mRNA_L-elsbetiae_contig608.14620.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig608.14620.1
Unique NamemRNA_L-elsbetiae_contig608.14620.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig608.14620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig608contigL-elsbetiae_contig608:26591..28806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size277
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig608.14620.1prot_L-elsbetiae_contig608.14620.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig608 26591..28806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816663.8986347-CDS-L-elsbetiae_contig608:26590..266201622816663.8986347-CDS-L-elsbetiae_contig608:26590..26620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig608 26591..26620 +
1691683722.94169-CDS-L-elsbetiae_contig608:26590..266201691683722.94169-CDS-L-elsbetiae_contig608:26590..26620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig608 26591..26620 +
1622816663.90922-CDS-L-elsbetiae_contig608:27205..272611622816663.90922-CDS-L-elsbetiae_contig608:27205..27261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig608 27206..27261 +
1691683722.9547162-CDS-L-elsbetiae_contig608:27205..272611691683722.9547162-CDS-L-elsbetiae_contig608:27205..27261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig608 27206..27261 +
1622816663.923826-CDS-L-elsbetiae_contig608:28063..282131622816663.923826-CDS-L-elsbetiae_contig608:28063..28213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig608 28064..28213 +
1691683722.9656777-CDS-L-elsbetiae_contig608:28063..282131691683722.9656777-CDS-L-elsbetiae_contig608:28063..28213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig608 28064..28213 +
1622816663.940346-CDS-L-elsbetiae_contig608:28766..288061622816663.940346-CDS-L-elsbetiae_contig608:28766..28806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig608 28767..28806 +
1691683722.9752853-CDS-L-elsbetiae_contig608:28766..288061691683722.9752853-CDS-L-elsbetiae_contig608:28766..28806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig608 28767..28806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig608.14620.1

>prot_L-elsbetiae_contig608.14620.1 ID=prot_L-elsbetiae_contig608.14620.1|Name=mRNA_L-elsbetiae_contig608.14620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
GLVAKRRTSEETTEFGANSFAKEIEIVSSFLSAGCHENILVYLSVAPGAI
VMEAMAFDLQTLLTDKRKLATVSRSQRMRLVADAVRGLDYLH
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mRNA from alignment at L-elsbetiae_contig608:26591..28806+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig608.14620.1 ID=mRNA_L-elsbetiae_contig608.14620.1|Name=mRNA_L-elsbetiae_contig608.14620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2216bp|location=Sequence derived from alignment at L-elsbetiae_contig608:26591..28806+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCTCGTGGCCAAGCGCCGCACTAGTGAGGTATATATGTATGATGTAGC
ATCTATGTATTCTTATTTTTACCTCTGTTTTTTTTTTCCTCTCAGATATT
TCAAGAAAAAAACTTGCTTTTAATAAATGGGTTCTTCGGTTTCAGTTGTA
