mRNA_L-elsbetiae_contig6.14509.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6.14509.1
Unique NamemRNA_L-elsbetiae_contig6.14509.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6.14509.1 vs. uniprot
Match: D7FQU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQU3_ECTSI)

HSP 1 Score: 484 bits (1247), Expect = 1.740e-171
Identity = 249/287 (86.76%), Postives = 269/287 (93.73%), Query Frame = 1 
Query:    1 GTTPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVASALIPLSQALYANGDLEPARETCTRALKILQMAFGQSPTAEMAEALHTLAMIQQAESPQIGDKALGSQNMAYELAVRVCGPESVEVAAYARCLAQMSEDYSQFLSAGLPRPFYMPNPVPLYRQTLAIIEKVMGSEDQSVASALDDLASALLFHRDDDYTDMKAVTLLPEAETLAARSLAISRTSLGEEHPITAGREHNLGMVKRGLQKPEESLDCFRRALAIREKVLGSDHPDTKSSKELVEEEEKSAAGKP 861
            G  PEEMMRQMSIPDLAQKLDQAESTFGQVHPQVA+ALIPLSQALYANGDL PAR++CTRAL+ILQMA+ + P+ EMAEALHTLAMIQQAESP++GDKALGSQNMA ELA+RV GP+SVEVAAYARCLAQMSEDYSQFLS GLPRPFYMPNP+PLYRQTL+IIEKV+G +D SVASALDDLASALLFHRDDDYT+MKAVTLLPEAETLAARSLAISR SLGEEHPITAGREHNLGM+KRGLQKP+ESLDCFRRALAIREKVLG DHPD+KSS+ELVEEEE   A  P
Sbjct:    4 GADPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQMAYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLAARSLAISRASLGEEHPITAGREHNLGMIKRGLQKPKESLDCFRRALAIREKVLGVDHPDSKSSRELVEEEESGTAPPP 290
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BLAST of mRNA_L-elsbetiae_contig6.14509.1 vs. uniprot
Match: A0A6H5JTH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH5_9PHAE)

HSP 1 Score: 484 bits (1247), Expect = 5.080e-170
Identity = 249/287 (86.76%), Postives = 268/287 (93.38%), Query Frame = 1 
Query:    1 GTTPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVASALIPLSQALYANGDLEPARETCTRALKILQMAFGQSPTAEMAEALHTLAMIQQAESPQIGDKALGSQNMAYELAVRVCGPESVEVAAYARCLAQMSEDYSQFLSAGLPRPFYMPNPVPLYRQTLAIIEKVMGSEDQSVASALDDLASALLFHRDDDYTDMKAVTLLPEAETLAARSLAISRTSLGEEHPITAGREHNLGMVKRGLQKPEESLDCFRRALAIREKVLGSDHPDTKSSKELVEEEEKSAAGKP 861
            GT PEEMMRQMSIPDLAQKLDQAESTFGQVHPQVA+ALIPLSQALYANGDL PAR++CTRAL+ILQ A+ + P+ EMAEALHTLAMIQQAESP++GDKALGSQNMA ELA+RV GP+SVEVAAYARCLAQMSEDYSQFLS GLPRPFYMPNP+PLYRQTL+IIEKV+G +D SVASALDDLASALLFHRDDDYT+MKAVTLLPEAETLA RSLAISR SLGEEHPITAGREHNLGM+KRGLQKP+ESLDCFRRALAIREKVLG DHPDTKSS+ELVEEEE   A  P
Sbjct:   98 GTNPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQRAYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLATRSLAISRASLGEEHPITAGREHNLGMIKRGLQKPKESLDCFRRALAIREKVLGVDHPDTKSSRELVEEEESGTAPPP 384
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BLAST of mRNA_L-elsbetiae_contig6.14509.1 vs. uniprot
