mRNA_L-elsbetiae_contig5943.14432.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5943.14432.1
Unique NamemRNA_L-elsbetiae_contig5943.14432.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5943.14432.1 vs. uniprot
Match: A0A6H5K062_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K062_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 1.280e-61
Identity = 101/152 (66.45%), Postives = 122/152 (80.26%), Query Frame = 1
Query:    7 SLFDGTCKKCFVRGQDQRRELKVYTEHYNRALGQDGQPKSGQQNRDLMDEVIKELWTTKNKDSANKAYQQGLKKRQEALTRKAGTRDPEEVARIKIPDVPDLEKLRAREQPEGWLPPAFFTWLLYGPLSENPDEDISFQESNGPEGAVESDD 462
            SLFDGT KKC+ RGQ+QRRELK+YT+H+N A  + GQPKSGQQN DLM EVI  +W  KN+DSA+KA +Q  KKR EAL ++A T+D ++  +IKIP VPDL KL AREQPEGWLPP +FTWLLYGPLS  PD+D+SF+ESNGP GA E +D
Sbjct:   53 SLFDGTLKKCYARGQEQRRELKIYTQHFNTATNEHGQPKSGQQNGDLMVEVIALIWEDKNRDSAHKAVKQATKKRNEALAKRANTKDNDKATKIKIPVVPDLTKLLAREQPEGWLPPCWFTWLLYGPLSPCPDDDVSFRESNGPAGAGECED 204          
BLAST of mRNA_L-elsbetiae_contig5943.14432.1 vs. uniprot
Match: A0A6H5KGS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS2_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 7.140e-38
Identity = 69/136 (50.74%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   34 CFVRGQDQRRELKVYTEHYNRALGQDGQPKSGQQNRDLMDEVIKELWTTKNKDSANKAYQQGLKKRQEALTRKAGTRDPEEVARIKIPDVPDLEKLRAREQPEGWLPPAFFTWLLYGPLSENPDEDISFQESNGPE 441
            C+ RGQ+QRRELK YT H+N A  + GQPKSG+QN D+M EVI ++W  + +D+ANK  ++  +KR++AL +K+ T++P    +I+IP +P+ ++L  ++ P+ +LPP +FTWLLYGPL+ NP+EDISF  SNGP+
Sbjct:   29 CWTRGQEQRRELKNYTAHFNSATNEHGQPKSGEQNGDVMLEVIGKVWEDQVEDAANKKIKEAERKRRQALQKKSKTKNPRIAEQIEIPTIPNRDELLDKDMPDNFLPPYWFTWLLYGPLAANPEEDISFTASNGPD 164          
BLAST of mRNA_L-elsbetiae_contig5943.14432.1 vs. uniprot
Match: A0A6H5JWG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG3_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 9.440e-38
Identity = 72/134 (53.73%), Postives = 99/134 (73.88%), Query Frame = 1
Query:   40 VRGQDQRRELKVYTEHYNRALGQDGQPKSGQQNRDLMDEVIKELWTTKNKDSANKAYQQGLKKRQEALTRKAGTRDPEEVARIKIPDVPDLEKLRAREQPEGWLPPAFFTWLLYGPLSENPDEDISFQESNGPE 441
            +RGQ+QRRELK YT HYN A  + GQP+SG+QN D+M EVI+++W  + KD+AN+  ++  KKR+EAL +K  T++P     I IP +P+ + L  +E PE +LPP +FTWLLYGPL+ NPDED+SF  SNGP+
Sbjct:    1 MRGQEQRRELKNYTVHYNSATNEQGQPRSGEQNGDVMMEVIEKVWEDQVKDAANRKIKEVEKKRREALQKKRQTQNPRLAEMITIPTIPNRDDLLNKELPENFLPPYWFTWLLYGPLAANPDEDVSFTASNGPD 134          
BLAST of mRNA_L-elsbetiae_contig5943.14432.1 vs. uniprot
Match: A0A6H5KKU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU5_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 9.480e-38
Identity = 72/134 (53.73%), Postives = 99/134 (73.88%), Query Frame = 1
