mRNA_L-elsbetiae_contig6.14515.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6.14515.1
Unique NamemRNA_L-elsbetiae_contig6.14515.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6.14515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6contigL-elsbetiae_contig6:84299..87011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size984
Cds size984
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6.14515.1prot_L-elsbetiae_contig6.14515.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6 84299..87011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.9234378-CDS-L-elsbetiae_contig6:84298..843811622816650.9234378-CDS-L-elsbetiae_contig6:84298..84381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 84299..84381 +
1691683712.7493448-CDS-L-elsbetiae_contig6:84298..843811691683712.7493448-CDS-L-elsbetiae_contig6:84298..84381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 84299..84381 +
1622816650.937081-CDS-L-elsbetiae_contig6:85022..854041622816650.937081-CDS-L-elsbetiae_contig6:85022..85404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 85023..85404 +
1691683712.759014-CDS-L-elsbetiae_contig6:85022..854041691683712.759014-CDS-L-elsbetiae_contig6:85022..85404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 85023..85404 +
1622816650.9499211-CDS-L-elsbetiae_contig6:85918..860341622816650.9499211-CDS-L-elsbetiae_contig6:85918..86034Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 85919..86034 +
1691683712.7674055-CDS-L-elsbetiae_contig6:85918..860341691683712.7674055-CDS-L-elsbetiae_contig6:85918..86034Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 85919..86034 +
1622816650.9658928-CDS-L-elsbetiae_contig6:86426..866111622816650.9658928-CDS-L-elsbetiae_contig6:86426..86611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 86427..86611 +
1691683712.7846162-CDS-L-elsbetiae_contig6:86426..866111691683712.7846162-CDS-L-elsbetiae_contig6:86426..86611Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 86427..86611 +
1622816650.97805-CDS-L-elsbetiae_contig6:86793..870111622816650.97805-CDS-L-elsbetiae_contig6:86793..87011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 86794..87011 +
1691683712.7991762-CDS-L-elsbetiae_contig6:86793..870111691683712.7991762-CDS-L-elsbetiae_contig6:86793..87011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 86794..87011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6.14515.1

>prot_L-elsbetiae_contig6.14515.1 ID=prot_L-elsbetiae_contig6.14515.1|Name=mRNA_L-elsbetiae_contig6.14515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=328bp
LGAIGAFCREQFVELVLGWAVVPGDESREAQRSAVQLLSSLSRQFQSDEM
HIVFEEGVHLTWGAAPLEEPVLGRPKEGGCRRPPEAGTGGSGGTREGLMP
GLSSGFSFSETGAAPHVGAAAAATASGSASGQRGGSGSGLSLTRFLSNVV
VACSQGTIVLDGVPPAAVASLQEVGYLPVELAFSLGTCTMSGFALAPLSG
DGVIEGCSDELSMLLGPAHLGYVCAGHRGPRSGRGEEACLTIHGALEGVA
