mRNA_L-elsbetiae_contig613.14696.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig613.14696.1
Unique NamemRNA_L-elsbetiae_contig613.14696.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig613.14696.1 vs. uniprot
Match: A0A6H5LQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ53_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.520e-18
Identity = 72/131 (54.96%), Postives = 85/131 (64.89%), Query Frame = 1 
Query:   46 MN*MTSGRKRVKRSQKAKELRAKHFSKVAADRVRAPVSQQVRAGGSLSSRQSADVSRLNSRWTQQ-PTTVQAPFPKPGRRAAASGSSPAPPAATEGIDAAYPASAATPVGPGTTTPDSGSLLPGLLELDVT 435
            MN MTSGRKRV+RSQK KELRAKHF+KVAADR RAPVS+  RA  S  + QSADVSRL SRW Q  P+T + P      +   +GS+ A     E  D+A P S  T +G GT TPD     PG L+L+VT
Sbjct:    1 MNWMTSGRKRVQRSQKVKELRAKHFAKVAADRARAPVSRPARASSSTLN-QSADVSRLKSRWIQPLPSTHKVP----ALQRTVAGSAAAEHTTAE--DSASPPSNVTTLGSGT-TPD---FQPGTLDLEVT 120
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig613.14696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LQ53_9PHAE4.520e-1854.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig613contigL-elsbetiae_contig613:33207..34474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size436
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig613.14696.1prot_L-elsbetiae_contig613.14696.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig613 33207..34420 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.0433545-CDS-L-elsbetiae_contig613:33206..334431622816671.0433545-CDS-L-elsbetiae_contig613:33206..33443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig613 33207..33443 -
1691683728.146859-CDS-L-elsbetiae_contig613:33206..334431691683728.146859-CDS-L-elsbetiae_contig613:33206..33443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig613 33207..33443 -
1622816671.0536423-CDS-L-elsbetiae_contig613:33956..340861622816671.0536423-CDS-L-elsbetiae_contig613:33956..34086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig613 33957..34086 -
1691683728.156926-CDS-L-elsbetiae_contig613:33956..340861691683728.156926-CDS-L-elsbetiae_contig613:33956..34086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig613 33957..34086 -
1622816671.0648494-CDS-L-elsbetiae_contig613:34406..344201622816671.0648494-CDS-L-elsbetiae_contig613:34406..34420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig613 34407..34420 -
1691683728.1700866-CDS-L-elsbetiae_contig613:34406..344201691683728.1700866-CDS-L-elsbetiae_contig613:34406..34420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig613 34407..34420 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.0776596-UTR-L-elsbetiae_contig613:34420..344741622816671.0776596-UTR-L-elsbetiae_contig613:34420..34474Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig613 34421..34474 -
1691683728.1784062-UTR-L-elsbetiae_contig613:34420..344741691683728.1784062-UTR-L-elsbetiae_contig613:34420..34474Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig613 34421..34474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig613.14696.1

