mRNA_L-elsbetiae_contig6.14514.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6.14514.1
Unique NamemRNA_L-elsbetiae_contig6.14514.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6.14514.1 vs. uniprot
Match: A0A6C1PPK0_9SPIO (Glyco_hydro_20b domain-containing protein n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A6C1PPK0_9SPIO)

HSP 1 Score: 55.1 bits (131), Expect = 2.800e-6
Identity = 28/88 (31.82%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:    4 VRVAGTGEPGLYYGVRTLCQLLRFYARPSRAGESALGIPCCILRDEPDVVRRSLVLDVRYPLVPTWSSLMRTIEAASHSRVNVVQLTV 267
            + +A +   G YY  +TL  L+  + R          +PC ++RDEPD+VRR   LD     VPT  ++ + +E  +  ++N +QL V
Sbjct:   84 IEIASSTAVGAYYATQTLRDLIAMHGR---------SLPCVVIRDEPDLVRRGFYLDCSRGKVPTVETVRQLVERLARWKINELQLYV 162
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BLAST of mRNA_L-elsbetiae_contig6.14514.1 vs. uniprot
Match: R6GXA7_9FIRM (Beta-N-acetylhexosaminidase n=1 Tax=Firmicutes bacterium CAG:137 TaxID=1263004 RepID=R6GXA7_9FIRM)

HSP 1 Score: 53.5 bits (127), Expect = 9.680e-6
Identity = 31/88 (35.23%), Postives = 45/88 (51.14%), Query Frame = 1 
Query:    4 VRVAGTGEPGLYYGVRTLCQLLRFYARPSRAGESALGIPCCILRDEPDVVRRSLVLDVRYPLVPTWSSLMRTIEAASHSRVNVVQLTV 267
            VR+ G+GE GL YGV+TL Q+LR         +  L +PC  L D P +  R L  DV    +PT + L    +  S  ++N + L +
Sbjct:   91 VRITGSGEAGLLYGVQTLRQILR---------QEGLVLPCLHLTDRPALATRGLFYDVTRGRIPTMAFLKDLADRCSFYKLNQLHLYI 169
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BLAST of mRNA_L-elsbetiae_contig6.14514.1 vs. uniprot
Match: A0A7X7AYV4_9BACT (Beta-N-acetylhexosaminidase n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7X7AYV4_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 3.500e-5
Identity = 29/81 (35.80%), Postives = 42/81 (51.85%), Query Frame = 1 
Query:   10 VAGTGEPGLYYGVRTLCQLLRFYARPSRAGESALGIPCCILRDEPDVVRRSLVLDVRYPLVPTWSSLMRTIEAASHSRVNV 252
            V+G G  GL+YGV+TLCQL+R       A     GIPC  +RD P +  R    D+      T + L R  +  +H ++N+
Sbjct:  126 VSGAGPAGLFYGVQTLCQLIR-------ANRQGQGIPCLAIRDWPSLRWRCFQDDLTRGPSSTLAELKRQADLGAHLKLNL 199
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BLAST of mRNA_L-elsbetiae_contig6.14514.1 vs. uniprot
Match: A0A2E8K5V2_9GAMM (Beta-N-acetylhexosaminidase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8K5V2_9GAMM)

HSP 1 Score: 51.2 bits (121), Expect = 6.180e-5
Identity = 29/79 (36.71%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:   25 EPGLYYGVRTLCQLLRFYARPSRAGESALGIPCCILRDEPDVVRRSLVLDVRYPLVPTWSSLMRTIEAASHSRVNVVQL 261
            EPG+YYG+ TL Q+L       +AG SA      +++DEPD   R ++LD+    VP+  +L R I+  +  ++N +QL
Sbjct:   96 EPGIYYGLTTLNQILE------QAGTSASHF---LVQDEPDFATRGVMLDISRCKVPSMKTLYRLIDQLAQMKINQLQL 165
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BLAST of mRNA_L-elsbetiae_contig6.14514.1 vs. uniprot
Match: A0A1M6UXJ0_9FIRM (Beta-N-acetylhexosaminidase n=1 Tax=Anaerocolumna jejuensis DSM 15929 TaxID=1121322 RepID=A0A1M6UXJ0_9FIRM)

