mRNA_L-elsbetiae_contig6090.14631.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6090.14631.1
Unique NamemRNA_L-elsbetiae_contig6090.14631.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6090.14631.1 vs. uniprot
Match: A0A6H5J638_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J638_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.760e-51
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 2 
Query:    2 GVRFRKEEQLLKAEEEAKRKMEGADARRKEHRRGIVRKANDANSKVEEVIFMNKLTVEDLKITLQMRLAEVDRRIQLGRQEQQQQARRQQLLMGISDRQRKRTRDKAAQMSERRLEAESV 361
            GVRFRKEEQLLKAEEEAKRKMEGADARRKEHRRGIVRKANDANSKVEEV+FMNKLTVEDLKITLQM+LAEVDRRIQ GR      ARRQQLL GISDRQRKRTRDKAAQMSERRLEAES 
Sbjct:  108 GVRFRKEEQLLKAEEEAKRKMEGADARRKEHRRGIVRKANDANSKVEEVLFMNKLTVEDLKITLQMKLAEVDRRIQSGR------ARRQQLLAGISDRQRKRTRDKAAQMSERRLEAESA 221
[Close]
BLAST of mRNA_L-elsbetiae_contig6090.14631.1 vs. uniprot
Match: D7G5K8_ECTSI (Scaper protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K8_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.790e-51
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 2 
Query:    2 GVRFRKEEQLLKAEEEAKRKMEGADARRKEHRRGIVRKANDANSKVEEVIFMNKLTVEDLKITLQMRLAEVDRRIQLGRQEQQQQARRQQLLMGISDRQRKRTRDKAAQMSERRLEAESV 361
            GVRFRKEEQLLKAEEEAKRKMEGADARRKEHRRGIVRKANDANSKVEEV+FMNKLTVEDLKITLQM+LAEVDRRIQ GR      ARRQQLL GISDRQRKRTRDKAAQMSERRLEAES 
Sbjct: 1211 GVRFRKEEQLLKAEEEAKRKMEGADARRKEHRRGIVRKANDANSKVEEVLFMNKLTVEDLKITLQMKLAEVDRRIQSGR------ARRQQLLAGISDRQRKRTRDKAAQMSERRLEAESA 1324
[Close]
BLAST of mRNA_L-elsbetiae_contig6090.14631.1 vs. uniprot
Match: A0A7S2WA51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WA51_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 6.620e-5
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:   59 KMEGADARRKEHRRGIVRKANDANSKVEEVIFMNKLTVEDLKITLQMRLAEVDR 220
            K+  ++ R  +H + I RKA + NSKVEEVIF+N LT + ++ TLQ RL EV+R
Sbjct:  463 KLSASETRHAQHIQAIARKAANENSKVEEVIFINGLTADAVRATLQQRLVEVER 516
[Close]
BLAST of mRNA_L-elsbetiae_contig6090.14631.1 vs. uniprot
Match: A0A7S2WB00_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB00_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 6.850e-5
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:   59 KMEGADARRKEHRRGIVRKANDANSKVEEVIFMNKLTVEDLKITLQMRLAEVDR 220
            K+  ++ R  +H + I RKA + NSKVEEVIF+N LT + ++ TLQ RL EV+R
Sbjct:  616 KLSASETRHAQHIQAIARKAANENSKVEEVIFINGLTADAVRATLQQRLVEVER 669
[Close]
BLAST of mRNA_L-elsbetiae_contig6090.14631.1 vs. uniprot
Match: A0A835ZAD3_9STRA (SCAPER_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 7.370e-5
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:  149 IFMNKLTVEDLKITLQMRLAEVDRRIQLGRQEQQQQARRQQLLMGISDRQ 298
            +FMNKLTVEDLKITLQMRL EV+RRI  GR       RRQ  L+GI+ RQ
Sbjct:  830 LFMNKLTVEDLKITLQMRLHEVERRIMGGRM------RRQHHLVGIAARQ 873
