mRNA_L-elsbetiae_contig6135.14702.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6135.14702.1 vs. uniprot
Match: A0A6H5KLQ2_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ2_9PHAE) HSP 1 Score: 1001 bits (2587), Expect = 0.000e+0 Identity = 750/1490 (50.34%), Postives = 871/1490 (58.46%), Query Frame = 1
Query: 124 RTISNRATCPATAGSPTQRDVPYDIGECVIHSSFPPAPPPRALELVKEEVHRALEAFSTRPLKGETSARCPADLLRPFDVSRDGRVTYHEFQAGMLGLGIALTNHEAGALARAVDREDSGLVDRGRFEAAATQDWGQGG---GECEEATSAPERFEGDCPEEQ--------QQQAGSRNGTNDASCARIGDNQYADGEERIAPXXXXXRSESPNLVRQASTSELATTSSRVRSPPTVSFDHWQRHRTTIRGAGSEDNEVTA--PVATALSATRDGSRKNSSNSDHCETANKSNSXXXXXXXXXXXXXDKRPL------PQKRVNSLNTLRSLLRQDGVFDYADTANNGDYRRHSSFDSGSGGWERRGRRPQQQEQSHSRRLHEDQRGLRTARGGDGGGGELRRNSGNVEHRHPRDESAPAFGSSYAGPKRGHVGFNRGGRRQSKD--GTGGGHAVA---EAQNLERRRQAIATRAESILRLRSRGDLVGLRRAMSKADPSASGVVSQREMEQVVLRRFGTGLGNDEASELAARYRKEFNGRSMVDYDRLFDSLDAKEAGLFDQAVAPSSSTPPYSGHGCERGRXXXXXXXQRQPQQRLLSRDSSGTDKRRPASTAAVAGSRRRGSSLAPPAAGARTRYRQRRCNRRGVPKCNAPAEELAGGTVPAEDSQLVRRARAKTLALLDRHGTRSVDCVFGLVDPAQTQSISSGELREGLRILGGSDTLSEIEHQALFRDICKGHDRIKYR---------------------------------------ELLDTLRMAEAAENRERTQRKLAHQAGLPTSDRGSASHWCHSDVLDWDVPPAGGG-RGDPSEVGLTGGRQHKESRRQALVFERLRESVRQIQKGRNSAGPVFDMFQQGGRGRGEARKNGTAASYAGG------------NDDKDPDDDQRIPPPLSPAALRAGLGSLGVPLGDKDFIALMATTDPEQRGEVSYPTFCEALKLHRLRG--------GNGGE-----------PAAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------AMELVPPPDAHTDLEGGVFHLNPATHGCANPNFTTSMIPA--GGRDGRGAQQSRADTYRPKRRQS-----GGNAF---MKAHEQTLLVVGDG--DRAGRWNETGAEAERRFCRSLGGKMRRSKSLSSCYARGRGGWDNLGTPSLRGGAPSPSPSTTSAAAATWADTNASIITDGSGNRRGRCHIPRNSDLGFGSERMRSQLSGDGDQDHRRRGGRR-----------SSSGGVADAGSRRTRSLSLGAERRYGNWARSSVQHLLRQDGWLGVRSPRPTGPSSTTGEPSS---GYSSE---GKGQHRRRAAAETAVQQTARPRSSPGRRVSNRNNFSDGFVVLNSARHPAQTRERRPSPYATDADFSSATAPLLARATRGVAGRPLDNFSRTHPRAVADVRARNSEPEDWGGTITGGGGKAG--GEFSSTLRWG 4188
R ISN+ATC AGSPT+RDVPYD+GEC+IHS+ PP PPPRALELVKEEVHRAL+AFST+P+KGE A P+DLLRPFDVS+DGRVTY EF+ G+LGLGI LT HEA ALA+ VDRE +GLVDRG FEAAAT+DWG G G TSAP G E Q + S +D S R G+ YA GE P SE+P +RQ S E SR R P T+SFD WQ++ + + + V A P +T S G + N H + + S XXXXXXXXXXX D QK + SL TLRSLL++DGVFD + D S+ S S G E RGRR +++ Q S + Q G R + GG GG G+ R + VEHR R+E A TG + V EA + R QA+A RAE IL+LRSRGDLVGLRRA+SKADPSASGV+S+REME+V+LRRFGTGL +DEA LAA YRK+FNGRSMVDY RLFD+++ +E G++ + V PS SG GC + QQ SRD G + R AS +A RRRGS AAG RTR+ QRR RRGVP +A + G PAE