mRNA_L-elsbetiae_contig6137.14705.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6137.14705.1
Unique NamemRNA_L-elsbetiae_contig6137.14705.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6137.14705.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 2.240e-100
Identity = 153/235 (65.11%), Postives = 187/235 (79.57%), Query Frame = 1 
Query:  142 FRYLRSRVNEDGELTGETDFRGRAAWACIRRYYWELFDRPGAPFGLKVHLLQAEAMEALLHGRMTWAPRSDHYRLLTSIHHRLLLRVIGYRRKRGAFRQLSYAKALKQIGCQSVEATVWQRRLLFAGALVRQPDGRLPKGLMLGKLVGGENPGPERAPKDWHECVVGDLKAFGCNHGSTAEQPRTFGIPRATWPTAARMEGGRPRYEGVLQGAERFMASWHKEEDEASRRRVMKR 846
            FRYL   VNE G+LT E + R +AAWACI+RY  ELFDRPGAPF LK  LLQAEA+EALL+G MTW+PR +HY +L + HHRLLLRVIGYRRKRG +RQLSYA+ALK++GCQSVEATV QRRLLFAGA+ RQPDGRLPK LM G+LVGGE+PG     ++W  C+  D+K F   +GST ++P  FG+P+  W  AA++EGG P + GVLQGAERFMASWHK ++EA+R+R +KR
Sbjct:   76 FRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEANRQRAIKR 310
[Close]
BLAST of mRNA_L-elsbetiae_contig6137.14705.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE)

HSP 1 Score: 317 bits (812), Expect = 4.010e-98
Identity = 153/235 (65.11%), Postives = 185/235 (78.72%), Query Frame = 1 
Query:  142 FRYLRSRVNEDGELTGETDFRGRAAWACIRRYYWELFDRPGAPFGLKVHLLQAEAMEALLHGRMTWAPRSDHYRLLTSIHHRLLLRVIGYRRKRGAFRQLSYAKALKQIGCQSVEATVWQRRLLFAGALVRQPDGRLPKGLMLGKLVGGENPGPERAPKDWHECVVGDLKAFGCNHGSTAEQPRTFGIPRATWPTAARMEGGRPRYEGVLQGAERFMASWHKEEDEASRRRVMKR 846
            FRYL   +NE G+LT E + R +AAWACIRRY  ELFDRPGAPF LK  LLQAEA+ ALL+G MTW+PR DHYRLL + HHRLLLRVIGYRRK G +RQLSYA+ALK++GCQSVEATV QRRLLFAGA+ RQPDGRLPK LM G+LVGGE+PG     ++W  C+  D+K F   +GST ++P  FG+P+  W  AA++EGG P + GVLQGAERF ASWHK +++ASR+R +KR
Sbjct:  198 FRYLGGLINEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVAALLYGCMTWSPRRDHYRLLQTTHHRLLLRVIGYRRKGGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFTASWHKGKEKASRQRAIKR 432
[Close]
BLAST of mRNA_L-elsbetiae_contig6137.14705.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 3.200e-97
Identity = 158/235 (67.23%), Postives = 186/235 (79.15%), Query Frame = 1 
Query:  142 FRYLRSRVNEDGELTGETDFRGRAAWACIRRYYWELFDRPGAPFGLKVHLLQAEAMEALLHGRMTWAPRSDHYRLLTSIHHRLLLRVIGYRRKRGAFRQLSYAKALKQIGCQSVEATVWQRRLLFAGALVRQPDGRLPKGLMLGKLVGGENPGPERAPKDWHECVVGDLKAFGCNHGSTAEQPRTFGIPRATWPTAARMEGGRPRYEGVLQGAERFMASWHKEEDEASRRRVMKR 846
            FRYL   VNE G+LT E + R +AAWACIRRY  ELFDRPGAPF LK  LLQAEA+EALL+G MTW+PR +HY +L + HHRLLLRVIGYRRKRG +RQLSYA+ALK++GCQSVEATV QRRLLFAGA+ RQPDGRLPK LM G+LVGGENPG     ++W  C+  DLK F   HGST ++   FGIP+  W  AA++EGG P + GVLQGAERFMASWHK E++ASR+R +KR
Sbjct:  359 FRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 593
[Close]
BLAST of mRNA_L-elsbetiae_contig6137.14705.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 4.950e-96
