mRNA_L-elsbetiae_contig5929.14405.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5929.14405.1
Unique NamemRNA_L-elsbetiae_contig5929.14405.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5929.14405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5929contigL-elsbetiae_contig5929:4382..4993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size614
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.329828-CDS-L-elsbetiae_contig5929:4381..48311622816641.329828-CDS-L-elsbetiae_contig5929:4381..4831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5929 4382..4831 +
1691683705.8530266-CDS-L-elsbetiae_contig5929:4381..48311691683705.8530266-CDS-L-elsbetiae_contig5929:4381..4831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5929 4382..4831 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.3398175-UTR-L-elsbetiae_contig5929:4831..49931622816641.3398175-UTR-L-elsbetiae_contig5929:4831..4993Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 4832..4993 +
1691683705.863406-UTR-L-elsbetiae_contig5929:4831..49931691683705.863406-UTR-L-elsbetiae_contig5929:4831..4993Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 4832..4993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5929.14405.1prot_L-elsbetiae_contig5929.14405.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5929 4382..4831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5929.14405.1

>prot_L-elsbetiae_contig5929.14405.1 ID=prot_L-elsbetiae_contig5929.14405.1|Name=mRNA_L-elsbetiae_contig5929.14405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
PLSHAPISVSVCLCPSLSLSLSLCLPIVCLCVPLLHKKLSRNILQKTTAK
QISSVLVSISALARKNATLSSRAPREKPRHTTTERCVKKTKRTPPKTRET
SLSPVCCCMLYVVFALKNLGCFLCSLRQILRLCMEYRLNPIPSLCSSMG*
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mRNA from alignment at L-elsbetiae_contig5929:4382..4993+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5929.14405.1 ID=mRNA_L-elsbetiae_contig5929.14405.1|Name=mRNA_L-elsbetiae_contig5929.14405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig5929:4382..4993+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCTCTCGCATGCCCCTATCTCGGTCTCTGTCTGTCTCTGCCCGTCTCT
CTCTCTGTCTCTCTCTCTGTGCCTGCCCATAGTCTGCCTCTGTGTTCCGC
TCCTTCACAAAAAGCTCTCCCGAAACATCCTCCAGAAGACAACAGCAAAA
CAAATCTCATCCGTGCTTGTATCTATAAGCGCGCTCGCCCGCAAAAATGC
AACGCTCTCTTCCCGCGCTCCACGCGAGAAGCCACGCCACACGACTACCG
AACGCTGCGTGAAAAAGACCAAAAGAACACCGCCAAAAACGCGAGAGACC
TCTCTCTCCCCTGTATGTTGTTGCATGTTGTATGTTGTCTTCGCATTAAA
AAATTTAGGTTGTTTTCTCTGCTCGCTTCGCCAAATATTACGTCTCTGTA
TGGAATACCGTTTGAACCCCATACCGAGTCTTTGCTCTAGTATGGGTTAG
GTTCCATCTTTGATTCTTTGTTTTATTTTAAAAAACCGTTTCGATCTCTC
CATCCAGTACCTTTCAAATGTCCGTACTAATCCAACACTTGATGCGGCCA
ATTCCCGTGGTCACAGGCTAACTTATACCCAAGAAAAGGTACACGAAAAA
TAAAATGGACCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5929:4382..4993+

>mRNA_L-elsbetiae_contig5929.14405.1 ID=mRNA_L-elsbetiae_contig5929.14405.1|Name=mRNA_L-elsbetiae_contig5929.14405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig5929:4382..4993+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCTCTCGCATGCCCCTATCTCGGTCTCTGTCTGTCTCTGCCCGTCTCT
CTCTCTGTCTCTCTCTCTGTGCCTGCCCATAGTCTGCCTCTGTGTTCCGC
TCCTTCACAAAAAGCTCTCCCGAAACATCCTCCAGAAGACAACAGCAAAA
CAAATCTCATCCGTGCTTGTATCTATAAGCGCGCTCGCCCGCAAAAATGC
AACGCTCTCTTCCCGCGCTCCACGCGAGAAGCCACGCCACACGACTACCG
AACGCTGCGTGAAAAAGACCAAAAGAACACCGCCAAAAACGCGAGAGACC
TCTCTCTCCCCTGTATGTTGTTGCATGTTGTATGTTGTCTTCGCATTAAA
AAATTTAGGTTGTTTTCTCTGCTCGCTTCGCCAAATATTACGTCTCTGTA
TGGAATACCGTTTGAACCCCATACCGAGTCTTTGCTCTAGTATGGGTTAG
CCTCTCTCGCATGCCCCTATCTCGGTCTCTGTCTGTCTCTGCCCGTCTCT
CTCTCTGTCTCTCTCTCTGTGCCTGCCCATAGTCTGCCTCTGTGTTCCGC
TCCTTCACAAAAAGCTCTCCCGAAACATCCTCCAGAAGACAACAGCAAAA
CAAATCTCATCCGTGCTTGTATCTATAAGCGCGCTCGCCCGCAAAAATGC
AACGCTCTCTTCCCGCGCTCCACGCGAGAAGCCACGCCACACGACTACCG
AACGCTGCGTGAAAAAGACCAAAAGAACACCGCCAAAAACGCGAGAGACC
TCTCTCTCCCCTGTATGTTGTTGCATGTTGTATGTTGTCTTCGCATTAAA
AAATTTAGGTTGTTTTCTCTGCTCGCTTCGCCAAATATTACGTCTCTGTA
TGGAATACCGTTTGAACCCCATACCGAGTCTTTGCTCTAGTATGGGTTAG
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