Query:   40 VRGQDQRRELKVYTEHYNRALGQDGQPKSGQQNRDLMDEVIKELWTTKNKDSANKAYQQGLKKRQEALTRKAGTRDPEEVARIKIPDVPDLEKLRAREQPEGWLPPAFFTWLLYGPLSENPDEDISFQESNGPE 441
            +RGQ+QRRELK YT HYN A  + GQP+SG+QN D+M EVI+++W  + KD+AN+  ++  KKR+EAL +K  T++P     I IP +P+ + L  +E PE +LPP +FTWLLYGPL+ NPDED+SF  SNGP+
Sbjct:    1 MRGQEQRRELKKYTVHYNSATNEQGQPRSGEQNGDVMMEVIEKVWEDQVKDAANRKIKEVEKKRREALQKKRQTQNPRLAEMITIPTIPNRDDLLNKELPENFLPPYWFTWLLYGPLAANPDEDVSFTASNGPD 134          
BLAST of mRNA_L-elsbetiae_contig5943.14432.1 vs. uniprot
Match: A0A6H5KPH1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH1_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.070e-35
Identity = 67/134 (50.00%), Postives = 95/134 (70.90%), Query Frame = 1
Query:   40 VRGQDQRRELKVYTEHYNRALGQDGQPKSGQQNRDLMDEVIKELWTTKNKDSANKAYQQGLKKRQEALTRKAGTRDPEEVARIKIPDVPDLEKLRAREQPEGWLPPAFFTWLLYGPLSENPDEDISFQESNGPE 441
            +RGQ+QRRELK +      A  + GQP+SG+QN D+M EVI+++W  + KD+AN+  ++  KKR+EAL +K  T++P     I IP +P+ + L  +E PE +LPP +FTWLLYGPL+ NPDED+SF  SNGP+
Sbjct:    1 MRGQEQRRELKXFVLQV--ATNEQGQPRSGEQNGDVMMEVIEKVWEDQVKDAANRKIKEVEKKRREALQKKRQTQNPRLAEMITIPTIPNRDDLLNKELPENFLPPYWFTWLLYGPLAANPDEDVSFTASNGPD 132          
BLAST of mRNA_L-elsbetiae_contig5943.14432.1 vs. uniprot
Match: A0A6H5JX17_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX17_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.310e-21
Identity = 43/96 (44.79%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  154 EVIKELWTTKNKDSANKAYQQGLKKRQEALTRKAGTRDPEEVARIKIPDVPDLEKLRAREQPEGWLPPAFFTWLLYGPLSENPDEDISFQESNGPE 441
            EVI ++W  + +D+ANK  +   +KR++AL +++ T++P    +I+IP +P+ ++L  ++ P+ +LPP  FTWLLYGPL+ NP+EDISF  SNGP+
Sbjct:    3 EVIGKVWEDQVEDAANKKIKMAERKRRQALQKQSKTKNPRIAEQIEIPTIPNRDELLDKDMPDSFLPPYCFTWLLYGPLAANPEEDISFTASNGPD 98          
BLAST of mRNA_L-elsbetiae_contig5943.14432.1 vs. uniprot
Match: A0A6H5KPI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPI5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.330e-21
Identity = 49/98 (50.00%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  148 MDEVIKELWTTKNKDSANKAYQQGLKKRQEALTRKAGTRDPEEVARIKIPDVPDLEKLRAREQPEGWLPPAFFTWLLYGPLSENPDEDISFQESNGPE 441
            M EVI+++W  + KD+AN+  ++  KKR+EAL +K  T++P     I IP +P+ + L  +E PE +LPP +FTWLLYGPL+ NPDED+SF  SNGP+
Sbjct:    1 MMEVIEKVWEDQVKDAANRKIKEVEKKRREALQKKRQTQNPRLAEMITIPTIPNRDDLLNKELPENFLPPYWFTWLLYGPLAANPDEDVSFTASNGPD 98          
BLAST of mRNA_L-elsbetiae_contig5943.14432.1 vs. uniprot
Match: A0A6H5JSA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 6.390e-12
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   58 RRELKVYTEHYNRALGQDGQPKSGQQNRDLMDEVIKELWTTKNKDSANKAYQQGLKKRQEALTRKAGTRDP 270
            RRE+K YT HYN+   + GQPKSGQQN D+M EVI++ W  + +++A K  ++  KK++EAL RKA  + P