TAVAVARRTGCGVQLRVSTTTAPDTATAPASPPSRHNPTPGDPATPAAAV
DPTTCEGMNIYYPALLSDALEFLGAGLC
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mRNA from alignment at L-elsbetiae_contig6:84299..87011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6.14515.1 ID=mRNA_L-elsbetiae_contig6.14515.1|Name=mRNA_L-elsbetiae_contig6.14515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2713bp|location=Sequence derived from alignment at L-elsbetiae_contig6:84299..87011+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGGCGCAATCGGGGCGTTTTGCAGAGAGCAATTTGTCGAGCTCGTTCT CGGGTGGGCGGTCGTTCCTGGAGACGAGTCGAGGTGAGGGTGAAAACGGT CAGAGGGGCTGTTTTTTCTTCTTTCTTCTTCCCTCCCCGCTTTTTCGGCA GACTTGTAGACAAAGCACGATGCTTCGCTCGTGCTGCTTCCCCAAGCATG CGGCCGTAATGATGGGGTATGTTAGCACGTATCCGGCTCACCTCACCCGA TCTGTGCGTAAAGGGCACAAACACTGTCACCGGTGTTGTGAGTGTGCCAG ACCCGTATTGGTATTAAGAGGTGATGTTCACTGTTGTTCACTCTGGTCTG CACTGGCGCTGCTGTTTTGTTTGTTTCGTCGTGTTAAGTGTTTGTGGTGT GTCGTCCGACGTGATTTATGCGCGCACGCATCGTCGTGGAGATGCGCTTG TTCCACGATTGTTTACCGTGCAAACACTCCTTGCCGTTTATTTCCCATTG CGTAGACCGTATCCTCCCCGTTCACAGCGTCTACTGCTGTGCGAGAACAA CGCCAGCACACGCGCTCTGCAGACGCAATTTACAAGTGTGCTTCCATTGA CATACGTGGGACGAGGGCTTCCTGGTAGGCTGGATGGAAAGCTCTATCTC GAAACTACCAATCGCACGCCGACGGAGGCGAATACTGAAAATCAACCCGA AGCATCCCCCTGCCCCCCCTGCAGGGAAGCTCAGCGTTCGGCGGTCCAGC TCCTGTCTTCCCTGTCGCGACAGTTCCAAAGTGACGAGATGCACATAGTC TTCGAGGAAGGCGTCCACCTCACCTGGGGGGCGGCGCCTTTAGAGGAACC CGTCCTTGGTCGACCCAAAGAGGGGGGCTGCAGACGACCACCGGAGGCAG GCACGGGAGGTTCTGGCGGGACGAGGGAAGGGTTGATGCCGGGGCTGTCT TCTGGTTTTTCTTTTTCAGAGACTGGAGCTGCGCCGCACGTGGGTGCGGC GGCGGCGGCGACTGCGTCGGGCTCGGCAAGCGGGCAGAGAGGAGGGTCGG GTTCGGGGTTGTCTCTGACCCGATTCCTGAGCAACGTCGTGGTTGCTTGC AGCCAGGCGAGTCGAGTTCGCATACTGCTGCGCGTTGATTTGCTCGGTTG GAGGTGTTGTGGAGCTATCTGTGGTGCACTTTTGCTGCTGAATTTCGAGA CCGGTTCTGGAGCCCCTGCATCCATGCTATGGTTTGGTGGCTGACAGCGG CAAAAATCGCCGGCAGAATGTGTTTTTCCGTGTCAATGCTCCTTGAAGGG GTTCTGCCAGTGTCAGCATTTTGGTGTGTTGCATTTTTTTGATGCCCACA GTTCTCAACATGCAGCATCGAGGCCTCGGTAGAATTTAATAAACGGAGGT GTGTCGTGCTTCGGCAAGTGGATGATGGTACAGGAGCAAACCCAGCACGA TCACCCTGAACAAAGTGCCAACAACCGGTCTTTATTCGCACCTGTTTCCT CTGTTTTTGCCGCTATTGGTCAGCCTTGCAAAAAATCCCTTTGTGCTGAC CTTCGATGGGCTCCTTGTTTTTCGGAAGTCGCGTACCTGATCGCGCGGAT CTTTTTGTGGTTCTGTCCAGGGGACCATCGTTTTGGACGGAGTTCCTCCC GCGGCAGTGGCATCGCTGCAGGAGGTCGGCTACCTGCCAGTGGAGCTGGC ATTCTCGCTGGGCACCTGCACGATGAGTGGCTTTGCGTGAGTTACCCGCC TTGACCAAACCGAGTTGGTTAGGCTAGCTCGCGGGACCACCAGCATACCC CGGTCTGACTTTTCGCAGGGTTAACCGCGTTGGGCGCTTTTGGTTCACGT TTGTTTCCCCCCACCCGGTTTGATCCCTGAGAGGAAGACGCGGGAACATG ATCCACGCCGTTGTTTTCTTTGGCACACATAGCACGGACGGTACACGCGG CGTTGTCACCCCTTTTGTTGATCAGGTCCCTAACTGCTGAGTTCGACAAG CTGGTCGCGGCACGAACCGTGTGAAATGAACTCTTTCCTCCCGTCAACCA TATTCCGTTTTGAGAAATAACACTCAAATGTTTCCCATCCTGTAACCCCC GGCCACGAAAACGTCTCTTCTTGCACAGCTTGGCACCGCTCTCCGGAGAC GGTGTCATCGAAGGCTGCTCGGACGAACTTTCGATGCTTCTGGGCCCAGC ACATCTGGGCTATGTGTGTGCAGGGCATCGAGGACCCCGGAGCGGGAGAG GCGAGGAGGCATGCCTCACCATCCATGGAGCCCTTGAGGGCGTGGCAACA