|
Homology
BLAST of mRNA_L-elsbetiae_contig6.14512.1 vs. uniprot
Match: A0A7S3ZWW5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWW5_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 5.900e-5 Identity = 43/114 (37.72%), Postives = 56/114 (49.12%), Query Frame = 1
Query: 4 DGASALHISSMKGRIDASRALLRLGAAPEVHGTGPLSGKTPWDVATTAVRQVYASELFSQVAQGEEGKVLALLRA-GVRADVTDGGS-RSDTPLHWAAGAGHVSLCSILLENGA 339
D AS L + ++DA RALLR+GA P S W +A R +EL QVA G+ G+V LLR G ++D + D+PLHWAA G + LL GA
Sbjct: 71 DDASLLEKACSSNKVDAVRALLRVGAIPAA------STPVAWLEEGSACRAAAHAELMQQVALGDAGRVTKLLRLLGPIPRLSDAATFGGDSPLHWAASFGQETALEALLAAGA 178
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Metazoa |
Seed ortholog score | 70.1 |
Seed ortholog evalue | 1.9e-09 |
Seed eggNOG ortholog | 6500.XP_005110059.1 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | ankyrin repeats |
EggNOG OGs | 2RPUM@2759,39WIT@33154,3BJY1@33208,3D1JT@33213,COG0666@1 |
COG Functional cat. | S |
Best tax level | Bilateria |
Best eggNOG OG | NA|NA|NA |
Exons | 5 |
Model size | 868 |
Cds size | 867 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816652.4489172-CDS-L-elsbetiae_contig6:79209..79299 | 1622816652.4489172-CDS-L-elsbetiae_contig6:79209..79299 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6 79210..79299 + |
1691683714.1373513-CDS-L-elsbetiae_contig6:79209..79299 | 1691683714.1373513-CDS-L-elsbetiae_contig6:79209..79299 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6 79210..79299 + |
1622816652.4613855-CDS-L-elsbetiae_contig6:79744..79879 | 1622816652.4613855-CDS-L-elsbetiae_contig6:79744..79879 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6 79745..79879 + |
1691683714.1490312-CDS-L-elsbetiae_contig6:79744..79879 | 1691683714.1490312-CDS-L-elsbetiae_contig6:79744..79879 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6 79745..79879 + |
1622816652.4710944-CDS-L-elsbetiae_contig6:80415..80554 | 1622816652.4710944-CDS-L-elsbetiae_contig6:80415..80554 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6 80416..80554 + |
1691683714.1601334-CDS-L-elsbetiae_contig6:80415..80554 | 1691683714.1601334-CDS-L-elsbetiae_contig6:80415..80554 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6 80416..80554 + |
1622816652.4832602-CDS-L-elsbetiae_contig6:80954..81082 | 1622816652.4832602-CDS-L-elsbetiae_contig6:80954..81082 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6 80955..81082 + |
1691683714.1732137-CDS-L-elsbetiae_contig6:80954..81082 | 1691683714.1732137-CDS-L-elsbetiae_contig6:80954..81082 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6 80955..81082 + |
1622816652.495396-CDS-L-elsbetiae_contig6:81504..81879 | 1622816652.495396-CDS-L-elsbetiae_contig6:81504..81879 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6 81505..81879 + |