Sbjct:    2 RREVKNYTVHYNKVTNEQGQPKSGQQNGDVMLEVIEKGWNDQVEEAATKKMKETRKKQREALERKAKQKSP 72          
BLAST of mRNA_L-elsbetiae_contig5943.14432.1 vs. uniprot
Match: A0A6H5KWI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI7_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 3.790e-6
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    4 YSLFDGTCKKCFVRGQDQRRELKVYTEHYN 93
            + LFDGT KKC+ RGQ+QRRELK+YT+H+N
Sbjct:    4 WHLFDGTLKKCYARGQEQRRELKIYTQHFN 33          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5943.14432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K062_9PHAE1.280e-6166.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGS2_9PHAE7.140e-3850.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWG3_9PHAE9.440e-3853.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKU5_9PHAE9.480e-3853.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPH1_9PHAE7.070e-3550.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JX17_9PHAE2.310e-2144.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KPI5_9PHAE2.330e-2150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSA6_9PHAE6.390e-1249.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWI7_9PHAE3.790e-670.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5943contigL-elsbetiae_contig5943:9104..10060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size472
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.440882-CDS-L-elsbetiae_contig5943:9103..91981622816643.440882-CDS-L-elsbetiae_contig5943:9103..9198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5943 9104..9198 +
1691683707.2235456-CDS-L-elsbetiae_contig5943:9103..91981691683707.2235456-CDS-L-elsbetiae_contig5943:9103..9198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5943 9104..9198 +
1622816643.4543343-CDS-L-elsbetiae_contig5943:9684..100601622816643.4543343-CDS-L-elsbetiae_contig5943:9684..10060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5943 9685..10060 +
1691683707.2323067-CDS-L-elsbetiae_contig5943:9684..100601691683707.2323067-CDS-L-elsbetiae_contig5943:9684..10060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5943 9685..10060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5943.14432.1prot_L-elsbetiae_contig5943.14432.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5943 9104..10060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5943.14432.1

>prot_L-elsbetiae_contig5943.14432.1 ID=prot_L-elsbetiae_contig5943.14432.1|Name=mRNA_L-elsbetiae_contig5943.14432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
NYSLFDGTCKKCFVRGQDQRRELKVYTEHYNRALGQDGQPKSGQQNRDLM
DEVIKELWTTKNKDSANKAYQQGLKKRQEALTRKAGTRDPEEVARIKIPD
VPDLEKLRAREQPEGWLPPAFFTWLLYGPLSENPDEDISFQESNGPEGAV
ESDDNPE