Match: A0A433Q9T8_9FUNG (Tfp pilus assembly protein PilF n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q9T8_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 8.450e-6
Identity = 45/152 (29.61%), Postives = 73/152 (48.03%), Query Frame = 1 
Query:  460 PLYRQTLAIIEKVMGSEDQSVASALDDLAS-----------------------------ALLFHRDDDYTDMKAVTLLPEAETLAA----RSLAISRTSLGEEHPITAGREHNLGMVKRGLQKPEESLDCFRRALAIREKVLGSDHPDTKSS 816
            PLY Q LAI EKV+GSE+Q +A  L++LA                              A+ +     Y   +++  +    TL++     ++  ++  L  E P+ A    +LG++    +K  ++   +++ALAIREKVLGS+HPD  SS
Sbjct:   39 PLYEQALAISEKVLGSENQEMAIFLNNLAGFYSPGQVRQGGATVRTGTGDPYGNISNNLAMFYWDQGKYDKGESLVRINAPYTLSSLNNLANIYRNQDMLRSERPLIATILGSLGVLYESQRKYGKAEPLYKKALAIREKVLGSEHPDMASS 190
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6.14509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQU3_ECTSI1.740e-17186.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTH5_9PHAE5.080e-17086.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A433Q9T8_9FUNG8.450e-629.61Tfp pilus assembly protein PilF n=1 Tax=Jimgerdema... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6contigL-elsbetiae_contig6:22169..24935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score485.3
Seed ortholog evalue1.9e-134
Seed eggNOG ortholog2880.D7FQU3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-16_000740.1
Exons6
Model size870
Cds size852
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6.14509.1prot_L-elsbetiae_contig6.14509.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6 22187..24935 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816651.4317849-UTR-L-elsbetiae_contig6:22168..221861622816651.4317849-UTR-L-elsbetiae_contig6:22168..22186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6 22169..22186 +
1691683713.1819646-UTR-L-elsbetiae_contig6:22168..221861691683713.1819646-UTR-L-elsbetiae_contig6:22168..22186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6 22169..22186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816651.4421456-CDS-L-elsbetiae_contig6:22186..222671622816651.4421456-CDS-L-elsbetiae_contig6:22186..22267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 22187..22267 +
1691683713.192699-CDS-L-elsbetiae_contig6:22186..222671691683713.192699-CDS-L-elsbetiae_contig6:22186..22267Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 22187..22267 +
1622816651.4519298-CDS-L-elsbetiae_contig6:22759..228881622816651.4519298-CDS-L-elsbetiae_contig6:22759..22888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 22760..22888 +
