetiae_contig6147.14716.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6147.14716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6147contigL-elsbetiae_contig6147:3079..3466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6147.14716.1prot_L-elsbetiae_contig6147.14716.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6147 3151..3466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.0649807-UTR-L-elsbetiae_contig6147:3078..31501622816673.0649807-UTR-L-elsbetiae_contig6147:3078..3150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6147 3079..3150 +
1691683729.50503-UTR-L-elsbetiae_contig6147:3078..31501691683729.50503-UTR-L-elsbetiae_contig6147:3078..3150Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6147 3079..3150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.0773697-CDS-L-elsbetiae_contig6147:3150..33591622816673.0773697-CDS-L-elsbetiae_contig6147:3150..3359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6147 3151..3359 +
1691683729.5207555-CDS-L-elsbetiae_contig6147:3150..33591691683729.5207555-CDS-L-elsbetiae_contig6147:3150..3359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6147 3151..3359 +
1622816673.0883274-CDS-L-elsbetiae_contig6147:3384..34661622816673.0883274-CDS-L-elsbetiae_contig6147:3384..3466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6147 3385..3466 +
1691683729.5310845-CDS-L-elsbetiae_contig6147:3384..34661691683729.5310845-CDS-L-elsbetiae_contig6147:3384..3466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6147 3385..3466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6147.14716.1

>prot_L-elsbetiae_contig6147.14716.1 ID=prot_L-elsbetiae_contig6147.14716.1|Name=mRNA_L-elsbetiae_contig6147.14716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
MRGGGVGVRTGPGCCFLIQPGTPRGAGLEREVVHTRTAGRCKSQQRCCAH
ARSCGFVLAVGAWSVTALGHGGGGGGATWARLFKCCVHLNILYIYP*
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mRNA from alignment at L-elsbetiae_contig6147:3079..3466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6147.14716.1 ID=mRNA_L-elsbetiae_contig6147.14716.1|Name=mRNA_L-elsbetiae_contig6147.14716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=388bp|location=Sequence derived from alignment at L-elsbetiae_contig6147:3079..3466+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGACGGAGACGGAGACGAACCACTACTTGCACCGGCTATGGAGACGA
ACCACTACTGCAGTAGGGTAGGATGAGGGGCGGCGGAGTAGGAGTAAGGA
CGGGGCCGGGCTGTTGCTTTCTGATCCAGCCGGGAACACCGCGCGGGGCT
GGTTTGGAAAGAGAGGTTGTTCACACAAGAACTGCGGGGCGTTGCAAGTC
GCAGCAGAGGTGTTGTGCACACGCACGTTCGTGTGGTTTCGTTTTGGCAG
TGGGAGCTTGGTCTGTCACGGCGCTGGGGCAGCAACCAAGGCGGCGGCGG
CGGTAGCGGCGGCGGCGGCGGCGGTGCTACATGGGCGAGACTCTTCAAAT
GTTGTGTGCATCTAAACATATTGTATATTTACCCTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6147:3079..3466+

>mRNA_L-elsbetiae_contig6147.14716.1 ID=mRNA_L-elsbetiae_contig6147.14716.1|Name=mRNA_L-elsbetiae_contig6147.14716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig6147:3079..3466+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGGGCGGCGGAGTAGGAGTAAGGACGGGGCCGGGCTGTTGCTTTCT
GATCCAGCCGGGAACACCGCGCGGGGCTGGTTTGGAAAGAGAGGTTGTTC
ACACAAGAACTGCGGGGCGTTGCAAGTCGCAGCAGAGGTGTTGTGCACAC
GCACGTTCGTGTGGTTTCGTTTTGGCAGTGGGAGCTTGGTCTGTCACGGC
GCTGGGGCAATGAGGGGCGGCGGAGTAGGAGTAAGGACGGGGCCGGGCTG
TTGCTTTCTGATCCAGCCGGGAACACCGCGCGGGGCTGGTTTGGAAAGAG
AGGTTGTTCACACAAGAACTGCGGGGCGTTGCAAGTCGCAGCAGAGGTGT
TGTGCACACGCACGTTCGTGTGGTTTCGTTTTGGCAGTGGGAGCTTGGTC
TGTCACGGCGCTGGGGCACGGCGGCGGCGGCGGCGGTGCTACATGGGCGA
GACTCTTCAAATGTTGTGTGCATCTAAACATATTGTATATTTACCCTTAA
CGGCGGCGGCGGCGGCGGTGCTACATGGGCGAGACTCTTCAAATGTTGTG
TGCATCTAAACATATTGTATATTTACCCTTAA
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