mRNA_L-elsbetiae_contig6.14512.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6.14512.1
Unique NamemRNA_L-elsbetiae_contig6.14512.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6.14512.1 vs. uniprot
Match: A0A7S3ZWW5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWW5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.900e-5
Identity = 43/114 (37.72%), Postives = 56/114 (49.12%), Query Frame = 1
Query:    4 DGASALHISSMKGRIDASRALLRLGAAPEVHGTGPLSGKTPWDVATTAVRQVYASELFSQVAQGEEGKVLALLRA-GVRADVTDGGS-RSDTPLHWAAGAGHVSLCSILLENGA 339
            D AS L  +    ++DA RALLR+GA P        S    W    +A R    +EL  QVA G+ G+V  LLR  G    ++D  +   D+PLHWAA  G  +    LL  GA
Sbjct:   71 DDASLLEKACSSNKVDAVRALLRVGAIPAA------STPVAWLEEGSACRAAAHAELMQQVALGDAGRVTKLLRLLGPIPRLSDAATFGGDSPLHWAASFGQETALEALLAAGA 178          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6.14512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3ZWW5_9STRA5.900e-537.72Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6contigL-elsbetiae_contig6:79210..81880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score70.1
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog6500.XP_005110059.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ankyrin repeats
EggNOG OGs2RPUM@2759,39WIT@33154,3BJY1@33208,3D1JT@33213,COG0666@1
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons5
Model size868
Cds size867
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6.14512.1prot_L-elsbetiae_contig6.14512.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6 79210..81879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816652.4489172-CDS-L-elsbetiae_contig6:79209..792991622816652.4489172-CDS-L-elsbetiae_contig6:79209..79299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 79210..79299 +
1691683714.1373513-CDS-L-elsbetiae_contig6:79209..792991691683714.1373513-CDS-L-elsbetiae_contig6:79209..79299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 79210..79299 +
1622816652.4613855-CDS-L-elsbetiae_contig6:79744..798791622816652.4613855-CDS-L-elsbetiae_contig6:79744..79879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 79745..79879 +
1691683714.1490312-CDS-L-elsbetiae_contig6:79744..798791691683714.1490312-CDS-L-elsbetiae_contig6:79744..79879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 79745..79879 +
1622816652.4710944-CDS-L-elsbetiae_contig6:80415..805541622816652.4710944-CDS-L-elsbetiae_contig6:80415..80554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 80416..80554 +
1691683714.1601334-CDS-L-elsbetiae_contig6:80415..805541691683714.1601334-CDS-L-elsbetiae_contig6:80415..80554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 80416..80554 +
1622816652.4832602-CDS-L-elsbetiae_contig6:80954..810821622816652.4832602-CDS-L-elsbetiae_contig6:80954..81082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 80955..81082 +
1691683714.1732137-CDS-L-elsbetiae_contig6:80954..810821691683714.1732137-CDS-L-elsbetiae_contig6:80954..81082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 80955..81082 +