1691683713.2021966-CDS-L-elsbetiae_contig6:22759..228881691683713.2021966-CDS-L-elsbetiae_contig6:22759..22888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 22760..22888 +
1622816651.4654343-CDS-L-elsbetiae_contig6:23213..233091622816651.4654343-CDS-L-elsbetiae_contig6:23213..23309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 23214..23309 +
1691683713.2149343-CDS-L-elsbetiae_contig6:23213..233091691683713.2149343-CDS-L-elsbetiae_contig6:23213..23309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 23214..23309 +
1622816651.4808168-CDS-L-elsbetiae_contig6:23857..240521622816651.4808168-CDS-L-elsbetiae_contig6:23857..24052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 23858..24052 +
1691683713.2256992-CDS-L-elsbetiae_contig6:23857..240521691683713.2256992-CDS-L-elsbetiae_contig6:23857..24052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 23858..24052 +
1622816651.4963822-CDS-L-elsbetiae_contig6:24230..244541622816651.4963822-CDS-L-elsbetiae_contig6:24230..24454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 24231..24454 +
1691683713.237078-CDS-L-elsbetiae_contig6:24230..244541691683713.237078-CDS-L-elsbetiae_contig6:24230..24454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 24231..24454 +
1622816651.50587-CDS-L-elsbetiae_contig6:24808..249351622816651.50587-CDS-L-elsbetiae_contig6:24808..24935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 24809..24935 +
1691683713.2479842-CDS-L-elsbetiae_contig6:24808..249351691683713.2479842-CDS-L-elsbetiae_contig6:24808..24935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 24809..24935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6.14509.1

>prot_L-elsbetiae_contig6.14509.1 ID=prot_L-elsbetiae_contig6.14509.1|Name=mRNA_L-elsbetiae_contig6.14509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=284bp
MMRQMSIPDLAQKLDQAESTFGQVHPQVASALIPLSQALYANGDLEPARE
TCTRALKILQMAFGQSPTAEMAEALHTLAMIQQAESPQIGDKALGSQNMA
YELAVRVCGPESVEVAAYARCLAQMSEDYSQFLSAGLPRPFYMPNPVPLY
RQTLAIIEKVMGSEDQSVASALDDLASALLFHRDDDYTDMKAVTLLPEAE
TLAARSLAISRTSLGEEHPITAGREHNLGMVKRGLQKPEESLDCFRRALA
IREKVLGSDHPDTKSSKELVEEEEKSAAGKPDA*
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mRNA from alignment at L-elsbetiae_contig6:22169..24935+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6.14509.1 ID=mRNA_L-elsbetiae_contig6.14509.1|Name=mRNA_L-elsbetiae_contig6.14509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2767bp|location=Sequence derived from alignment at L-elsbetiae_contig6:22169..24935+ (Laminarionema elsbetiae ELsaHSoW15)