AATTTAGGAGTACTTCTGCTGCCTTCATCTGTTTGCTTTGGTCTTGCATC
ACCCCCTGCCGCTGTGCTCTCATGAGCTCGCTGCGAAGGACGATCTTGTA
TCTATGTACGTTTTGATGCCTTTCAGGCGTGGGTGGTTACGGGGGCAGTT
TTTTCACTGCGCCTTTTTAATTAATGCATACAAATGTCAGCAGCCCACAT
CCTTTTTGTAAGGGGGTTTCCAAAATTAAAGGGTTGTTGTCTGGTTTTGC
CGTTTCATGCCCTGGGTACCACCTACCTGGGGGGTAACCGCAATTATCGG
AAAGAGCCAAGGTTCGCACCGGATGCGTGAGCCAGCGTGGGTGCAGTCAG
GCAGCTCTGGTGTCCCATAGGTAGCCCGAGCAAAAGGGTGCAGTAGTGAC
TACATATTTACATGCATATTGCCTGACATCACCCCCATCCAAACCTTCGG
CGCGCGCGCTCGCAGGAAACAACAGAGTTCGGGGCAAACAGCTTCGCAAA
AGAGATCGAGATTGTGTCCAGGTGTGTGTGTGTTTGTGTGTGTGTATGTG
TGCGCTTGATGCAAACTTCAGCGCGTGCCCACGCTGAAATTGGAATTCAG
TCGCTGACTCGCCACTTGGTGTATCTATTAAAGGCACGAGAACTATTTCA
AAACCACCGAATTGGTGCGAAACTTCGGGGTGTGCGTTGCCAAAACACTT
CCTAGTGCCCCTCTGGCACGAAGCGCAAGAGAGAACCTCACGCGTCACTG
TGTTCAGTGCCTGTGTTGCCTACGACGGGAGATTGTTCTTGTTGGATGTG
TCGTCGAGAGGACAGGACCAGACATGAGCAGGCGGGGGGAGCCCAACCAA
CCAAAGATTGCGTTCAGTAACGCTTGTTCGAGAAAACGTTTCCACCGGCA
CCCGAAAACAGAACTTGGCATGGCTGGGCCCCCGTTTCTGTAGCGACATG
CTCCCTCCCCCCTTGCACAGCAACCTCTTGCTGACCTTCAGGGCCTCAGC
AGTATATACTACTGATCGAAATAAAACAAACGTCGCTCAACCACTTCACC
GCCTCTCCCCGTGACACGCTGCATGGTAAGCAGAATAGGAGTGCTCCAAC
CCCAACAGCAATGTACGATAGGCAGTAAGTAGTCCACAATAGCGCACCTC
CTGCAACTCGTTTCTACGGCAGAGTATGTATCTACCAGCAGATAAAAACA
ATTAACCCCTGTCTTTCCCCCCAAGATAGGAAACTATATATAGTATCACA
TAGTTTACCCGCCCCTAACGCCTTCCGCTCGATACTGATTGTTGCCATAT
CGCGTGTGTGTTCCCTGCCACAGCTTCCTCTCAGCAGGTTGCCACGAGAA
CATCCTCGTATACCTGTCGGTGGCCCCTGGGGCGATCGTGATGGAGGCAA
TGGCCTTTGATCTGCAGACCCTCTTGACGGACAAGCGGAAGCTCGCCACC
GTGTCCCGTTCTCAGAGGATGAGGTTTGTGTTTCTGTTGTTGCTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGATAATGTTGTTGTTGTTGTCGTTGTCGTTGTCGTCGTCGTCGTCGTC
GTTGTCGTCGTTGCTCTTATTGTTGCGGGTGATGATGATGATAATGTGCC
TAGCAAGCTTTCGGCTTGCCCAGAGCAGCAATAGAGGCACCACTCGAGAA
AATATACTGATTTAGTGAAGCACCCAATCCCCGTTTTCGAATACGTGCGC
GCAAGGCCCCTAATTATTTTCGTGTTTTAAATGGCTTAGACTACTCTGCT
CGTTCGGGTGAGTATTGTATGCGTGCCCGCATTATTTCATCTCTTGAGGG
AAAGCGCACGCGGGATTTCCGCAAGCCAACATACCCCCTCTGTTCTTTCG
GCCGTGCCTCTTTTCTTCTTACCCCTTTTGTGTGTTTTGTTCTCTTCTCC
CGTCTCCGCCTGCCTTGTGTACACAGATTGGTGGCCGACGCCGTCCGGGG
CCTTGACTACCTCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig608:26591..28806+

>mRNA_L-elsbetiae_contig608.14620.1 ID=mRNA_L-elsbetiae_contig608.14620.1|Name=mRNA_L-elsbetiae_contig608.14620.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig608:26591..28806+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCTCGTGGCCAAGCGCCGCACTAGTGAGGGGCTCGTGGCCAAGCGCCG
CACTAGTGAGGAAACAACAGAGTTCGGGGCAAACAGCTTCGCAAAAGAGA
TCGAGATTGTGTCCAGGAAACAACAGAGTTCGGGGCAAACAGCTTCGCAA
AAGAGATCGAGATTGTGTCCAGCTTCCTCTCAGCAGGTTGCCACGAGAAC
ATCCTCGTATACCTGTCGGTGGCCCCTGGGGCGATCGTGATGGAGGCAAT
GGCCTTTGATCTGCAGACCCTCTTGACGGACAAGCGGAAGCTCGCCACCG
TGTCCCGTTCTCAGAGGATGAGCTTCCTCTCAGCAGGTTGCCACGAGAAC
ATCCTCGTATACCTGTCGGTGGCCCCTGGGGCGATCGTGATGGAGGCAAT
GGCCTTTGATCTGCAGACCCTCTTGACGGACAAGCGGAAGCTCGCCACCG
TGTCCCGTTCTCAGAGGATGAGATTGGTGGCCGACGCCGTCCGGGGCCTT
GACTACCTCCACATTGGTGGCCGACGCCGTCCGGGGCCTTGACTACCTCC
AC
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