SQLVRRARAKTLALLDRHGTRSVDCVFGLVD A TQ+++SGELRE LRILGGSDTLSEIEH+ALF+ I KG DRI YR ELLDTLR +E AE+RERTQRKL HQAGLPTS RGSA HW HSDVLDWD PPAGGG R VGL GGRQHKESRRQALVF+RLR+ V+QIQ+ +NSA PVFDMF+Q RG AR G + A N+D DPD R P PLSP+ALRAGLGSLGVPLGD+DF L+A TDP++RG+VSYPTFCEAL LH LRG +G E P R XXXXXXXXXXXXXXXXXXXXXXX AMEL PP DA DLEGGVFH+N AT GCANPNFTT+M+PA GG + R D+YRPKRRQS GG K+H QTLLVVG G DR G ++TG EAERRF + LG KMR W+D N T G G+RRGR H PR+SDLGFGSERMRS D D+D R GGRR + + G G RR RSLSLGAERRYG+WARSSVQHLLRQDGWLG RS R PS TG ++ G+SSE G+G+ R AETA + R RSSP R +S N +DG V +N+ R+ AQTRERRP+PYATDAD SS + P + +H W TGG G G+FS TLRWG
Sbjct: 48 RQISNQATCSTAAGSPTRRDVPYDVGECIIHSAPPPVPPPRALELVKEEVHRALKAFSTKPVKGEPKAPLPSDLLRPFDVSKDGRVTYREFRTGILGLGIGLTAHEAEALAQVVDREGTGLVDRGPFEAAATRDWGSSGRDGGWQGRPTSAPGSVPGAVAEPQIGGGALHSPGEHTSHPQVDDGSIVRDGEKGYAGGEVLPPPPTP---SEAPEPLRQWSRLETTGRPSRNRGPSTLSFDCWQQNANRRNESNNAADAVVAKTPASTGSSI---GRSDGNVNGHHKHSRDTSTXXXXXXXXXXXXNSDYNTHNNNLQPSQKYLQSLQTLRSLLQRDGVFDEVKSTPIADETNKSNERSLSFGTEIRGRRRERRLQEQS----QHQAGSRLS-GGGGGDGKQRVDLSRVEHRRSREEDCRADSPXXXXXXXXXXXXXXXXXXXXXXXXSTGKTNVVVSDTEAPDHLARAQAVAARAEKILQLRSRGDLVGLRRAVSKADPSASGVISRREMERVILRRFGTGLEDDEARHLAACYRKDFNGRSMVDYGRLFDNMEVQEGGVYGRGVTPSPGPSKSSGRGCW------------EDQQHSSSRDGGGGTRARSASVSAAGEXRRRGSRPMRAAAGGRTRHSQRRYWRRGVP--DAADDNFVRGGAPAEASQLVRRARAKTLALLDRHGTRSVDCVFGLVDQAHTQTVNSGELREALRILGGSDTLSEIEHRALFKGISKGRDRIHYRDKTYPNTQRYSRGPAASVVATTCFIYTLFFGTPLVLHKQELLDTLRASEVAEHRERTQRKLQHQAGLPTSGRGSAIHWRHSDVLDWDAPPAGGGGRKGSRGVGLKGGRQHKESRRQALVFQRLRDGVKQIQEKQNSAWPVFDMFRQ----RGRARAGGYCDAAAXXXXXXXXXXXXTINNDDDPD---RTPSPLSPSALRAGLGSLGVPLGDEDFDTLIAATDPDRRGKVSYPTFCEALDLHPLRGDPPDAHRTASGSEEEERPSSAPPVPTKSRQHNRQXXXXXXXXXXXXXXXXXXXXXXXXXGGYIRRRAMELAPPADAREDLEGGVFHVNEATCGCANPNFTTTMVPASTGGGCRANNNRPRPDSYRPKRRQSPAPAPGGTLTGVRTKSHGQTLLVVGSGGGDRVGLRDQTGLEAERRFRQGLGIKMR-----------------------------------------AWSDDN---NTGGRGHRRGRSHTPRDSDLGFGSERMRSTSRCDDDEDCRGGGGRRERRSGSVGWRRTGTNGDVGPGLRRVRSLSLGAERRYGDWARSSVQHLLRQDGWLGARSFRLDPPSPVTGSRNTAGGGHSSEQHGGRGKSRW-PRAETAFEMR-RSRSSP-RDLSQHKNSADGSV-MNNRRYSAQTRERRPTPYATDADLSSVCRVM-----------PAATAATSHSAVALTTEGYGR----WRKEATGGSRSGGERGDFSPTLRWG 1442
BLAST of mRNA_L-elsbetiae_contig6135.14702.1 vs. uniprot
Match: D8LB86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB86_ECTSI) HSP 1 Score: 914 bits (2362), Expect = 9.940e-306 Identity = 637/1290 (49.38%), Postives = 750/1290 (58.14%), Query Frame = 1