Identity = 154/235 (65.53%), Postives = 187/235 (79.57%), Query Frame = 1 
Query:  142 FRYLRSRVNEDGELTGETDFRGRAAWACIRRYYWELFDRPGAPFGLKVHLLQAEAMEALLHGRMTWAPRSDHYRLLTSIHHRLLLRVIGYRRKRGAFRQLSYAKALKQIGCQSVEATVWQRRLLFAGALVRQPDGRLPKGLMLGKLVGGENPGPERAPKDWHECVVGDLKAFGCNHGSTAEQPRTFGIPRATWPTAARMEGGRPRYEGVLQGAERFMASWHKEEDEASRRRVMKR 846
            FRYL   VNE G+LT E + R +AAWACIRRY  ELFDRPGAPF LK  LLQAEA+EALL+G MTW+PR +HY +L + HHRLLLRVIGYRRKRG +RQLSYA+ALK++GCQSVEATV QRRLLFAGA+ RQPDGRLPK LM G+LVGGE+PG     ++W  C+  D+K F   +GST ++P  FG+P+  W  AA++EGG P + GVLQGA+RFMASWHK E++ASR+R +KR
Sbjct:  471 FRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGADRFMASWHKGEEKASRQRAIKR 705
[Close]
BLAST of mRNA_L-elsbetiae_contig6137.14705.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 2.410e-95
Identity = 154/235 (65.53%), Postives = 186/235 (79.15%), Query Frame = 1 
Query:  142 FRYLRSRVNEDGELTGETDFRGRAAWACIRRYYWELFDRPGAPFGLKVHLLQAEAMEALLHGRMTWAPRSDHYRLLTSIHHRLLLRVIGYRRKRGAFRQLSYAKALKQIGCQSVEATVWQRRLLFAGALVRQPDGRLPKGLMLGKLVGGENPGPERAPKDWHECVVGDLKAFGCNHGSTAEQPRTFGIPRATWPTAARMEGGRPRYEGVLQGAERFMASWHKEEDEASRRRVMKR 846
            FRYL   VNE G+LT E + R +AAWACI+RY  ELFDRPGAPF LK  LLQAEA+EALL+G MTW+PR +HY +L + HHRLLLRVIGYRRKRG +RQLSYA+ALK++GCQSVEATV QRRLLFAGA+ RQPDGRLPK LM G+LVGGE PG     ++W  C+  D+K F   +GST ++P  FG+P+  W  AA++EGG P + GVLQGAERFMASWHK ++EASR+R +KR
Sbjct:  527 FRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 761
[Close]
BLAST of mRNA_L-elsbetiae_contig6137.14705.1 vs. uniprot
Match: A0A6H5KX41_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX41_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 1.660e-92
Identity = 153/235 (65.11%), Postives = 186/235 (79.15%), Query Frame = 1 
Query:  142 FRYLRSRVNEDGELTGETDFRGRAAWACIRRYYWELFDRPGAPFGLKVHLLQAEAMEALLHGRMTWAPRSDHYRLLTSIHHRLLLRVIGYRRKRGAFRQLSYAKALKQIGCQSVEATVWQRRLLFAGALVRQPDGRLPKGLMLGKLVGGENPGPERAPKDWHECVVGDLKAFGCNHGSTAEQPRTFGIPRATWPTAARMEGGRPRYEGVLQGAERFMASWHKEEDEASRRRVMKR 846
            FRYL   VNE G+LT E + R +AAWAC +RY  ELFDRPGAPF LK  LLQAEA+EALL+G MTW+PR +HY +L + HHRLLLRVIGYRRKRG +RQLSYA+ALK++GCQSVEATV QRRLLFAGA+ RQPDGRLPK LM G+LVGGE+PG     ++W  C+  D+K F   +GST ++P  FG+P+  W  AA++EGG P + GVLQGAERFMASWHK ++EASR+R +KR
Sbjct:  800 FRYLGGLVNEHGDLTREINHRSKAAWACNKRYTTELFDRPGAPFSLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1034
[Close]
BLAST of mRNA_L-elsbetiae_contig6137.14705.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 7.520e-92
Identity = 154/235 (65.53%), Postives = 187/235 (79.57%), Query Frame = 1 
Query:  142 FRYLRSRVNEDGELTGETDFRGRAAWACIRRYYWELFDRPGAPFGLKVHLLQAEAMEALLHGRMTWAPRSDHYRLLTSIHHRLLLRVIGYRRKRGAFRQLSYAKALKQIGCQSVEATVWQRRLLFAGALVRQPDGRLPKGLMLGKLVGGENPGPERAPKDWHECVVGDLKAFGCNHGSTAEQPRTFGIPRATWPTAARMEGGRPRYEGVLQGAERFMASWHKEEDEASRRRVMKR 846