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6090.14631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5J638_9PHAE1.760e-5190.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5K8_ECTSI1.790e-5190.83Scaper protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A7S2WA51_9STRA6.620e-550.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2WB00_9STRA6.850e-550.00Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835ZAD3_9STRA7.370e-566.00SCAPER_N domain-containing protein n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6090contigL-elsbetiae_contig6090:6334..10773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size386
Cds size384
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6090.14631.1prot_L-elsbetiae_contig6090.14631.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6090 6334..10773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.944972-CDS-L-elsbetiae_contig6090:6333..64691622816664.944972-CDS-L-elsbetiae_contig6090:6333..6469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6090 6334..6469 +
1691683723.704487-CDS-L-elsbetiae_contig6090:6333..64691691683723.704487-CDS-L-elsbetiae_contig6090:6333..6469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6090 6334..6469 +
1622816664.9566755-CDS-L-elsbetiae_contig6090:8746..88651622816664.9566755-CDS-L-elsbetiae_contig6090:8746..8865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6090 8747..8865 +
1691683723.718472-CDS-L-elsbetiae_contig6090:8746..88651691683723.718472-CDS-L-elsbetiae_contig6090:8746..8865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6090 8747..8865 +
1622816664.9657924-CDS-L-elsbetiae_contig6090:10644..107731622816664.9657924-CDS-L-elsbetiae_contig6090:10644..10773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6090 10645..10773 +
1691683723.7304523-CDS-L-elsbetiae_contig6090:10644..107731691683723.7304523-CDS-L-elsbetiae_contig6090:10644..10773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6090 10645..10773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6090.14631.1

>prot_L-elsbetiae_contig6090.14631.1 ID=prot_L-elsbetiae_contig6090.14631.1|Name=mRNA_L-elsbetiae_contig6090.14631.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=128bp
RSAVPEGGAAPQGRGGGEEEDGGRRRPEKGAPQGDREEGERRQLQGGGGD
LHEQADRGGPEDYPADEAGRGGPPDTAGKARAAAAGTKAAAAHGHLRPAE
EAHQRQGGADERETPGGGVGERGWPDR*
back to top

mRNA from alignment at L-elsbetiae_contig6090:6334..10773+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6090.14631.1 ID=mRNA_L-elsbetiae_contig6090.14631.1|Name=mRNA_L-elsbetiae_contig6090.14631.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4440bp|location=Sequence derived from alignment at L-elsbetiae_contig6090:6334..10773+ (Laminarionema elsbetiae ELsaHSoW15)