GGTACAACCCCGGAAGAGATGATGAGACAGATGTCTATCCCTGATCTGGC
ACAGAAGCTAGACCAAGCTGAGAGTACCTTCGGCCAAGTGCACCCACAGG
TACGCCGTCTAGCCCACCAGTCGAGAATCTACGGGGGGCAGCTTGCTGTT
ATTTTTCATCACAAAAAAAACAGCGCTCGAAGGGCATCGTGCCAGAGTTC
TGAACCGTGGTCCTCTTAATCATCAAATTGTATACTCCCCTCACATTTTT
CATGCACGCTTATCGCAAGGGGCTCTGGCGTGTACTCTATGGTGGCACCC
AAGAAAGAGCCGTGTCAGCGCACGGAAAGCGCCCTTTCGGTTTTGGCTCT
TGGCGTGCTGCGCGAGGATACATACTAACGTTTATGTGTACAGGACTTTT
CCATGATCGTTTGATTTTCCTCGGAAGTAAACATCACGGACTCTACGCCA
CATATGTTTCCGAGCGAGACGAGTCCTAGCTAGCTATTTAGCTACCCAGC
GAGCTCTGCCGTCCGCACCACGTGCGATAAGCGTTCACCACCGCCACGTA
TTCGCCCTCCCCGTGTGGTGGCGGTATGGATCATGTTTCAGGTGGCGTCA
GCTCTGATCCCTCTGTCTCAGGCACTCTACGCGAACGGGGATTTAGAGCC
CGCCCGAGAAACGTGCACTCGTGCACTCAAGATTCTGCAGATGGCTTTTG
GGCAGTCACCAACAGCAGAGGTTAGTTTCTTGGAATACTCCTAAGCTAGG
TCGTAGCCTACGTCTAGATTGATTTCGCTACTTGCAGGGCAAGTCCCCCT
CGTGCTCAGCTGAGCGGATAGGCTGTTTTGGAAAGCACATGGTATACGAT
GCTATGTATGCCAGTATCCGACAGTTTTGCCAATCGTCTAGGTGCGGTGA
TTGCCACCTACTGACGTAAATAGAGTTTAACAGCGTTGTCCAGATGAGAA
ATAACGGTCACGAGGTACCAACAGGCAACGCGTGTGCTCAATTTTGTGCA
ACTCTTGCATGCCCCGTCTGGTGTCCTGTGTTCGTCTCACGGCAGATGGC
AGAGGCTCTCCACACACTTGCGATGATACAGCAGGCAGAGAGCCCGCAGA
TCGGAGACAAGGCTTTGGGATCGCAGAATATGGCATACGAGGTGAGAAAG
AGGGGGCGAGGTGGGAGAGAGGGGACCTACAAGTAGGGGTTAGTTGTATG
AGGAGAGGTGAGAAAGTTTGTCGAATGTGTGTGGGCAGCTAGCTCAACGT
GTGTTATGTGTTGCAGTTTTGCGCGTTTTGCTTTGAGGTTGAGACGGTCA
GGAGTTAAATCAGTGGTTTTAGCTGATCACTTCGCAACCTCATAGTGCCT
ACCCAATGCTTATTGCATGCCCAGCGGTTCACTCCGCATCAAGGCGCGCG
CGTCTATCAAACGACAGTTTGCGTCTGTGGTGTTCAGTTAGGCTCCCTCA
ACTGTGTGCCTATAACTCTAGCACATCATTCCAATGGGTCAACGGAGTTG
TCGCGAGTGCTGATTGTTGTTTCGCTGTGTCCTCACTCGTCGTATGCATA
CTTTTGTCCCTGCACTGTGGCCCGATTCGTGTCTTGTTTTTTTTACTCTC
TTTACCCCCAACATATAATCTTCTCTCTCTTGGCAGCCTCATTAACCTTG
CGTCTCGCGCTGTGATGGCAACATTTTCGCTGTGTGCAGCTCGCGGTGCG
CGTTTGTGGTCCGGAATCCGTAGAGGTTGCAGCGTACGCCCGCTGCCTGG
CTCAAATGTCCGAGGACTATTCCCAGTTCCTATCCGCCGGCCTTCCACGG
CCGTTCTACATGCCCAACCCGGTGCCACTGTACCGCCAAACACTTGCTAT
CATCGAGAAGGTTATGGGATCCGAAGACCAGTCGGTGAGTCGTTTTTTCG
ATCGCTGAGACGTCCCATGCTCTTGTCGCACAGCCTGGCTGGATCTACGC
CCAGCTTGCTACGAATATCCTCCGTCGGTGCTCTCGATCGTTTTATTCCT
GCTATGCGGGGCTGCTACACAATATCCTTGGCGCATTTGAACCTCCGTCC
TGGTACGCGTAGGTGGCGTCCGCACTGGATGACTTGGCGAGCGCCCTTCT
TTTCCATCGCGACGACGACTACACGGACATGAAAGCAGTAACCCTTCTCC
CCGAGGCAGAAACCCTCGCTGCTCGCTCTCTAGCTATTTCGAGGACATCC
CTCGGCGAGGAACACCCGATAACGGCCGGGAGAGAGCACAACTTAGGCAT
GGTCAAGAGAGGACTACAAAAGCCGGAAGAATCCCTGTGAGCACGCACCC
CCGTCTTGATATGTGTCTGTGATGCACTATTAGCCCCGCTTGTCATGCGG
CTGTCCTGTGGTGCAGCGTCGATGCTAGCGTTCAGCTCCTCTCTTTTGTT