            FRYL   VNE G+LT E + R +AAWACI+RY  ELFDRPGAPF LK  LLQAEA+EALL+G MTW+PR +HY +L + HHRLLLRVIGYRRKRG +RQLSYA+ALK++GCQSVEATV QRRLLFAGA+ RQPDGRLPK LM G+LVGGE+PG     ++W  C+  D+K F   +GST ++P  FG+P+  W  AA++EGG P + GVLQGAERFMASWHK ++EASR+R +KR
Sbjct: 1143 FRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1377
[Close]
BLAST of mRNA_L-elsbetiae_contig6137.14705.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 9.350e-92
Identity = 153/235 (65.11%), Postives = 186/235 (79.15%), Query Frame = 1 
Query:  142 FRYLRSRVNEDGELTGETDFRGRAAWACIRRYYWELFDRPGAPFGLKVHLLQAEAMEALLHGRMTWAPRSDHYRLLTSIHHRLLLRVIGYRRKRGAFRQLSYAKALKQIGCQSVEATVWQRRLLFAGALVRQPDGRLPKGLMLGKLVGGENPGPERAPKDWHECVVGDLKAFGCNHGSTAEQPRTFGIPRATWPTAARMEGGRPRYEGVLQGAERFMASWHKEEDEASRRRVMKR 846
            FRYL   VNE G+LT E + R +AAWACI+RY  ELFDRPGAPF LK  LLQAEA+EALL+G MTW+PR +HY +L + HHRLLLRVIGYRRKRG +RQLSYA+ALK++GCQSVEATV QRRLLFAGA+ RQPDGRLPK LM G+LVGGE+PG     ++W  C+  D+K F   +GST ++   FG+P+  W  AA++EGG P + GVLQGAERFMASWHK ++EASR+R +KR
Sbjct:  856 FRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKQSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1090
[Close]
BLAST of mRNA_L-elsbetiae_contig6137.14705.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 1.790e-91
Identity = 154/235 (65.53%), Postives = 187/235 (79.57%), Query Frame = 1 
Query:  142 FRYLRSRVNEDGELTGETDFRGRAAWACIRRYYWELFDRPGAPFGLKVHLLQAEAMEALLHGRMTWAPRSDHYRLLTSIHHRLLLRVIGYRRKRGAFRQLSYAKALKQIGCQSVEATVWQRRLLFAGALVRQPDGRLPKGLMLGKLVGGENPGPERAPKDWHECVVGDLKAFGCNHGSTAEQPRTFGIPRATWPTAARMEGGRPRYEGVLQGAERFMASWHKEEDEASRRRVMKR 846
            FRYL   VNE G+LT E + R +AAWACI+RY  ELFDRPGAPF LK  LLQAEA+EALL+G MTW+PR +HY +L + HHRLLLRVIGYRRKRG +RQLSYA+ALK++GCQSVEATV QRRLLFAGA+ RQPDGRLPK LM G+LVGGE+PG     ++W  C+  D+K F   +GST ++P  FG+P+  W  AA++EGG P + GVLQGAERFMASWHK ++EASR+R +KR
Sbjct: 1347 FRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1581
[Close]
BLAST of mRNA_L-elsbetiae_contig6137.14705.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 1.230e-89
Identity = 168/296 (56.76%), Postives = 201/296 (67.91%), Query Frame = 1 
Query:  142 FRYLRSRVNEDGELTGETDFRGRAAWACIRRYYWELFDRPGAPFGLKVHLLQAEAMEALLHGRMTWAPRSDHYRLLTSIHHRLLLRVIGYRRKRGAFRQLSYAKALKQIGCQSVEATVWQRRLLFAGALVRQPDGRLPKGLMLGKLVGGENPGPERAPKDWHECVVGDLKAFGCNHGSTAEQPRTFGIP-------RATWPTAARMEGGRPRYEGVLQGAERFMASWHKEEDEASRRRVMKRDKRAYDQQTNG--DEDDRNCTRRMQEGGDGGSSAICRGLKS*LPPPSPCTSVHH 1002
            FRYL   VNE G+LT E ++R R AWAC+RRY  ELFDRP AP  LK+ LLQAEAMEALL+G MTW+P S HY+ L SIHHRLLLRVIGY+RK+  +RQLSYA+ LK+  CQSVEAT+ QRRLLFAGAL RQPDGRLPK LM G+L GGE        ++W +CV+ DL AFG +HGST   P   GIP       +  W  AA++EGG P +  VLQGAERFM SWH++E+EASR+R +KR+ +   Q   G    D R+   R Q   DG S AI   L   LP P P T +HH