AGGAGTGCGGTTCCGGAAGGAGGAGCAGCTCCTCAAGGCCGAGGAGGAGG
CGAAGAGGAAGATGGAGGGCGCCGACGCCCGGAGAAAGGAGCACCGCAGG
GGGATCGTGAGGAAGGCGAACGACGCCAACTCCAAGGTGCGCGATCCACG
ACCCCCCTCCCCTCCCCTGCTCCCCTGCTCCCCTGCTCCCCTGTTCCCTT
CCTCGAGTCGCTCTCGCCCTTGCCCTCTCGCTTCTCAAGCCCCACTTGTT
TCCACAATTGTTTTTGCTAAATTAGACGTCAGCGGTCTGCATCCACGCAT
ACATACGTCCAACCTGTCTAAACATACTTCGAAGTAATCTCCACGGGAAC
CCTTCTCGCCGCCAAAGACTGCAGCAGCAGGCGGTGCAGAATCCTGAGCG
TTTTTTCGCAGGCGACGAACGCTCCGTGGAAAACGCTGTCCGACCAAGGG
CACGCACAGCAGCAGTTTGGTTCCAAGTCGATCGATTTCACGACGTTTGC
GTCCAACCACGACACACACGTTCTCACGATGACCTTTTGCCGCGCTTCTG
TCCGACAAATCGGGAGTATGCACCTACCACCAGTCTACAGATTTACCGTC
TACGACACAAGATAACACACCCCCTGGACCGATTTTCAAAGCTCGGTTAC
TCTGCAACGAGTTTGATTATGATACCAAACGATACGGTTTCAGACGGCTC
TTCTTGATGAGGTCTTTCCAATGCCGCCCTTTTCGGCACTGACACTCCTC
TCGCCGCGAAGTACTTGAGCTTTGAAAATCGGTCCGGGGGGTGCGTTATC
TTGTGCCATGTACTACATGAGTAAAAAGGGTGCATATTATTCACCTTCTT
GCATGGTGTTTTCGTTTTCCCGGTTATATGGGGGAGGGAGGTGCCATACT
TCAAAAAGTAAGGTTCATACGAAGTATATATATATTTACAGAATTATTTT
CCTACGGATACCCATACATTTACCAATACTGAGTATACCAATATGCTCGG
ACGAGGGTCCGAGCAAATTTAGAAGCGACGCACACCGTCTCTGGCTGCCG
CGTCCCCAAGTAGCGAACATCTGATTCCGAGCTCTCGGCGAGAAAAAAGG
GGCTATGTACTTGCAAAGGTCAAAATAAGCAAGATTTTGATTCTCAGGAT
TGTTGTTCTGTAAACATGGGTGTAAACGCAACAGTGGCGTGTCATTTCGT
TCTATGTATGTAACCAGTGATGTTTCGATCCTGGGTACGATGGGTACGTA
GCGATAGCTCCCCCGCTAGTGTCAGCGGGCTCAGCAAGACAAAAAAGTTG
TGTTGTGTCTGCCGGGCTGGACTCGTGGGAGGAGTTAAACATGTGTGTGG
TGAGAGACCAGAGCGCGCGAAATTCGTCTTTTCACCCTCGGACATGGTGT
TTCTTTTGCTGCTTGGGCGGGGGAGGTTGGTACATTCACCCCCATGAACA
AGCGTCGTTTGTAGTGTTCACCTTTATTCGTGGTGCTTCGGACATGAGTC
CGATCTATGTGTCTCCTCCGGGGGTTACGTGTGTCGGTAGGATACGGTAT
GTTGGGGGGGAACGAGTGGGCCGGCCCCTGAGAGAGAAAAGGGTCCGCGC
ACTGGCCTGCGCGGAAGCAGCAATATGATGACTGCGCCCGTTCCTGGGGT
AAATTAGTTCCTATTTATACTCAACGCCCATACCCGCAAGACAGTGCGGG
TGGCGCCCTAGGTACACGAACCTTCACTCACGGTGCATGCCCGTCCTCTT
GCTGCTGAGGTGAAGGGAACAATAGCCTTCATCAGAATCTTCATTAGTGC
TCACTGTTCATTTTATATTTTAGGTAAATGCTCGATTTGCTACTTGGGTG
GAGGCGGTAATCTTCAAGGACGAGCGCCCTGTTGTGTCCACTTTCATCCC
ATAGGGTAACGTAGATGACACAAGATACCACCCCCCCCCTGAACAGGTTT
TCAAAATCTGGATTGCCCCCTAGAAAGAAGAGTTACCAGTGCCGAAAGGG
GGTGGCGTTGGAAAGATCTTATCGAGGGCTATCCGAACATGGGCCGTTTT
CGTGCTGGCACCCCCTTCGTTACGGAGTAATGGAGCTCTAAAACTCGGTC
CGGGGGGGGGGGGGGGATATCTTGTGTCACCTACGGTACATGCTTCATTT
TACTCAACTGGCAGGAAGGTAATTTTCACGAACGAAATTGTTCACCGCCT
TCGTCGTTCATGATGCATGTACCTTTGGTTGTCCTCCAATCATTGGCATA
TTTGTCGTCTGCCCCACTGGCCCCCTTCCTCCACTACTACGACTAGCTGG
ACGACCCGACCGGAGTCACACAGGAGGGGGGGGTTGGACCCCCTCCTGCG
GTGCCTGCCTTAGGTGTTTTTATCGATGCATGCATACCGGTGTGTGTGTT
TTTTGTCGCATAGGTGGAGGAGGTGATCTTCATGAACAAGCTGACCGTGG
AGGACCTGAAGATTACCCTGCAGATGAGGCTGGCCGAGGTGGACCGCCGG
ATACAGCTGGGAAGGCAAGAGCAGCAGCAGCAGTAGCAATAGCAGTAGCA
GTAGCAGCAGCAGCAGCAGCAGCATAGCGGTACCAAGTAGCAGTAGCAGT
TGTTGTTTTCTTCACATTAAAAACCGTGCCGATCTCTCCATCCAGTACCT
CCGTACGTCCGAACTACCGTAGGTGACACAAGATACCACACACCCCGGAC
CGAAGTTTAGAGCTGAATTACTCCGTAACGAAGAGGGTGCTAGTGCCGGA