GCTGTAGCCGTAGGTGGGTAAGGAGTGCGCGACATTCGTCTCTCGCACCG CACAAATTACCGTCGTCGAGGGCAGTGCCTGTTCGTTGGTGACGATCCAC GCCTGCCTGTACACGCCAGAAACGTCAACCCAGTGAATTCTCCCCGGCCT CATTACGCCCCCGTTGTGTGCTCTGTGCTTCGTGCCCACACGCAGCGCGT CGCACGGGGTGCGGCGTGCAGCTCCGAGTGAGCACGACCACGGCACCGGA CACAGCTACGGCTCCCGCTTCACCGCCGTCCAGACATAATCCAACTCCGG GCGACCCCGCTACCCCCGCTGCTGCCGTAGACCCCACCACCTGCGAAGGA ATGAACATATACTATCCCGCTCTGCTCTCGGATGCTCTCGAGTTTCTCGG GGCCGGGCTGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6:84299..87011+

>mRNA_L-elsbetiae_contig6.14515.1 ID=mRNA_L-elsbetiae_contig6.14515.1|Name=mRNA_L-elsbetiae_contig6.14515.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1968bp|location=Sequence derived from alignment at L-elsbetiae_contig6:84299..87011+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGGCGCAATCGGGGCGTTTTGCAGAGAGCAATTTGTCGAGCTCGTTCT
CGGGTGGGCGGTCGTTCCTGGAGACGAGTCGAGCTCGGCGCAATCGGGGC
GTTTTGCAGAGAGCAATTTGTCGAGCTCGTTCTCGGGTGGGCGGTCGTTC
CTGGAGACGAGTCGAGGGAAGCTCAGCGTTCGGCGGTCCAGCTCCTGTCT
TCCCTGTCGCGACAGTTCCAAAGTGACGAGATGCACATAGTCTTCGAGGA
AGGCGTCCACCTCACCTGGGGGGCGGCGCCTTTAGAGGAACCCGTCCTTG
GTCGACCCAAAGAGGGGGGCTGCAGACGACCACCGGAGGCAGGCACGGGA
GGTTCTGGCGGGACGAGGGAAGGGTTGATGCCGGGGCTGTCTTCTGGTTT
TTCTTTTTCAGAGACTGGAGCTGCGCCGCACGTGGGTGCGGCGGCGGCGG
CGACTGCGTCGGGCTCGGCAAGCGGGCAGAGAGGAGGGTCGGGTTCGGGG
TTGTCTCTGACCCGATTCCTGAGCAACGTCGTGGTTGCTTGCAGCCAGGG
AAGCTCAGCGTTCGGCGGTCCAGCTCCTGTCTTCCCTGTCGCGACAGTTC
CAAAGTGACGAGATGCACATAGTCTTCGAGGAAGGCGTCCACCTCACCTG
GGGGGCGGCGCCTTTAGAGGAACCCGTCCTTGGTCGACCCAAAGAGGGGG
GCTGCAGACGACCACCGGAGGCAGGCACGGGAGGTTCTGGCGGGACGAGG
GAAGGGTTGATGCCGGGGCTGTCTTCTGGTTTTTCTTTTTCAGAGACTGG
AGCTGCGCCGCACGTGGGTGCGGCGGCGGCGGCGACTGCGTCGGGCTCGG
CAAGCGGGCAGAGAGGAGGGTCGGGTTCGGGGTTGTCTCTGACCCGATTC
CTGAGCAACGTCGTGGTTGCTTGCAGCCAGGGGACCATCGTTTTGGACGG
AGTTCCTCCCGCGGCAGTGGCATCGCTGCAGGAGGTCGGCTACCTGCCAG
TGGAGCTGGCATTCTCGCTGGGCACCTGCACGATGAGTGGCTTTGCGGGA
CCATCGTTTTGGACGGAGTTCCTCCCGCGGCAGTGGCATCGCTGCAGGAG
GTCGGCTACCTGCCAGTGGAGCTGGCATTCTCGCTGGGCACCTGCACGAT
GAGTGGCTTTGCCTTGGCACCGCTCTCCGGAGACGGTGTCATCGAAGGCT
GCTCGGACGAACTTTCGATGCTTCTGGGCCCAGCACATCTGGGCTATGTG
TGTGCAGGGCATCGAGGACCCCGGAGCGGGAGAGGCGAGGAGGCATGCCT
CACCATCCATGGAGCCCTTGAGGGCGTGGCAACAGCTGTAGCCGTAGCTT
GGCACCGCTCTCCGGAGACGGTGTCATCGAAGGCTGCTCGGACGAACTTT
CGATGCTTCTGGGCCCAGCACATCTGGGCTATGTGTGTGCAGGGCATCGA
GGACCCCGGAGCGGGAGAGGCGAGGAGGCATGCCTCACCATCCATGGAGC
CCTTGAGGGCGTGGCAACAGCTGTAGCCGTAGCGCGTCGCACGGGGTGCG
GCGTGCAGCTCCGAGTGAGCACGACCACGGCACCGGACACAGCTACGGCT
CCCGCTTCACCGCCGTCCAGACATAATCCAACTCCGGGCGACCCCGCTAC
CCCCGCTGCTGCCGTAGACCCCACCACCTGCGAAGGAATGAACATATACT
ATCCCGCTCTGCTCTCGGATGCTCTCGAGTTTCTCGGGGCCGGGCTGTGC
CGCGTCGCACGGGGTGCGGCGTGCAGCTCCGAGTGAGCACGACCACGGCA
CCGGACACAGCTACGGCTCCCGCTTCACCGCCGTCCAGACATAATCCAAC
TCCGGGCGACCCCGCTACCCCCGCTGCTGCCGTAGACCCCACCACCTGCG
AAGGAATGAACATATACTATCCCGCTCTGCTCTCGGATGCTCTCGAGTTT
CTCGGGGCCGGGCTGTGC
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