Sbjct:  430 FRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPSRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKRNHKPPTQGWGGMGAGDGRDGEGRKQTRRDGPSGAIRAELNFFLPIPPPPT-LHH 724
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6137.14705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWS4_9PHAE2.240e-10065.11Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KLC4_9PHAE4.010e-9865.11Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE3.200e-9767.23Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ91_9PHAE4.950e-9665.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JEX7_9PHAE2.410e-9565.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KX41_9PHAE1.660e-9265.11Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K319_9PHAE7.520e-9265.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE9.350e-9265.11Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM6_9PHAE1.790e-9165.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS82_9PHAE1.230e-8956.76Reverse transcriptase domain-containing protein (F... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6137contigL-elsbetiae_contig6137:5560..7510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.6
Seed ortholog evalue5.5e-09
Seed eggNOG ortholog13735.ENSPSIP00000001160
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48HSD@7711,49FJM@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons2
Model size1874
Cds size843
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6137.14705.1prot_L-elsbetiae_contig6137.14705.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6137 6545..7387 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.9014254-UTR-L-elsbetiae_contig6137:5559..62361622816671.9014254-UTR-L-elsbetiae_contig6137:5559..6236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6137 5560..6236 -
1691683728.7437353-UTR-L-elsbetiae_contig6137:5559..62361691683728.7437353-UTR-L-elsbetiae_contig6137:5559..6236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6137 5560..6236 -
1622816671.9135754-UTR-L-elsbetiae_contig6137:6313..65441622816671.9135754-UTR-L-elsbetiae_contig6137:6313..6544Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6137 6314..6544 -
1691683728.756122-UTR-L-elsbetiae_contig6137:6313..65441691683728.756122-UTR-L-elsbetiae_contig6137:6313..6544Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6137 6314..6544 -
1622816671.9408016-UTR-L-elsbetiae_contig6137:7387..75101622816671.9408016-UTR-L-elsbetiae_contig6137:7387..7510Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6137 7388..7510 -
