mRNA_L-elsbetiae_contig6140.14712.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6140.14712.1 vs. uniprot
Match: A0A6H5KEK1_9PHAE (Tudor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK1_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 3.570e-21 Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 1 Query: 268 DMSSSLLDMDPSNLLAQVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKS 438 DMS+SLLDMD S L AQVMKREREASQAVGKDYAARP SYKGSLSLKLDRYTQRRKS Sbjct: 521 DMSTSLLDMDTSKLYAQVMKREREASQAVGKDYAARPASYKGSLSLKLDRYTQRRKS 577
BLAST of mRNA_L-elsbetiae_contig6140.14712.1 vs. uniprot
Match: D7FPC2_ECTSI (Tudor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC2_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 3.630e-21 Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 1 Query: 268 DMSSSLLDMDPSNLLAQVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKS 438 DMS+SLLDMD S L AQVMKREREASQAVGKDYAARP SYKGSLSLKLDRYTQRRKS Sbjct: 499 DMSTSLLDMDTSKLYAQVMKREREASQAVGKDYAARPASYKGSLSLKLDRYTQRRKS 555
BLAST of mRNA_L-elsbetiae_contig6140.14712.1 vs. uniprot
Match: A0A485KYT4_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYT4_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 1.960e-10 Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1 Query: 262 QDDMSSSLLDMDPSNLLAQVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKS 438 +DD SS+ L NLLAQV ++ER ++AVGKDYAARP SYKGSLSLK DR+T R++S Sbjct: 388 RDDASSTNL---ADNLLAQVREQERRKAEAVGKDYAARPASYKGSLSLKQDRFTNRKRS 443
BLAST of mRNA_L-elsbetiae_contig6140.14712.1 vs. uniprot
Match: A0A835ZJP1_9STRA (Tudor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJP1_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 2.190e-10 Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 1 Query: 274 SSSLLDMDPSNLLAQVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKS 438 + S+LD +P L AQV++ +R+AS AVGKDYA+RP SYKGSLSLK DR+T RRKS Sbjct: 242 TGSILD-NPDALYAQVVENDRKASTAVGKDYASRPTSYKGSLSLKADRFTVRRKS 295
BLAST of mRNA_L-elsbetiae_contig6140.14712.1 vs. uniprot
Match: A0A7S2W6Z5_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6Z5_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 4.950e-10 Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1 Query: 301 SNLLAQVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKS 438 SN++A+V KR+RE S A GKDYA RP SYKGSLSL LDRYT R+KS Sbjct: 406 SNVMAEVTKRDRERSAAQGKDYAQRPASYKGSLSLALDRYTHRKKS 451
BLAST of mRNA_L-elsbetiae_contig6140.14712.1 vs. uniprot
Match: A0A397AYK9_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AYK9_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 7.020e-10 Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1 Query: 268 DMSSSLLDMDPSNLLAQVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKS 438 D S +L D +L+AQV ++ER ++AVGKDYAARP SYKGSLSLK DR+T R++S Sbjct: 39 DASGALTD----DLMAQVREQERRKAEAVGKDYAARPASYKGSLSLKQDRFTTRKRS 91
BLAST of mRNA_L-elsbetiae_contig6140.14712.1 vs. uniprot
Match: A0A5D6XEX5_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XEX5_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 8.990e-10 Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 Query: 304 NLLAQVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKS 438 +LL QV ++ER ++AVG+DYAARP SYKGSLSLKLDRYT RR+S Sbjct: 362 DLLQQVREKERRKAEAVGRDYAARPASYKGSLSLKLDRYTTRRRS 406
BLAST of mRNA_L-elsbetiae_contig6140.14712.1 vs. uniprot
Match: A0A482SKP9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SKP9_9ARCH) HSP 1 Score: 65.9 bits (159), Expect = 9.340e-10 Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 Query: 301 SNLLAQVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKS 438 ++LL +V++ EREAS AVGK+YA RP SYKGSLSLKLDRYT R+KS Sbjct: 445 TSLLQKVLESEREASAAVGKNYAQRPASYKGSLSLKLDRYTARKKS 490
BLAST of mRNA_L-elsbetiae_contig6140.14712.1 vs. uniprot
Match: A0A2P4YQH6_9STRA (Pre-mRNA-splicing factor 38B (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YQH6_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 9.770e-10 Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 1 Query: 304 NLLAQVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKS 438 +LL QV +RER ++AVG+DYA+RP SYKGSLSLKLDR+T R++S Sbjct: 37 DLLQQVRERERRKAEAVGRDYASRPASYKGSLSLKLDRWTTRKRS 81
BLAST of mRNA_L-elsbetiae_contig6140.14712.1 vs. uniprot
Match: A0A425CRS1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425CRS1_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.020e-9 Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1 Query: 268 DMSSSLLDMDPSNLLAQVMKREREASQAVGKDYAARPVSYKGSLSLKLDRYTQRRKS 438 D S +L D +L+AQV ++ER ++AVGKDYAARP SYKGSLSLK DR+T R++S Sbjct: 60 DASGALTD----DLMAQVREQERRKAEAVGKDYAARPASYKGSLSLKQDRFTTRKRS 112 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6140.14712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6140.14712.1 >prot_L-elsbetiae_contig6140.14712.1 ID=prot_L-elsbetiae_contig6140.14712.1|Name=mRNA_L-elsbetiae_contig6140.14712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp RDRDGRNRRSSRDRDRGSGGGRSREGRRRDSRDRGGGGGGGGGGRGRSRSback to top mRNA from alignment at L-elsbetiae_contig6140:7796..11088- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6140.14712.1 ID=mRNA_L-elsbetiae_contig6140.14712.1|Name=mRNA_L-elsbetiae_contig6140.14712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3293bp|location=Sequence derived from alignment at L-elsbetiae_contig6140:7796..11088- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6140:7796..11088- >mRNA_L-elsbetiae_contig6140.14712.1 ID=mRNA_L-elsbetiae_contig6140.14712.1|Name=mRNA_L-elsbetiae_contig6140.14712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig6140:7796..11088- (Laminarionema elsbetiae ELsaHSoW15)back to top |