AGGGGTGGCGTTGGAAATATCTAGTCGAGTGCTGTTCGAAAATCTGTCGT
TTGGTGCTGGCGCCATCTTCGTTACGGAGTAATGGAGCTCTAAAATTCGG
TCCAGGGTTTGCGGTATCTTGTGTCACTTACGGTAATCAAACTCGTCGCG
GTCGATTCCTGTGGTCACAGGCTAACTTACCCTCAGAAAGGGTAAATTAG
ACTGAAAAATCAAAAGGTGGACCCGCAGGGTCAGCAACGCATACAAACAA
AAGAAACGACACAGATAGTCTGGAGCCCTTCGCTCCCCTCTACACGCAAT
GTGAGGTAAAACCAAGAACTGGAACATCCAACATGCTATCTTGGTACCCC
AACAATGCCGGGGTGTTCCTCGCCGGGTTCTCGCCGGTCAGGCCAACAGT
AGGCAGTAGCAGTAGCAGTAGCAGTAGCAGTTTGTGTTGGCCGCGGTTCA
CCTGCGCCCTGTGTAGTAATCGTCTGGATTACGCGGTGCCTATTAAGGCA
GAACATGTACCTAAAGTACCCGGTGCCGTAATAGGTTCTCTCGTTTCTCT
CGTTTCCGTTAAATATCCAACGCCGTTTAAGCGTCAGCAGCCTCTGAAGT
ATGCCCAGCCTGTGAACAAAGTTGATTCCAGGGGAGGCTGCTGTTTTCTC
TTCTATCTAATACATGGCGCAGCACACGCCCGCGCGTACTTGAGACCCTC
CTTAATATGTTTGTATCTCGGGAGGCTGAGGTCCTTTTTTCCTCCGTGGA
GATGTATTTTAGTGTAGGGTTCCTATTTACAGTACACTGCCTCTACAAAG
ATCCATATGTACCTCTCTTAACAGTATGTAGCTCCTATGTATCATTTTTA
ACAAATGCTCTCACTAAACGTCAGGAGCAGGAGCTACGTACGTCCAACCT
GTGAAAAATGAAAAGAGGCGTTCCAGGGGGACTGCTGTTGTAGGCACACT
GACCCCCCCCCTCGCCGCAGTAGCCTTCGCAGGTTTTTCTGCAAGAAATT
GCATGAGATAAAGTACAGAAATGGCTATTGGGGGGGTCGGTTTGGGGTCA
GGGCTAAGGGTTACGGAATCCCAGTCTATTCTTCCTATATAGATTCAGAC
AGGAATTCTTCGCGAATGCGGTTCCGCCGCCGTCCCACACTACTACCCAT
TTTTTTTTGTCCTGGGTATCTTCCAAGTTATGAAGTAAACTGCGGGGCGC
GTACTGGAGAGCTACTTTTTTGGGCTCTGTTGTCGGATTGCCCTGGAGCT
CGAGGGTACTTGCTCGCCGCTGATAGGCATCAGCCGTAAGATCCCATGAA
ATGCTTGGCGCCCAGCAAACCACTGGATGTTTTTTCCAATGATTAAATCT
TTTTGATTTCGTCTCTTTTGGGATGTGTGTGTCTTTGTGTGTGTGTTTGT
GTGCGTTTGTGTGTGTGTGTGTGTTTGCGTGCGCGAGCGTTGATGACGAA
TAAATAACATGTATACATATTTAAGTATTTTGACGCCGTCTTTTGTGTTG
TTTGGGCGTGTGGGGTGTTCTCGTGTTATCTTTCCCCGATATTTGTTTTC
CTTCTTTGCAGGGCACGAAGGCAGCAGCTGCTCATGGGCATCTCCGACCG
GCAGAGGAAGCGCACCAGAGACAAGGCGGCGCAGATGAGCGAGAGACGCC
TGGAGGCGGAGTCGGTGAGAGAGGCTGGCCTGATCGATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6090:6334..10773+

>mRNA_L-elsbetiae_contig6090.14631.1 ID=mRNA_L-elsbetiae_contig6090.14631.1|Name=mRNA_L-elsbetiae_contig6090.14631.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig6090:6334..10773+ (Laminarionema elsbetiae ELsaHSoW15)
AGGAGTGCGGTTCCGGAAGGAGGAGCAGCTCCTCAAGGCCGAGGAGGAGG
CGAAGAGGAAGATGGAGGGCGCCGACGCCCGGAGAAAGGAGCACCGCAGG
GGGATCGTGAGGAAGGCGAACGACGCCAACTCCAAGAGGAGTGCGGTTCC
GGAAGGAGGAGCAGCTCCTCAAGGCCGAGGAGGAGGCGAAGAGGAAGATG
GAGGGCGCCGACGCCCGGAGAAAGGAGCACCGCAGGGGGATCGTGAGGAA
GGCGAACGACGCCAACTCCAAGGTGGAGGAGGTGATCTTCATGAACAAGC
TGACCGTGGAGGACCTGAAGATTACCCTGCAGATGAGGCTGGCCGAGGTG
GACCGCCGGATACAGCTGGGAAGGCAAGAGCAGCAGCAGCAGTGGAGGAG
GTGATCTTCATGAACAAGCTGACCGTGGAGGACCTGAAGATTACCCTGCA
GATGAGGCTGGCCGAGGTGGACCGCCGGATACAGCTGGGAAGGCAAGAGC
AGCAGCAGCAGGCACGAAGGCAGCAGCTGCTCATGGGCATCTCCGACCGG
CAGAGGAAGCGCACCAGAGACAAGGCGGCGCAGATGAGCGAGAGACGCCT
GGAGGCGGAGTCGGTGAGAGAGGCTGGCCTGATCGATGAGGCACGAAGGC
AGCAGCTGCTCATGGGCATCTCCGACCGGCAGAGGAAGCGCACCAGAGAC
AAGGCGGCGCAGATGAGCGAGAGACGCCTGGAGGCGGAGTCGGTGAGAGA
GGCTGGCCTGATCGATGA
back to top