HSP 1 Score: 51.2 bits (121), Expect = 6.180e-5
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:    4 VRVAGTGEPGLYYGVRTLCQLLRFYARPSRAGESALGIPCCILRDEPDVVRRSLVLDVRYPLVPTWSSLMRTIEAASHSRVNVVQLTV 267
            +++A   E GL YG++TL Q++      S+AG  AL +PCC ++D P++  R    DV    +PT  SL    +  S+ ++N +QL +
Sbjct:   88 IQLAAGSERGLLYGIQTLRQMV------SQAG--AL-LPCCEIKDYPEIANRGYYFDVTRGRIPTMESLKALADKLSYYKMNQLQLYI 166
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6.14514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6C1PPK0_9SPIO2.800e-631.82Glyco_hydro_20b domain-containing protein n=1 Tax=... [more]
R6GXA7_9FIRM9.680e-635.23Beta-N-acetylhexosaminidase n=1 Tax=Firmicutes bac... [more]
A0A7X7AYV4_9BACT3.500e-535.80Beta-N-acetylhexosaminidase n=1 Tax=Armatimonadete... [more]
A0A2E8K5V2_9GAMM6.180e-536.71Beta-N-acetylhexosaminidase n=1 Tax=Gammaproteobac... [more]
A0A1M6UXJ0_9FIRM6.180e-534.09Beta-N-acetylhexosaminidase n=1 Tax=Anaerocolumna ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6contigL-elsbetiae_contig6:82662..83690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size372
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816652.5252988-CDS-L-elsbetiae_contig6:82661..828401622816652.5252988-CDS-L-elsbetiae_contig6:82661..82840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 82662..82840 +
1691683714.1925848-CDS-L-elsbetiae_contig6:82661..828401691683714.1925848-CDS-L-elsbetiae_contig6:82661..82840Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 82662..82840 +
1622816652.5356963-CDS-L-elsbetiae_contig6:83497..836901622816652.5356963-CDS-L-elsbetiae_contig6:83497..83690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 83498..83690 +
1691683714.2036874-CDS-L-elsbetiae_contig6:83497..836901691683714.2036874-CDS-L-elsbetiae_contig6:83497..83690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 83498..83690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6.14514.1prot_L-elsbetiae_contig6.14514.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6 82662..83690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6.14514.1