1691683728.7754679-UTR-L-elsbetiae_contig6137:7387..75101691683728.7754679-UTR-L-elsbetiae_contig6137:7387..7510Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6137 7388..7510 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.9285905-CDS-L-elsbetiae_contig6137:6544..73871622816671.9285905-CDS-L-elsbetiae_contig6137:6544..7387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6137 6545..7387 -
1691683728.7653866-CDS-L-elsbetiae_contig6137:6544..73871691683728.7653866-CDS-L-elsbetiae_contig6137:6544..7387Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6137 6545..7387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6137.14705.1

>prot_L-elsbetiae_contig6137.14705.1 ID=prot_L-elsbetiae_contig6137.14705.1|Name=mRNA_L-elsbetiae_contig6137.14705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=281bp
MPRQLSFRYLRSRVNEDGELTGETDFRGRAAWACIRRYYWELFDRPGAPF
GLKVHLLQAEAMEALLHGRMTWAPRSDHYRLLTSIHHRLLLRVIGYRRKR
GAFRQLSYAKALKQIGCQSVEATVWQRRLLFAGALVRQPDGRLPKGLMLG
KLVGGENPGPERAPKDWHECVVGDLKAFGCNHGSTAEQPRTFGIPRATWP
TAARMEGGRPRYEGVLQGAERFMASWHKEEDEASRRRVMKRDKRAYDQQT
NGDEDDRNCTRRMQEGGDGGSSAICRGLKS*
back to top

mRNA from alignment at L-elsbetiae_contig6137:5560..7510-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6137.14705.1 ID=mRNA_L-elsbetiae_contig6137.14705.1|Name=mRNA_L-elsbetiae_contig6137.14705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1951bp|location=Sequence derived from alignment at L-elsbetiae_contig6137:5560..7510- (Laminarionema elsbetiae ELsaHSoW15)
CGCCGACGGACGGGCGAGGATGATGGCCATTATCGTGGAGGTGTTCGGGA
AGTTTGGGCTGTCGGTATCGGAGAAGAAGACAGAGACTCTCCTGATGGCG
CGTAAAGGAGAAACGGCAGAGGTATGCCCAGACAACTGAGTTTCCGCTAC
TTGAGGAGCCGCGTCAACGAGGATGGTGAACTCACAGGAGAGACCGACTT
CCGGGGCAGAGCAGCGTGGGCGTGCATTAGGAGATATTACTGGGAACTCT
TCGACAGACCGGGAGCACCGTTTGGACTCAAGGTCCATCTGCTTCAGGCG
GAGGCGATGGAGGCACTGCTGCACGGCCGCATGACATGGGCCCCACGTAG
CGACCACTACCGGCTATTGACGTCGATTCACCACCGACTACTCCTGAGAG
TTATTGGGTACAGGCGTAAGCGCGGTGCCTTCCGGCAGCTTTCCTACGCC
AAGGCCCTGAAGCAGATAGGGTGCCAGAGCGTGGAAGCCACTGTCTGGCA
GCGGCGTCTGCTGTTTGCCGGAGCCCTTGTAAGACAACCGGACGGACGAC
TCCCGAAAGGACTGATGCTCGGCAAGCTGGTGGGAGGGGAGAACCCGGGC
CCGGAACGCGCGCCAAAGGACTGGCATGAGTGCGTGGTCGGCGACTTGAA
GGCGTTCGGGTGCAACCACGGCTCTACGGCCGAACAGCCACGAACGTTCG
GGATCCCCAGAGCCACATGGCCGACAGCAGCGAGGATGGAGGGGGGAAGG
CCACGGTACGAGGGGGTGCTGCAGGGAGCTGAGAGGTTTATGGCCTCCTG
GCACAAGGAGGAGGACGAGGCCAGCCGACGACGGGTGATGAAACGAGACA
AAAGGGCCTACGACCAACAGACGAACGGGGACGAAGACGATCGAAACTGC
ACGAGACGAATGCAAGAGGGCGGAGACGGAGGCAGCAGCGCAATATGTCG
CGGACTGAAATCTTGACTACCCCCCCCCTCCCCCTGTACCAGCGTGCACC
ACCGCCGGAATGTTTGGTACTGATTCTGTCTAGGGCTTTTTTTACGTGTG
TTTGTTTGTTTGCACTTCCGCTTTGCAACTGGTCCGATTCCTTTCCCCCT
ATTTAGTACTATATGTAAGGTTATAATAGATGGGGAGGACTAGGTGGATT
GGCCTGACCGGCGAGAACCCGGCGAGGAACACCCCGGCATTGTGGAGGTA
CCAAGATAGGATGTTGGATGCTCCAGTTTTGTTTTTACCTCACACAGCGT
GTAAAGGAGAGCGAAGGGCTCCAGACTATCTGTGCCGTTTCTTTTGTTTT
TATGCTTTGCTGACCCTTCGGGTCCACCTTGTATTTTTCAGTATTATACC