Query: 1 RRQMSETLDRIPQLMHELHNQR-----ASDFTSSYRDQHLTQIERQRTISNRATCPATAGSPTQRDVPYDIGECVIHSSFPPAPPPRALELVKEEVHRALEAFSTRPLKGETSARCPADLLRPFDVSRDGRVTYHEFQAGMLGLGIALTNHEAGALARAVDREDSGLVDRGRFEAAATQDWGQGGGECE----EATSAPERFEGDCPEEQQQQAGSRNGTNDASCARIGDNQYA-DGEERIAPXXXXXR----SESPNLVRQASTSELATTSSRVRSPPTVSFDHWQRHRTTIRGAGSEDNEVTAPVATALSATRDGSRK-----------------------NSSNSDHCETANKSNSXXXXXXXXXXXXXDKRPLPQKRVNSLNTLRSLLRQDGVFDYADTANNGDYRRHSSFDSGSGGWERRGRRPQQQEQSHSRRLHEDQRGLRTARGGDG------GGGELRRNSGNVEHRHPRDESAPAFGSSYAGPKRGHVGFNRGGRRQSKDGTGGGHAVAEAQNLER-----RRQAIATRAESILRLRSRGDLVGLRRAMSKADPSASGVVSQREMEQVVLRRFGTGLGNDEASELAARYRKEFNGRSMVDYDRLFDSLDAKEAGLFDQAVAPSSSTPPYSGHGCERGRXXXXXXXQRQPQQRLLSRDSSGTDKRRPASTAAVAGSRRRGSSLAPPAAGARTRYRQRRCNRRGVPKCNAPAEELAGGTVPAEDSQLVRRARAKTLALLDRHGTRSVDCVFGLVDPAQTQSISSGELREGLRILGGSDTLSEIEHQALFRDICKGHDRIKYRELLDTLRMAEAAENRERTQRKLAHQAGLPTSDRGSASHWCHSDVLDWDVPPAGGG-RGDPSEVGLTGGRQHKESRRQALVFERLRESVRQIQKGRNSAGPVFDMFQQGGRGR----GEARKNGTAASYAGGNDDKDPDDDQRIPPPLSPAALRAGLGSLGVPLGDKDFIALMATTDPEQRGEVSYPTFCEALKLHRLRG--------GNGGEPAAQ-----------------------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMELVPPPDAHTDLEGGVFHLNPATHGCANPNFTTSMIPA--GGRDGRGAQQSRADTYRPKRRQS-----GGNAF---MKAHEQTLLVVGDG--DRAGRWNETGAEAERRFCRSLGGKMRRSKSLSSCYARGRGGWDNLGTPSLRGGAPSPSPSTTSAAAATWADTNASIITDGSGNRRGRCHIPRNSDLGFGSERMRSQLSGDGDQDHRRR 3582
R +++ TLD+IP+LMH+LHN ++ TSSYRDQ+LT+ E+QR ISN+ TC AGSPT RDVPYDIGE +IHS+ PP PPPRALELVKEEVHRAL+AFST+P+KGE A P+DLLRPFDVS+DGRVTY E + G+LGLGI LT EA LA+ VDRE +GLVDRG FEAAAT+DWG GGG TSAP R G E Q + + AS ++ D + A DGE+ A SE+P +RQ S SE SR P T+SFD+WQ++ + + N V SSNSD+ T N + + L QK + SL TLRSLL+ D VFD + D + S S G E RGRR +++ Q S + Q GLR + G G+ R +S VEHR R+E A G+ + E R +++A RAESILRLRSRGDLVGLRRA+SKADPSASGV+S+REME+V+LRRFGTGL + EA LAARYRK+FNGRSMVDY RLFDSL+ KE LF + V S SG GC + QQR S R A T+ RRRGS AAGARTR+ QRR RRGVP +A A + G PAE+SQLVRRARAKTLALLDRHGT SVDCVFGLVD A TQ++SSGELRE LRILGGSDTLSEIEH+ALF+ I KG DR+ YRELLDTLR +E AE+RERTQRKL HQAGLPTS RGSA HW HSDVLDWD PPAGGG R VGL GGRQHKESRRQALVF+RLR+ VRQIQ+ +NSAGPVFDMF++ GRGR +A A + +G + +D R PPPLSP+ALRAGLGSLGVPLG++DF+ L+A TDP++RGEV+YPTFCEAL LH LRG +G E + XXXXXXXXX XX AMEL PP D DLEGGVFH+N AT+GC NPNFTT+M+PA GG R D YRPKRRQS GG K+H QTLLVVG G DR G ++TG EAERRF + LG KMR DN P+ ++ G GNRRGR H PR+SDLGFGSERMRS S DG H RR