1691683714.1827333-CDS-L-elsbetiae_contig6:81504..81879 | 1691683714.1827333-CDS-L-elsbetiae_contig6:81504..81879 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6 81505..81879 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6.14512.1 >prot_L-elsbetiae_contig6.14512.1 ID=prot_L-elsbetiae_contig6.14512.1|Name=mRNA_L-elsbetiae_contig6.14512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=289bp
SDGASALHISSMKGRIDASRALLRLGAAPEVHGTGPLSGKTPWDVATTAV RQVYASELFSQVAQGEEGKVLALLRAGVRADVTDGGSRSDTPLHWAAGAG HVSLCSILLENGADLTRCNSEGASALHEASKCGHADVVSLLLERGANPHV VGTAGEFKDKTPLQVSSGQAVSEALRSPLPPPRSAPPPPAPPSEGQLSDG LEETRVPGVGDGLARPLGSGVAGGGEEESLVEVRPDGHRRRRVERGWEQA KEEEETGEEERNGEGGHEGRASLAAAGVSRGAAAAKDSR back to topmRNA from alignment at L-elsbetiae_contig6:79210..81880+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6.14512.1 ID=mRNA_L-elsbetiae_contig6.14512.1|Name=mRNA_L-elsbetiae_contig6.14512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2671bp|location=Sequence derived from alignment at L-elsbetiae_contig6:79210..81880+ (Laminarionema elsbetiae ELsaHSoW15) AGTGATGGGGCGTCTGCCCTGCACATTTCGAGCATGAAAGGCCGTATCGA
CGCCTCCCGTGCCCTCCTCAGGCTTGGTGCTGCCCCAGAGGTGAGCTGGA
TGCCCTATTGTGAGAATCGTGGCTCCTGTTGGTGAGCAAGCCAAGAAAGA
ACAGGGAGGAAACACCCCTTACCCTAAACATCCGCTGTGGTCTCTCAGTC
TTGTGTTCGGGTTGCGTTTTCGAGCTCTAGACTCATTTTTTGCAGACTCC
GCTTGTTGGCCTAGCCGGAATAAGTAAGTTGAGTGTCCTGTGTACTGCTG
AGAGGGAGATGTGTTTGTGATCCCAAAGTAATTGCATCGGGGGAGTTTTG
TTCGCCTGCTTCGCTCCCAAGCATGCCACAACCTGGAAGGAAGCTGTGAT
TTTTGCGGCAGAGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTGTA
TGTTTGCCAAAATCACAGACTAGTTGCATTCCAATGACCGACAGTAGTCA
CTTTCCTACTGACTGGCGGTTCGCCGTTCCTACAGGTACACGGTACAGGA
CCTCTGAGTGGTAAAACCCCTTGGGATGTGGCCACCACCGCAGTGCGGCA
GGTCTACGCCAGCGAGTTGTTCTCGCAAGTGGCGCAAGGGGAGGAGGGAA
AGGTTCTCGCGCTGCTCCGGGTAAGCGGACAGACTCTAGGTAACCTGATG
TGAGCTTGGGAACCCGGACAGCTAGGCAGCAATTGCAGAAAGGTAGTCTT
TGGGATGAGGTTTGCACGCCAATGTATGCTAGGTGTGCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTC
CCCCCCCCCTCCCCCNNNNNNNNNNGAGACAGTTAACGGAGGTGTGCTTT
TGGGGTGAGGGTTGGCCCCCCAGGGTTGGTAGGTTGGCCCCCCCCCCCCC
CCCCTCCCGTGCCGCCTTACCGCGCCTCTCAAAAACGTTTTGCCTTTTCA
TCACGGGCGAGAGAAAAATTTCCCGCGATCTTTTACAAGGGAGTTTTAAG
CGAGTATTCCGACCGGCCAGGGATTTGGTGGATAGAATCGCCGAGTTTCA
CGTCTGGCCAGTGCTTGCCTTCCCAACTGTAGATGGGCAACACAATGCCA
GTCAGTGCGCACACACCTCGGTGTGCTGCTACCTATGATTTTTTGTCTTG
GACCAGGCCGGCGTGCGGGCAGACGTTACGGATGGGGGTTCTCGCTCCGA
CACGCCTCTCCATTGGGCAGCGGGTGCCGGGCATGTGAGCCTTTGCTCGA
TCCTGCTTGAGAACGGGGCGGACCTGACCCGCTGCAACAGCGAAGGTGGG
TCGAAACCCCGGTCTGCATGGGTAGTTTTGGTGGTGTCCGCGACAGGGCG
GTATACCGGAGGTCGCGTAGTACATAGATGGTGCCACAGGCGCGTCGACC
GGCCGATGTTTTCAAAGCTCGGTAAGCCGAAAACCCGAGGGAGGGTGCCA
ACCGAGCGACAAGTTCATCAGACATTCCTCAAGGAAACACTTCCAAGGCC
GTTTGCGGTTTGGCAATTCGCATTGTCGTTGGTGTGGAGAAGTCGAGTTT
GGAGAAGTTGGTCCAGAGTGTGTGGTGACACGCGAGTGCGACTAACTGCG
TGTGCTTTTGCTGGAAGCAAGAAAGCGCGGGCAAGAAGCGCGAACTCCGA
GCTTATCGTTGACTTCTACACGTTCCTCCTTCTTGCGCTTTGCAGGAGCG
AGTGCCCTCCACGAAGCAAGCAAATGCGGGCACGCGGACGTGGTGTCCCT
TCTACTGGAACGAGGCGCGAACCCGCATGTAGTGGGTACTGCGGGCGAGT
TCAAGGACAAGACCCCTCTCCAGGCGAGTGGCGAGTCAGGACGCGCTTTT