CTTTCTTGGGGTAAGTTAGCCTGTGACCACAGGAATCGACCGCGTCGGAG
TATGGACGTACGGAGGTACTGGATGGAGAGATCGGAACGGTTTTTAATGT
GAAGAAAACAACAACAACGTACACACATAGGCTGTAGGCTGCTGCCATTT
TTGTGGGGTGTGAGAAATCGGATTAGCATAATTCAACGCGATTTTTATTA
GGAAAGGCAGAACTGGGCGGGCGGATGCACCCATAACTCCTACGAAGCAT
GCTAGATTTGTAAATTTACCAGTTTATGCACTAGCACATCTATGTATTTA
GTACATACTCCGAGTAACAGATACGGGAGCTGTGGTCGTTATGAGCACCC
CGGCTATTTGAACTTTCTGTCCCCTTCCGCTTAAACAGCTTGAACAGCCT
AGTGTTCGAACGCCAGTTTTTCAGCCTCTTTGCCTGCAAACTCAGAGCAG
TTTTTTCAACGAATCACCGGCCAACGGCTAAAACAGCGCTGTTTTTTTGG
CGTCACGAACGCACAACCCCCCACTCGATAACTCTTCGCTTATTTCGACC
ACCTCGAGACAGCTGAAAGCAAGGGTAGTTTACCTGTAAGGTCGAGATGG
T
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6137:5560..7510-

>mRNA_L-elsbetiae_contig6137.14705.1 ID=mRNA_L-elsbetiae_contig6137.14705.1|Name=mRNA_L-elsbetiae_contig6137.14705.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1686bp|location=Sequence derived from alignment at L-elsbetiae_contig6137:5560..7510- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCAGACAACTGAGTTTCCGCTACTTGAGGAGCCGCGTCAACGAGGA
TGGTGAACTCACAGGAGAGACCGACTTCCGGGGCAGAGCAGCGTGGGCGT
GCATTAGGAGATATTACTGGGAACTCTTCGACAGACCGGGAGCACCGTTT
GGACTCAAGGTCCATCTGCTTCAGGCGGAGGCGATGGAGGCACTGCTGCA
CGGCCGCATGACATGGGCCCCACGTAGCGACCACTACCGGCTATTGACGT
CGATTCACCACCGACTACTCCTGAGAGTTATTGGGTACAGGCGTAAGCGC
GGTGCCTTCCGGCAGCTTTCCTACGCCAAGGCCCTGAAGCAGATAGGGTG
CCAGAGCGTGGAAGCCACTGTCTGGCAGCGGCGTCTGCTGTTTGCCGGAG
CCCTTGTAAGACAACCGGACGGACGACTCCCGAAAGGACTGATGCTCGGC
AAGCTGGTGGGAGGGGAGAACCCGGGCCCGGAACGCGCGCCAAAGGACTG
GCATGAGTGCGTGGTCGGCGACTTGAAGGCGTTCGGGTGCAACCACGGCT
CTACGGCCGAACAGCCACGAACGTTCGGGATCCCCAGAGCCACATGGCCG
ACAGCAGCGAGGATGGAGGGGGGAAGGCCACGGTACGAGGGGGTGCTGCA
GGGAGCTGAGAGGTTTATGGCCTCCTGGCACAAGGAGGAGGACGAGGCCA
GCCGACGACGGGTGATGAAACGAGACAAAAGGGCCTACGACCAACAGACG
AACGGGGACGAAGACGATCGAAACTGCACGAGACGAATGCAAGAGGGCGG
AGACGGAGGCAGCAGCGCAATATGTCGCGGACTGAAATCTTGAATGCCCA
GACAACTGAGTTTCCGCTACTTGAGGAGCCGCGTCAACGAGGATGGTGAA
CTCACAGGAGAGACCGACTTCCGGGGCAGAGCAGCGTGGGCGTGCATTAG
GAGATATTACTGGGAACTCTTCGACAGACCGGGAGCACCGTTTGGACTCA
AGGTCCATCTGCTTCAGGCGGAGGCGATGGAGGCACTGCTGCACGGCCGC
ATGACATGGGCCCCACGTAGCGACCACTACCGGCTATTGACGTCGATTCA
CCACCGACTACTCCTGAGAGTTATTGGGTACAGGCGTAAGCGCGGTGCCT
TCCGGCAGCTTTCCTACGCCAAGGCCCTGAAGCAGATAGGGTGCCAGAGC
GTGGAAGCCACTGTCTGGCAGCGGCGTCTGCTGTTTGCCGGAGCCCTTGT
AAGACAACCGGACGGACGACTCCCGAAAGGACTGATGCTCGGCAAGCTGG
TGGGAGGGGAGAACCCGGGCCCGGAACGCGCGCCAAAGGACTGGCATGAG
TGCGTGGTCGGCGACTTGAAGGCGTTCGGGTGCAACCACGGCTCTACGGC
CGAACAGCCACGAACGTTCGGGATCCCCAGAGCCACATGGCCGACAGCAG
CGAGGATGGAGGGGGGAAGGCCACGGTACGAGGGGGTGCTGCAGGGAGCT
GAGAGGTTTATGGCCTCCTGGCACAAGGAGGAGGACGAGGCCAGCCGACG
ACGGGTGATGAAACGAGACAAAAGGGCCTACGACCAACAGACGAACGGGG
ACGAAGACGATCGAAACTGCACGAGACGAATGCAAGAGGGCGGAGACGGA
GGCAGCAGCGCAATATGTCGCGGACTGAAATCTTGA
back to top