>prot_L-elsbetiae_contig6.14514.1 ID=prot_L-elsbetiae_contig6.14514.1|Name=mRNA_L-elsbetiae_contig6.14514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MVRVAGTGEPGLYYGVRTLCQLLRFYARPSRAGESALGIPCCILRDEPDV
VRRSLVLDVRYPLVPTWSSLMRTIEAASHSRVNVVQLTVTRDTASWLARQ
DHKEDQSQTATTPRAAGRGGAGC*
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mRNA from alignment at L-elsbetiae_contig6:82662..83690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6.14514.1 ID=mRNA_L-elsbetiae_contig6.14514.1|Name=mRNA_L-elsbetiae_contig6.14514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1029bp|location=Sequence derived from alignment at L-elsbetiae_contig6:82662..83690+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAGAGTTGCGGGGACGGGGGAGCCGGGCCTCTACTACGGCGTCAG
GACGCTATGCCAGCTCTTACGGTTCTACGCGCGGCCGTCGAGGGCGGGGG
AGTCGGCCTTGGGCATTCCCTGCTGTATCCTGAGAGACGAGCCGGACGTC
GTTCGGCGCAGTCTCGTCTTGGACGTGCGGTAAGCGACCACCAACCGGCC
GCGTGTGCGGGGGTCGAGCGCACGGCAGGCGCTGCCTTTCGCGTTTCTTT
CTTGTCTGTGCCTCCCCAAAGCGGCTTGTTAGCGGTTGAGCTTGTTACCG
TTCTGTCGAATTAATGTTTTCTGTTTGCGCGTGGCGGAGCTCTAACTCCT
TCAAGAAGGTTTGTATTTTTTTGCTACATAATTTAGCAGTACGTTTTTGC
ACTCTTTTGGGCCTGGGGCCATGTAAGCCGCCGCGTCAGCCGGACCAGGT
ACGGATGCTACAAGGGTACTAAGCAAACCCAGGAACCGTTTTCAACGTGT
ACAATGCGATGTGTTTTTGCACTGCCGGGACGGATCTTTGACCCGGTGTT
ATCACCACCTTGTTCTTCTGCACCGTCCTTGGGCCTTTTCCGACGATACC
GTTTGTTTTTAGGGTAGGAGTTGTCTCTCTTTGTACATGGGTAGTTTTGA
CACGATCCTGGACAAGTGGGGGAGAGCCTCTGAGCCGCTGCTATTTAGTG
GATCTCGATCCTGGATCCTAACGAATACTCCTTGCTGCGGAATTCCTGCC
TCCCCGCGTCACGTGACCTAGTGCCGCGTAGCAAACGGTCCTTGTACCTG
CTGGCTGTTTGTTCCTGTCTTGTCTGTTCTCGTCAGGTACCCCCTTGTGC
CGACGTGGTCGTCGCTCATGCGAACCATAGAGGCCGCGTCGCACTCCCGC
GTGAATGTGGTACAGCTGACGGTGACGCGCGACACGGCGTCGTGGCTGGC
GAGGCAAGACCATAAAGAAGACCAAAGCCAAACTGCGACCACGCCTAGAG
CAGCAGGCAGGGGAGGTGCGGGGTGTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6:82662..83690+

>mRNA_L-elsbetiae_contig6.14514.1 ID=mRNA_L-elsbetiae_contig6.14514.1|Name=mRNA_L-elsbetiae_contig6.14514.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig6:82662..83690+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAGAGTTGCGGGGACGGGGGAGCCGGGCCTCTACTACGGCGTCAG
GACGCTATGCCAGCTCTTACGGTTCTACGCGCGGCCGTCGAGGGCGGGGG
AGTCGGCCTTGGGCATTCCCTGCTGTATCCTGAGAGACGAGCCGGACGTC
GTTCGGCGCAGTCTCGTCTTGGACGTGCGATGGTGAGAGTTGCGGGGACG
GGGGAGCCGGGCCTCTACTACGGCGTCAGGACGCTATGCCAGCTCTTACG
GTTCTACGCGCGGCCGTCGAGGGCGGGGGAGTCGGCCTTGGGCATTCCCT
GCTGTATCCTGAGAGACGAGCCGGACGTCGTTCGGCGCAGTCTCGTCTTG
GACGTGCGGTACCCCCTTGTGCCGACGTGGTCGTCGCTCATGCGAACCAT
AGAGGCCGCGTCGCACTCCCGCGTGAATGTGGTACAGCTGACGGTGACGC
GCGACACGGCGTCGTGGCTGGCGAGGCAAGACCATAAAGAAGACCAAAGC
CAAACTGCGACCACGCCTAGAGCAGCAGGCAGGGGAGGTGCGGGGTGTTA
AGTACCCCCTTGTGCCGACGTGGTCGTCGCTCATGCGAACCATAGAGGCC
GCGTCGCACTCCCGCGTGAATGTGGTACAGCTGACGGTGACGCGCGACAC
GGCGTCGTGGCTGGCGAGGCAAGACCATAAAGAAGACCAAAGCCAAACTG
CGACCACGCCTAGAGCAGCAGGCAGGGGAGGTGCGGGGTGTTAA
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