CAGCTACTTTTTCGTGTTTCAAAGAGGGAAAACGAGCACAGACAGGGAGA
GGATCTGTTAAGGGTTGACCTCGAGTTGTTTGACCATTGACCACACGCAT
GCGAAAGGAGCTAGCACCTATGTTCCTACTCCGTCTAAAGGGGCCACCAT
TTTACGGGCATTCTCACATGATTTGCCACAAATTTCATGTACGAAAAGCG
TTATTTGTTATCTTGTCGCGGAAGTTGTGAGACACTATTGTGCGCCACAG
CGCCAAGGCAAAAAAGTGATGTTGAAAAAGGTTGTCGCGTGAACAGCGTA
TATATGTAACCCGTGCAGCGACCCGCCCGCCCGCCCGCCCGCCCTCGTGC
GCATGTTCTGTGGCCTGCCCGGCGCCCTCCCTCCCGCTGTCGCAGGTATC
TTCCGGCCAGGCGGTGTCCGAAGCACTTCGGTCGCCGCTCCCACCGCCCC
GCTCCGCGCCGCCCCCTCCCGCGCCGCCCTCTGAAGGCCAACTCTCAGAT
GGATTAGAGGAAACGCGCGTGCCTGGCGTTGGGGATGGTCTCGCGCGGCC
GCTTGGTAGCGGCGTCGCCGGTGGGGGCGAGGAGGAGTCGCTGGTCGAGG
TGCGCCCAGATGGTCACCGCCGGCGCCGTGTAGAGCGGGGCTGGGAACAG
GCCAAGGAGGAGGAGGAGACGGGGGAGGAGGAGCGCAACGGGGAAGGCGG
TCATGAGGGGCGGGCGTCACTAGCTGCGGCAGGCGTTTCTCGTGGTGCCG
CTGCCGCGAAGGACAGCAGAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6:79210..81880+ >mRNA_L-elsbetiae_contig6.14512.1 ID=mRNA_L-elsbetiae_contig6.14512.1|Name=mRNA_L-elsbetiae_contig6.14512.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1734bp|location=Sequence derived from alignment at L-elsbetiae_contig6:79210..81880+ (Laminarionema elsbetiae ELsaHSoW15) AGTGATGGGGCGTCTGCCCTGCACATTTCGAGCATGAAAGGCCGTATCGA CGCCTCCCGTGCCCTCCTCAGGCTTGGTGCTGCCCCAGAGAGTGATGGGG CGTCTGCCCTGCACATTTCGAGCATGAAAGGCCGTATCGACGCCTCCCGT GCCCTCCTCAGGCTTGGTGCTGCCCCAGAGGTACACGGTACAGGACCTCT GAGTGGTAAAACCCCTTGGGATGTGGCCACCACCGCAGTGCGGCAGGTCT ACGCCAGCGAGTTGTTCTCGCAAGTGGCGCAAGGGGAGGAGGGAAAGGTT CTCGCGCTGCTCCGGGTACACGGTACAGGACCTCTGAGTGGTAAAACCCC TTGGGATGTGGCCACCACCGCAGTGCGGCAGGTCTACGCCAGCGAGTTGT TCTCGCAAGTGGCGCAAGGGGAGGAGGGAAAGGTTCTCGCGCTGCTCCGG GCCGGCGTGCGGGCAGACGTTACGGATGGGGGTTCTCGCTCCGACACGCC TCTCCATTGGGCAGCGGGTGCCGGGCATGTGAGCCTTTGCTCGATCCTGC TTGAGAACGGGGCGGACCTGACCCGCTGCAACAGCGAAGGCCGGCGTGCG GGCAGACGTTACGGATGGGGGTTCTCGCTCCGACACGCCTCTCCATTGGG CAGCGGGTGCCGGGCATGTGAGCCTTTGCTCGATCCTGCTTGAGAACGGG GCGGACCTGACCCGCTGCAACAGCGAAGGAGCGAGTGCCCTCCACGAAGC AAGCAAATGCGGGCACGCGGACGTGGTGTCCCTTCTACTGGAACGAGGCG CGAACCCGCATGTAGTGGGTACTGCGGGCGAGTTCAAGGACAAGACCCCT CTCCAGGAGCGAGTGCCCTCCACGAAGCAAGCAAATGCGGGCACGCGGAC GTGGTGTCCCTTCTACTGGAACGAGGCGCGAACCCGCATGTAGTGGGTAC TGCGGGCGAGTTCAAGGACAAGACCCCTCTCCAGGTATCTTCCGGCCAGG CGGTGTCCGAAGCACTTCGGTCGCCGCTCCCACCGCCCCGCTCCGCGCCG CCCCCTCCCGCGCCGCCCTCTGAAGGCCAACTCTCAGATGGATTAGAGGA AACGCGCGTGCCTGGCGTTGGGGATGGTCTCGCGCGGCCGCTTGGTAGCG GCGTCGCCGGTGGGGGCGAGGAGGAGTCGCTGGTCGAGGTGCGCCCAGAT GGTCACCGCCGGCGCCGTGTAGAGCGGGGCTGGGAACAGGCCAAGGAGGA GGAGGAGACGGGGGAGGAGGAGCGCAACGGGGAAGGCGGTCATGAGGGGC GGGCGTCACTAGCTGCGGCAGGCGTTTCTCGTGGTGCCGCTGCCGCGAAG GACAGCAGAGTATCTTCCGGCCAGGCGGTGTCCGAAGCACTTCGGTCGCC GCTCCCACCGCCCCGCTCCGCGCCGCCCCCTCCCGCGCCGCCCTCTGAAG GCCAACTCTCAGATGGATTAGAGGAAACGCGCGTGCCTGGCGTTGGGGAT GGTCTCGCGCGGCCGCTTGGTAGCGGCGTCGCCGGTGGGGGCGAGGAGGA GTCGCTGGTCGAGGTGCGCCCAGATGGTCACCGCCGGCGCCGTGTAGAGC GGGGCTGGGAACAGGCCAAGGAGGAGGAGGAGACGGGGGAGGAGGAGCGC AACGGGGAAGGCGGTCATGAGGGGCGGGCGTCACTAGCTGCGGCAGGCGT TTCTCGTGGTGCCGCTGCCGCGAAGGACAGCAGA back to top
|