Sbjct: 41 RPEINGTLDQIPRLMHKLHNYNNERTGSTRVTSSYRDQYLTRKEQQR-ISNQVTCSTAAGSPTHRDVPYDIGEYIIHSAPPPVPPPRALELVKEEVHRALKAFSTQPVKGEPKAPLPSDLLRPFDVSKDGRVTYRELRTGILGLGIGLTAREAEELAQVVDREGTGLVDRGHFEAAATRDWGSGGGGDGGWQGRPTSAPGRVXGAVAESQSESGALHSPGEHASHPQVDDGRIAHDGEKGCAGGEVLPPPPTPSEAPEPLRQWSRSETTGRPSRNHGPSTLSFDYWQQNANRRNDSNNAANAVVTNTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPKSSNSDY-NTHN-----------------NNQQLSQKYIQSLQTLRSLLQLDRVFDEVKSTPIADETNKPNRRSLSFGTETRGRRCERRRQEQS----QHQSGLRPSGXXXXXXSCGVGDGKQRVDSTKVEHRRFREEDGRADSPXXXXXXXXXXXXXXXXXXXXXXXXXTGNTSVVVSDTEAPDHLARARSVAARAESILRLRSRGDLVGLRRAVSKADPSASGVISRREMERVILRRFGTGLEDHEARHLAARYRKDFNGRSMVDYGRLFDSLEVKEGDLFGRGVTSSPGPSTSSGRGCW------------EAQQRSSSXXXXXXXXARSAPTSTAGEGRRRGSRPMRAAAGARTRHSQRRYWRRGVP--DAAAADFVRGGAPAEESQLVRRARAKTLALLDRHGTPSVDCVFGLVDQAHTQTVSSGELREALRILGGSDTLSEIEHRALFKGISKGRDRVLYRELLDTLRASEVAEHRERTQRKLQHQAGLPTSGRGSAIHWRHSDVLDWDAPPAGGGDRKGSCGVGLKGGRQHKESRRQALVFQRLRDGVRQIQEKQNSAGPVFDMFRRRGRGRTGGYSDAAATVAAPTTSGNGTMNNDNDPVRTPPPLSPSALRAGLGSLGVPLGNEDFVTLIAATDPDRRGEVTYPTFCEALDLHPLRGDPSDAHRTASGSEEQERPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDAGKGRREGXXGYARRRAMELAPPADTREDLEGGVFHVNEATYGCDNPNFTTTMVPASIGGGCKANNNHPRPDAYRPKRRQSPAPAPGGTLTGIRTKSHGQTLLVVGSGGGDRVGLRDQTGLEAERRFRQGLGVKMRAWSG------------DNNTDPTP-------------------------VLNGGRGNRRGRSHTPRDSDLGFGSERMRS-TSSDGVSKHCRR 1255 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6135.14702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6135.14702.1 >prot_L-elsbetiae_contig6135.14702.1 ID=prot_L-elsbetiae_contig6135.14702.1|Name=mRNA_L-elsbetiae_contig6135.14702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1430bp MSETLDRIPQLMHELHNQRASDFTSSYRDQHLTQIERQRTISNRATCPATback to top mRNA from alignment at L-elsbetiae_contig6135:4149..11138+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6135.14702.1 ID=mRNA_L-elsbetiae_contig6135.14702.1|Name=mRNA_L-elsbetiae_contig6135.14702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6990bp|location=Sequence derived from alignment at L-elsbetiae_contig6135:4149..11138+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6135:4149..11138+ >mRNA_L-elsbetiae_contig6135.14702.1 ID=mRNA_L-elsbetiae_contig6135.14702.1|Name=mRNA_L-elsbetiae_contig6135.14702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=8580bp|location=Sequence derived from alignment at L-elsbetiae_contig6135:4149..11138+ (Laminarionema elsbetiae ELsaHSoW15)back to top |