mRNA_L-elsbetiae_contig613.14694.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig613.14694.1
Unique NamemRNA_L-elsbetiae_contig613.14694.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig613.14694.1 vs. uniprot
Match: D8LT82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT82_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.020e-6
Identity = 50/118 (42.37%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:   88 DDSAKWRRRYEHLAGLLAERTKRSSEKTDRLATPTKT------KTSPRSTRTLI----TYASSGGSTISQQETRPRSVTASSTSSIGVQGDLVPTTKPSAVVDGSSNTTPRPPSPPLA 411
            DD+  WRRRYEHLAGLLA +TK++S    RLAT  +T      ++SPR  R ++    T  S G  T S +E  P S   S+  ++   G   P + P    + SSNT+PRPPSP +A
Sbjct:  815 DDTGTWRRRYEHLAGLLAVQTKQNSAMASRLATSGRTGPSSSRRSSPR--RRIVPPAETPLSLGTPTASPEERLPHSTGPST--AVSKNGGAKPRSSPKRA-NRSSNTSPRPPSPAIA 927
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig613.14694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT82_ECTSI1.020e-642.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig613contigL-elsbetiae_contig613:8167..9121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size487
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.9550214-CDS-L-elsbetiae_contig613:8168..84831622816670.9550214-CDS-L-elsbetiae_contig613:8168..8483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig613 8169..8483 -
1691683728.0938632-CDS-L-elsbetiae_contig613:8168..84831691683728.0938632-CDS-L-elsbetiae_contig613:8168..8483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig613 8169..8483 -
1622816670.966049-CDS-L-elsbetiae_contig613:8953..91211622816670.966049-CDS-L-elsbetiae_contig613:8953..9121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig613 8954..9121 -
1691683728.108441-CDS-L-elsbetiae_contig613:8953..91211691683728.108441-CDS-L-elsbetiae_contig613:8953..9121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig613 8954..9121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig613.14694.1prot_L-elsbetiae_contig613.14694.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig613 8169..9121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig613.14694.1

>prot_L-elsbetiae_contig613.14694.1 ID=prot_L-elsbetiae_contig613.14694.1|Name=mRNA_L-elsbetiae_contig613.14694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
EPPPPDVAVAPSPPPAAMAASPPSLPEVVDDSAKWRRRYEHLAGLLAERT
KRSSEKTDRLATPTKTKTSPRSTRTLITYASSGGSTISQQETRPRSVTAS
STSSIGVQGDLVPTTKPSAVVDGSSNTTPRPPSPPLAGKPTSLETEGEGK
AGQAAPVALVS
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mRNA from alignment at L-elsbetiae_contig613:8167..9121-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig613.14694.1 ID=mRNA_L-elsbetiae_contig613.14694.1|Name=mRNA_L-elsbetiae_contig613.14694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=955bp|location=Sequence derived from alignment at L-elsbetiae_contig613:8167..9121- (Laminarionema elsbetiae ELsaHSoW15)
GAACCACCGCCGCCGGATGTTGCCGTCGCCCCTTCCCCGCCACCGGCTGC
GATGGCGGCTTCGCCGCCGTCCCTGCCCGAAGTTGTCGACGACAGCGCAA
AGTGGCGCCGCCGCTACGAGCACCTGGCGGGGCTGTTGGCCGAGCGGACG
AAACGAAGCAGCGAGAAGGTGAGCATTGGGGAAAGGACAGGGGGGCCAAT
CGATCATCATCAACTGTTTTATGTTTTGTTGGAAGCCTACACATGTGTAT
GCTGAACGTTGTGTGTCGGACTCCGGACAGTCTCGGCGAAGCTTTGGCTC
GGCGGGAAGGGGATGGGGGTAGGGGTGAGAGTAGTAGGTGCGAGTTCGGG
TGGGAACGCAAGGCGGGGGTATCGTTGTGAATGAAAGGCGCCACTTATTT
TGGCATTGTCGCGTGTTCTGTCCGGGCGGTGTTGTCCATTGACTACCAAA
GAGTGACTCCCATGCAAACATTAAGTTGGTCGCTACTAACGCAAGGCATC
CATGATCCAACGAGACGGGCTTTCTTGTTGCTTTGCGTGTACGGCCATGG
TCGATATGTCATGCTCTACGTCGCTAATCGATATTGTTTGTTTGTTGTGC
CGCTCTGGCGATCGGGGGCGTGCGACGATCAATCGAAGACGGACCGACTG
GCCACTCCTACCAAGACAAAGACATCACCACGATCGACACGCACTTTGAT
AACATATGCGTCTTCTGGAGGATCCACAATAAGTCAGCAGGAAACACGCC
CGCGCTCTGTCACTGCGTCTTCTACCTCTTCCATTGGCGTGCAAGGCGAC
TTGGTGCCTACGACGAAGCCGAGTGCAGTTGTCGACGGATCTTCAAACAC
CACGCCGCGCCCACCGTCTCCTCCTCTGGCCGGCAAACCCACCAGCCTTG
AGACAGAAGGGGAAGGAAAAGCCGGACAAGCCGCTCCCGTGGCACTCGTT
TCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig613:8167..9121-

>mRNA_L-elsbetiae_contig613.14694.1 ID=mRNA_L-elsbetiae_contig613.14694.1|Name=mRNA_L-elsbetiae_contig613.14694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig613:8167..9121- (Laminarionema elsbetiae ELsaHSoW15)
GAACCACCGCCGCCGGATGTTGCCGTCGCCCCTTCCCCGCCACCGGCTGC
GATGGCGGCTTCGCCGCCGTCCCTGCCCGAAGTTGTCGACGACAGCGCAA
AGTGGCGCCGCCGCTACGAGCACCTGGCGGGGCTGTTGGCCGAGCGGACG
AAACGAAGCAGCGAGAAGGAACCACCGCCGCCGGATGTTGCCGTCGCCCC
TTCCCCGCCACCGGCTGCGATGGCGGCTTCGCCGCCGTCCCTGCCCGAAG
TTGTCGACGACAGCGCAAAGTGGCGCCGCCGCTACGAGCACCTGGCGGGG
CTGTTGGCCGAGCGGACGAAACGAAGCAGCGAGAAGACGGACCGACTGGC
CACTCCTACCAAGACAAAGACATCACCACGATCGACACGCACTTTGATAA
CATATGCGTCTTCTGGAGGATCCACAATAAGTCAGCAGGAAACACGCCCG
CGCTCTGTCACTGCGTCTTCTACCTCTTCCATTGGCGTGCAAGGCGACTT
GGTGCCTACGACGAAGCCGAGTGCAGTTGTCGACGGATCTTCAAACACCA
CGCCGCGCCCACCGTCTCCTCCTCTGGCCGGCAAACCCACCAGCCTTGAG
ACAGAAGGGGAAGGAAAAGCCGGACAAGCCGCTCCCGTGGCACTCGTTTC
GACGGACCGACTGGCCACTCCTACCAAGACAAAGACATCACCACGATCGA
CACGCACTTTGATAACATATGCGTCTTCTGGAGGATCCACAATAAGTCAG
CAGGAAACACGCCCGCGCTCTGTCACTGCGTCTTCTACCTCTTCCATTGG
CGTGCAAGGCGACTTGGTGCCTACGACGAAGCCGAGTGCAGTTGTCGACG
GATCTTCAAACACCACGCCGCGCCCACCGTCTCCTCCTCTGGCCGGCAAA
CCCACCAGCCTTGAGACAGAAGGGGAAGGAAAAGCCGGACAAGCCGCTCC
CGTGGCACTCGTTTCG
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