CTCGTGGTCCGACAAGAGCTTCACGTGTTGTCGGATCAACAATTCCTCAG
CGACAGCTTAAATTAAATAGGAGCAGGTTTGTGTTTAATAGATCATGCAT
GCACACAGCAAAATATACCTCCCCGAGCCTGCTGTCTATACAGACACAGA
ATATGCTTTGGTTTTCTGTTTGCAGCTGATTTGACCTCCCGCCGCCCTCT
CTCTTCGACGGTGTTTGCTCGCCGTGGTTACACTCGTCAGGGATTGCTTC
CGACGAGCTCTGGCAATCCGGGAAAAGGTTTTAGGTTCAGATCACCCAGA
CACAAAATCATCGAAGGAGTTGGTGGAAGAAGAGGAGAAGAGCGCGGCGG
GAAAACCCGATGCGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6:22169..24935+

>mRNA_L-elsbetiae_contig6.14509.1 ID=mRNA_L-elsbetiae_contig6.14509.1|Name=mRNA_L-elsbetiae_contig6.14509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1704bp|location=Sequence derived from alignment at L-elsbetiae_contig6:22169..24935+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGAGACAGATGTCTATCCCTGATCTGGCACAGAAGCTAGACCAAGC
TGAGAGTACCTTCGGCCAAGTGCACCCACAGATGATGAGACAGATGTCTA
TCCCTGATCTGGCACAGAAGCTAGACCAAGCTGAGAGTACCTTCGGCCAA
GTGCACCCACAGGTGGCGTCAGCTCTGATCCCTCTGTCTCAGGCACTCTA
CGCGAACGGGGATTTAGAGCCCGCCCGAGAAACGTGCACTCGTGCACTCA
AGATTCTGCAGATGGCTTTTGGGCAGTCACCAACAGCAGAGGTGGCGTCA
GCTCTGATCCCTCTGTCTCAGGCACTCTACGCGAACGGGGATTTAGAGCC
CGCCCGAGAAACGTGCACTCGTGCACTCAAGATTCTGCAGATGGCTTTTG
GGCAGTCACCAACAGCAGAGATGGCAGAGGCTCTCCACACACTTGCGATG
ATACAGCAGGCAGAGAGCCCGCAGATCGGAGACAAGGCTTTGGGATCGCA
GAATATGGCATACGAGATGGCAGAGGCTCTCCACACACTTGCGATGATAC
AGCAGGCAGAGAGCCCGCAGATCGGAGACAAGGCTTTGGGATCGCAGAAT
ATGGCATACGAGCTCGCGGTGCGCGTTTGTGGTCCGGAATCCGTAGAGGT
TGCAGCGTACGCCCGCTGCCTGGCTCAAATGTCCGAGGACTATTCCCAGT
TCCTATCCGCCGGCCTTCCACGGCCGTTCTACATGCCCAACCCGGTGCCA
CTGTACCGCCAAACACTTGCTATCATCGAGAAGGTTATGGGATCCGAAGA
CCAGTCGCTCGCGGTGCGCGTTTGTGGTCCGGAATCCGTAGAGGTTGCAG
CGTACGCCCGCTGCCTGGCTCAAATGTCCGAGGACTATTCCCAGTTCCTA
TCCGCCGGCCTTCCACGGCCGTTCTACATGCCCAACCCGGTGCCACTGTA
CCGCCAAACACTTGCTATCATCGAGAAGGTTATGGGATCCGAAGACCAGT
CGGTGGCGTCCGCACTGGATGACTTGGCGAGCGCCCTTCTTTTCCATCGC
GACGACGACTACACGGACATGAAAGCAGTAACCCTTCTCCCCGAGGCAGA
AACCCTCGCTGCTCGCTCTCTAGCTATTTCGAGGACATCCCTCGGCGAGG
AACACCCGATAACGGCCGGGAGAGAGCACAACTTAGGCATGGTCAAGAGA
GGACTACAAAAGCCGGAAGAATCCCTGTGGCGTCCGCACTGGATGACTTG
GCGAGCGCCCTTCTTTTCCATCGCGACGACGACTACACGGACATGAAAGC
AGTAACCCTTCTCCCCGAGGCAGAAACCCTCGCTGCTCGCTCTCTAGCTA
TTTCGAGGACATCCCTCGGCGAGGAACACCCGATAACGGCCGGGAGAGAG
CACAACTTAGGCATGGTCAAGAGAGGACTACAAAAGCCGGAAGAATCCCT
GGATTGCTTCCGACGAGCTCTGGCAATCCGGGAAAAGGTTTTAGGTTCAG
ATCACCCAGACACAAAATCATCGAAGGAGTTGGTGGAAGAAGAGGAGAAG
AGCGCGGCGGGAAAACCCGATGCGTAGGGATTGCTTCCGACGAGCTCTGG
CAATCCGGGAAAAGGTTTTAGGTTCAGATCACCCAGACACAAAATCATCG
AAGGAGTTGGTGGAAGAAGAGGAGAAGAGCGCGGCGGGAAAACCCGATGC
GTAG
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