>prot_L-elsbetiae_contig613.14696.1 ID=prot_L-elsbetiae_contig613.14696.1|Name=mRNA_L-elsbetiae_contig613.14696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MTSGRKRVKRSQKAKELRAKHFSKVAADRVRAPVSQQVRAGGSLSSRQSA
DVSRLNSRWTQQPTTVQAPFPKPGRRAAASGSSPAPPAATEGIDAAYPAS
AATPVGPGTTTPDSGSLLPGLLELDVT
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mRNA from alignment at L-elsbetiae_contig613:33207..34474-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig613.14696.1 ID=mRNA_L-elsbetiae_contig613.14696.1|Name=mRNA_L-elsbetiae_contig613.14696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1268bp|location=Sequence derived from alignment at L-elsbetiae_contig613:33207..34474- (Laminarionema elsbetiae ELsaHSoW15)
GCATGCGGCATCAGCTGCTCGGCACGCAGCACACCTGCTGGAAGAATGAA
TTGAATGACATCCGGAAGGTGAGGGATGTTTAGTCAGCGTCTCGAGGGGG
GTTTGCCATCTTCGGTCTCGCAACGGCAGGTTTGGTTTTGGACCTCTGTC
GAACGACTGAAAATTCGAATCTCAACATCACACATTTTCCCTCCACGTTT
CCGTTGGTTGGTTGGGCCCACCGAGTGTGTTATGCCCCCGTCGAACACGA
GTACTTCCATCGTATTATCGGCTCTGGGCGCTCGTGGACCCCAAATGCGA
TGCGTCGTGTGTGTGTTTGGGGGTTGTGATAAAACCCATATCTAGACTAG
AATACCTCCCCCCGTGTTTGTTGCCGATTGGCGCACAGAAAGCGTGTCAA
GAGATCTCAGAAGGCCAAGGAGCTACGAGCGAAGCACTTCTCGAAGGTGG
CTGCTGATCGAGTCAGAGCACCAGTCTCGCAGCAGGTCCGCGCAGGGGGA
AGCTTGTCGTCACGCCAGGTGCCAAATTCTCTAGTCCGCTAACATAGAGT
TTGGTTCAACAACTGCGGTTGGTTGCAGGCAGCTCTTCACCGCACCTACA
GCTTGTTTCATCATTTGGACGAAAGCTGGGTAGAAAGGTATCTATGTACA
ACGGCCTGAAACGAATACGAAGTGTTTTGGCCGACAAAGATCGCCGCCCT
TCCGCGTACCGCTTTTGCACTCCTTGTTGGAACCAGCGGAGTTAATGTAG
AAGTATGTACGTACTGCCGTAGGTCTGGCCGTGCGTGCCCCCAAGAGTTC
ACGCCCCCGAGCACAGCAGTGCACGCAAGCATCAGGTTTTCCCCCACCGC
AAAGAACTCGCGGAATAGAGACTAGCCCCGCTCGTTTCTTTTTCGCAGTT
TTCCCGAACGGTTTACTGGCGCAAGAAAGCCCGAACATACAACCAATCCT
GATCACGAAAGGACGCCATCTCTCCCCTCCTCCCTCCCCCGCCCCGACGC
CTTTCCCTTCCCCGCTTCGCCGTAATCACAGTCCGCCGATGTGTCGAGGC
TCAACTCTCGGTGGACCCAGCAGCCCACGACAGTACAAGCTCCTTTCCCA
AAGCCCGGACGGCGTGCTGCTGCTTCGGGTTCCTCACCAGCGCCTCCTGC
GGCTACGGAAGGGATAGATGCTGCCTACCCGGCCTCCGCCGCGACCCCGG
TGGGACCAGGCACCACCACCCCGGACAGTGGCTCCCTGCTGCCGGGGCTA
CTTGAACTCGACGTCACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig613:33207..34474-

>mRNA_L-elsbetiae_contig613.14696.1 ID=mRNA_L-elsbetiae_contig613.14696.1|Name=mRNA_L-elsbetiae_contig613.14696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig613:33207..34474- (Laminarionema elsbetiae ELsaHSoW15)
ATGACATCCGGAAGATGACATCCGGAAGAAAGCGTGTCAAGAGATCTCAG
AAGGCCAAGGAGCTACGAGCGAAGCACTTCTCGAAGGTGGCTGCTGATCG
AGTCAGAGCACCAGTCTCGCAGCAGGTCCGCGCAGGGGGAAGCTTGTCGT
CACGCCAGAAAGCGTGTCAAGAGATCTCAGAAGGCCAAGGAGCTACGAGC
GAAGCACTTCTCGAAGGTGGCTGCTGATCGAGTCAGAGCACCAGTCTCGC
AGCAGGTCCGCGCAGGGGGAAGCTTGTCGTCACGCCAGTCCGCCGATGTG
TCGAGGCTCAACTCTCGGTGGACCCAGCAGCCCACGACAGTACAAGCTCC
TTTCCCAAAGCCCGGACGGCGTGCTGCTGCTTCGGGTTCCTCACCAGCGC
CTCCTGCGGCTACGGAAGGGATAGATGCTGCCTACCCGGCCTCCGCCGCG
ACCCCGGTGGGACCAGGCACCACCACCCCGGACAGTGGCTCCCTGCTGCC
GGGGCTACTTGAACTCGACGTCACATCCGCCGATGTGTCGAGGCTCAACT
CTCGGTGGACCCAGCAGCCCACGACAGTACAAGCTCCTTTCCCAAAGCCC
GGACGGCGTGCTGCTGCTTCGGGTTCCTCACCAGCGCCTCCTGCGGCTAC
GGAAGGGATAGATGCTGCCTACCCGGCCTCCGCCGCGACCCCGGTGGGAC
CAGGCACCACCACCCCGGACAGTGGCTCCCTGCTGCCGGGGCTACTTGAA
CTCGACGTCACA
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