1622816652.495396-CDS-L-elsbetiae_contig6:81504..818791622816652.495396-CDS-L-elsbetiae_contig6:81504..81879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 81505..81879 +
1691683714.1827333-CDS-L-elsbetiae_contig6:81504..818791691683714.1827333-CDS-L-elsbetiae_contig6:81504..81879Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 81505..81879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6.14512.1

>prot_L-elsbetiae_contig6.14512.1 ID=prot_L-elsbetiae_contig6.14512.1|Name=mRNA_L-elsbetiae_contig6.14512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=289bp
SDGASALHISSMKGRIDASRALLRLGAAPEVHGTGPLSGKTPWDVATTAV
RQVYASELFSQVAQGEEGKVLALLRAGVRADVTDGGSRSDTPLHWAAGAG
HVSLCSILLENGADLTRCNSEGASALHEASKCGHADVVSLLLERGANPHV
VGTAGEFKDKTPLQVSSGQAVSEALRSPLPPPRSAPPPPAPPSEGQLSDG
LEETRVPGVGDGLARPLGSGVAGGGEEESLVEVRPDGHRRRRVERGWEQA
KEEEETGEEERNGEGGHEGRASLAAAGVSRGAAAAKDSR
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mRNA from alignment at L-elsbetiae_contig6:79210..81880+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6.14512.1 ID=mRNA_L-elsbetiae_contig6.14512.1|Name=mRNA_L-elsbetiae_contig6.14512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2671bp|location=Sequence derived from alignment at L-elsbetiae_contig6:79210..81880+ (Laminarionema elsbetiae ELsaHSoW15)
AGTGATGGGGCGTCTGCCCTGCACATTTCGAGCATGAAAGGCCGTATCGA CGCCTCCCGTGCCCTCCTCAGGCTTGGTGCTGCCCCAGAGGTGAGCTGGA TGCCCTATTGTGAGAATCGTGGCTCCTGTTGGTGAGCAAGCCAAGAAAGA ACAGGGAGGAAACACCCCTTACCCTAAACATCCGCTGTGGTCTCTCAGTC TTGTGTTCGGGTTGCGTTTTCGAGCTCTAGACTCATTTTTTGCAGACTCC GCTTGTTGGCCTAGCCGGAATAAGTAAGTTGAGTGTCCTGTGTACTGCTG AGAGGGAGATGTGTTTGTGATCCCAAAGTAATTGCATCGGGGGAGTTTTG TTCGCCTGCTTCGCTCCCAAGCATGCCACAACCTGGAAGGAAGCTGTGAT TTTTGCGGCAGAGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTGTA TGTTTGCCAAAATCACAGACTAGTTGCATTCCAATGACCGACAGTAGTCA CTTTCCTACTGACTGGCGGTTCGCCGTTCCTACAGGTACACGGTACAGGA CCTCTGAGTGGTAAAACCCCTTGGGATGTGGCCACCACCGCAGTGCGGCA GGTCTACGCCAGCGAGTTGTTCTCGCAAGTGGCGCAAGGGGAGGAGGGAA AGGTTCTCGCGCTGCTCCGGGTAAGCGGACAGACTCTAGGTAACCTGATG TGAGCTTGGGAACCCGGACAGCTAGGCAGCAATTGCAGAAAGGTAGTCTT TGGGATGAGGTTTGCACGCCAATGTATGCTAGGTGTGCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTC CCCCCCCCCTCCCCCNNNNNNNNNNGAGACAGTTAACGGAGGTGTGCTTT TGGGGTGAGGGTTGGCCCCCCAGGGTTGGTAGGTTGGCCCCCCCCCCCCC CCCCTCCCGTGCCGCCTTACCGCGCCTCTCAAAAACGTTTTGCCTTTTCA TCACGGGCGAGAGAAAAATTTCCCGCGATCTTTTACAAGGGAGTTTTAAG CGAGTATTCCGACCGGCCAGGGATTTGGTGGATAGAATCGCCGAGTTTCA CGTCTGGCCAGTGCTTGCCTTCCCAACTGTAGATGGGCAACACAATGCCA GTCAGTGCGCACACACCTCGGTGTGCTGCTACCTATGATTTTTTGTCTTG GACCAGGCCGGCGTGCGGGCAGACGTTACGGATGGGGGTTCTCGCTCCGA CACGCCTCTCCATTGGGCAGCGGGTGCCGGGCATGTGAGCCTTTGCTCGA TCCTGCTTGAGAACGGGGCGGACCTGACCCGCTGCAACAGCGAAGGTGGG TCGAAACCCCGGTCTGCATGGGTAGTTTTGGTGGTGTCCGCGACAGGGCG GTATACCGGAGGTCGCGTAGTACATAGATGGTGCCACAGGCGCGTCGACC GGCCGATGTTTTCAAAGCTCGGTAAGCCGAAAACCCGAGGGAGGGTGCCA ACCGAGCGACAAGTTCATCAGACATTCCTCAAGGAAACACTTCCAAGGCC GTTTGCGGTTTGGCAATTCGCATTGTCGTTGGTGTGGAGAAGTCGAGTTT GGAGAAGTTGGTCCAGAGTGTGTGGTGACACGCGAGTGCGACTAACTGCG TGTGCTTTTGCTGGAAGCAAGAAAGCGCGGGCAAGAAGCGCGAACTCCGA GCTTATCGTTGACTTCTACACGTTCCTCCTTCTTGCGCTTTGCAGGAGCG AGTGCCCTCCACGAAGCAAGCAAATGCGGGCACGCGGACGTGGTGTCCCT