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mRNA from alignment at L-elsbetiae_contig5943:9104..10060+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5943.14432.1 ID=mRNA_L-elsbetiae_contig5943.14432.1|Name=mRNA_L-elsbetiae_contig5943.14432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=957bp|location=Sequence derived from alignment at L-elsbetiae_contig5943:9104..10060+ (Laminarionema elsbetiae ELsaHSoW15)
AATTACAGCCTCTTTGATGGGACCTGTAAGAAGTGCTTCGTTCGGGGTCA GGATCAGCGCCGTGAACTGAAGGTCTACACAGAACACTACAACAGGTATG TCGGGGAATGAAGAGTTTAGGGGAGGTGTCTCTCTACTAATGCATGATTG CGGTAGGTAACATGCAAGAGATGCAACCCAATGTAGAGATAGCACCCATC ACGGGAAAGATGGCACTGGGGCGAGGTACCTATCAAGAGATACAATCTTT TATTTCGATTTTCGCACGCCCATCGGAAAGGGTGCTACTACTCTGATGAT GAAAATCCCATGTTGCAGGTTAGGTTTAGGTAGGAAAAATTGGAATTCGT TCTTGTTTTGGTAGTATTCCTCGTTGAAACTCGGCCGGGCTTGCTGCCCT AATCTCGACGTACTCGCACGTCCTCGTCTCCATCTGTCGCTCGCTGACGG TACTATTGAACTGGTAAAAATGGGTGTCGCACGTATTGGAGGCACCCTAT TGCTCGTCAACACCAACGAAACACACACACTCATCGCAGATATTGCATAC CCTGTCTTCCTCGCTGGTTGTGCGTACGCAGAGCTTTGGGCCAAGACGGG CAACCAAAGTCGGGACAGCAAAACCGCGACCTCATGGACGAGGTCATCAA AGAGCTTTGGACCACCAAGAACAAGGACTCCGCCAACAAGGCATACCAGC AGGGGTTGAAGAAACGGCAGGAGGCGTTGACTCGTAAGGCCGGAACCAGG GACCCGGAGGAGGTCGCTAGGATCAAGATCCCTGATGTCCCAGACTTAGA GAAGCTTCGGGCGAGGGAGCAACCCGAGGGCTGGCTCCCACCTGCGTTTT TCACGTGGCTGCTATACGGACCGTTGAGCGAAAACCCGGACGAGGACATT TCGTTCCAGGAAAGCAACGGCCCGGAAGGTGCTGTGGAGAGCGACGACAA CCCAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5943:9104..10060+

>mRNA_L-elsbetiae_contig5943.14432.1 ID=mRNA_L-elsbetiae_contig5943.14432.1|Name=mRNA_L-elsbetiae_contig5943.14432.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig5943:9104..10060+ (Laminarionema elsbetiae ELsaHSoW15)
AATTACAGCCTCTTTGATGGGACCTGTAAGAAGTGCTTCGTTCGGGGTCA
GGATCAGCGCCGTGAACTGAAGGTCTACACAGAACACTACAACAGAATTA
CAGCCTCTTTGATGGGACCTGTAAGAAGTGCTTCGTTCGGGGTCAGGATC
AGCGCCGTGAACTGAAGGTCTACACAGAACACTACAACAGAGCTTTGGGC
CAAGACGGGCAACCAAAGTCGGGACAGCAAAACCGCGACCTCATGGACGA
GGTCATCAAAGAGCTTTGGACCACCAAGAACAAGGACTCCGCCAACAAGG
CATACCAGCAGGGGTTGAAGAAACGGCAGGAGGCGTTGACTCGTAAGGCC
GGAACCAGGGACCCGGAGGAGGTCGCTAGGATCAAGATCCCTGATGTCCC
AGACTTAGAGAAGCTTCGGGCGAGGGAGCAACCCGAGGGCTGGCTCCCAC
CTGCGTTTTTCACGTGGCTGCTATACGGACCGTTGAGCGAAAACCCGGAC
GAGGACATTTCGTTCCAGGAAAGCAACGGCCCGGAAGGTGCTGTGGAGAG
CGACGACAACCCAGAGAGCTTTGGGCCAAGACGGGCAACCAAAGTCGGGA
CAGCAAAACCGCGACCTCATGGACGAGGTCATCAAAGAGCTTTGGACCAC
CAAGAACAAGGACTCCGCCAACAAGGCATACCAGCAGGGGTTGAAGAAAC
GGCAGGAGGCGTTGACTCGTAAGGCCGGAACCAGGGACCCGGAGGAGGTC
GCTAGGATCAAGATCCCTGATGTCCCAGACTTAGAGAAGCTTCGGGCGAG
GGAGCAACCCGAGGGCTGGCTCCCACCTGCGTTTTTCACGTGGCTGCTAT
ACGGACCGTTGAGCGAAAACCCGGACGAGGACATTTCGTTCCAGGAAAGC
AACGGCCCGGAAGGTGCTGTGGAGAGCGACGACAACCCAGAG
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