TCTACTGGAACGAGGCGCGAACCCGCATGTAGTGGGTACTGCGGGCGAGT TCAAGGACAAGACCCCTCTCCAGGCGAGTGGCGAGTCAGGACGCGCTTTT CAGCTACTTTTTCGTGTTTCAAAGAGGGAAAACGAGCACAGACAGGGAGA GGATCTGTTAAGGGTTGACCTCGAGTTGTTTGACCATTGACCACACGCAT GCGAAAGGAGCTAGCACCTATGTTCCTACTCCGTCTAAAGGGGCCACCAT TTTACGGGCATTCTCACATGATTTGCCACAAATTTCATGTACGAAAAGCG TTATTTGTTATCTTGTCGCGGAAGTTGTGAGACACTATTGTGCGCCACAG CGCCAAGGCAAAAAAGTGATGTTGAAAAAGGTTGTCGCGTGAACAGCGTA TATATGTAACCCGTGCAGCGACCCGCCCGCCCGCCCGCCCGCCCTCGTGC GCATGTTCTGTGGCCTGCCCGGCGCCCTCCCTCCCGCTGTCGCAGGTATC TTCCGGCCAGGCGGTGTCCGAAGCACTTCGGTCGCCGCTCCCACCGCCCC GCTCCGCGCCGCCCCCTCCCGCGCCGCCCTCTGAAGGCCAACTCTCAGAT GGATTAGAGGAAACGCGCGTGCCTGGCGTTGGGGATGGTCTCGCGCGGCC GCTTGGTAGCGGCGTCGCCGGTGGGGGCGAGGAGGAGTCGCTGGTCGAGG TGCGCCCAGATGGTCACCGCCGGCGCCGTGTAGAGCGGGGCTGGGAACAG GCCAAGGAGGAGGAGGAGACGGGGGAGGAGGAGCGCAACGGGGAAGGCGG TCATGAGGGGCGGGCGTCACTAGCTGCGGCAGGCGTTTCTCGTGGTGCCG CTGCCGCGAAGGACAGCAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6:79210..81880+

>mRNA_L-elsbetiae_contig6.14512.1 ID=mRNA_L-elsbetiae_contig6.14512.1|Name=mRNA_L-elsbetiae_contig6.14512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1734bp|location=Sequence derived from alignment at L-elsbetiae_contig6:79210..81880+ (Laminarionema elsbetiae ELsaHSoW15)
AGTGATGGGGCGTCTGCCCTGCACATTTCGAGCATGAAAGGCCGTATCGA
CGCCTCCCGTGCCCTCCTCAGGCTTGGTGCTGCCCCAGAGAGTGATGGGG
CGTCTGCCCTGCACATTTCGAGCATGAAAGGCCGTATCGACGCCTCCCGT
GCCCTCCTCAGGCTTGGTGCTGCCCCAGAGGTACACGGTACAGGACCTCT
GAGTGGTAAAACCCCTTGGGATGTGGCCACCACCGCAGTGCGGCAGGTCT
ACGCCAGCGAGTTGTTCTCGCAAGTGGCGCAAGGGGAGGAGGGAAAGGTT
CTCGCGCTGCTCCGGGTACACGGTACAGGACCTCTGAGTGGTAAAACCCC
TTGGGATGTGGCCACCACCGCAGTGCGGCAGGTCTACGCCAGCGAGTTGT
TCTCGCAAGTGGCGCAAGGGGAGGAGGGAAAGGTTCTCGCGCTGCTCCGG
GCCGGCGTGCGGGCAGACGTTACGGATGGGGGTTCTCGCTCCGACACGCC
TCTCCATTGGGCAGCGGGTGCCGGGCATGTGAGCCTTTGCTCGATCCTGC
TTGAGAACGGGGCGGACCTGACCCGCTGCAACAGCGAAGGCCGGCGTGCG
GGCAGACGTTACGGATGGGGGTTCTCGCTCCGACACGCCTCTCCATTGGG
CAGCGGGTGCCGGGCATGTGAGCCTTTGCTCGATCCTGCTTGAGAACGGG
GCGGACCTGACCCGCTGCAACAGCGAAGGAGCGAGTGCCCTCCACGAAGC
AAGCAAATGCGGGCACGCGGACGTGGTGTCCCTTCTACTGGAACGAGGCG
CGAACCCGCATGTAGTGGGTACTGCGGGCGAGTTCAAGGACAAGACCCCT
CTCCAGGAGCGAGTGCCCTCCACGAAGCAAGCAAATGCGGGCACGCGGAC
GTGGTGTCCCTTCTACTGGAACGAGGCGCGAACCCGCATGTAGTGGGTAC
TGCGGGCGAGTTCAAGGACAAGACCCCTCTCCAGGTATCTTCCGGCCAGG
CGGTGTCCGAAGCACTTCGGTCGCCGCTCCCACCGCCCCGCTCCGCGCCG
CCCCCTCCCGCGCCGCCCTCTGAAGGCCAACTCTCAGATGGATTAGAGGA
AACGCGCGTGCCTGGCGTTGGGGATGGTCTCGCGCGGCCGCTTGGTAGCG
GCGTCGCCGGTGGGGGCGAGGAGGAGTCGCTGGTCGAGGTGCGCCCAGAT
GGTCACCGCCGGCGCCGTGTAGAGCGGGGCTGGGAACAGGCCAAGGAGGA
GGAGGAGACGGGGGAGGAGGAGCGCAACGGGGAAGGCGGTCATGAGGGGC
GGGCGTCACTAGCTGCGGCAGGCGTTTCTCGTGGTGCCGCTGCCGCGAAG
GACAGCAGAGTATCTTCCGGCCAGGCGGTGTCCGAAGCACTTCGGTCGCC
GCTCCCACCGCCCCGCTCCGCGCCGCCCCCTCCCGCGCCGCCCTCTGAAG
GCCAACTCTCAGATGGATTAGAGGAAACGCGCGTGCCTGGCGTTGGGGAT
GGTCTCGCGCGGCCGCTTGGTAGCGGCGTCGCCGGTGGGGGCGAGGAGGA
GTCGCTGGTCGAGGTGCGCCCAGATGGTCACCGCCGGCGCCGTGTAGAGC
GGGGCTGGGAACAGGCCAAGGAGGAGGAGGAGACGGGGGAGGAGGAGCGC
AACGGGGAAGGCGGTCATGAGGGGCGGGCGTCACTAGCTGCGGCAGGCGT
TTCTCGTGGTGCCGCTGCCGCGAAGGACAGCAGA
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