mRNA_L-elsbetiae_contig590.14367.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig590.14367.1
Unique NamemRNA_L-elsbetiae_contig590.14367.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig590.14367.1 vs. uniprot
Match: D7FNR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR0_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 4.090e-24
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    4 RREMLVGADRCLGDIVSEMLSTIEDEDDPHEEAHIYLCTLFPQFAHIFSEIKE 162
            RREMLVGADRCLGDIVSEML+TIED D+ HE+AHIYLCTLFPQF+HIFSE+KE
Sbjct:  280 RREMLVGADRCLGDIVSEMLATIEDNDESHEDAHIYLCTLFPQFSHIFSEMKE 332
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BLAST of mRNA_L-elsbetiae_contig590.14367.1 vs. uniprot
Match: A0A6H5L333_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L333_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.130e-23
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   13 MLVGADRCLGDIVSEMLSTIEDEDDPHEEAHIYLCTLFPQFAHIFSEIKE 162
            MLVG DRCLGDIVSEMLSTIED D  HEEAHIYLCTLFPQFAHIFSE+KE
Sbjct:    1 MLVGTDRCLGDIVSEMLSTIEDNDKSHEEAHIYLCTLFPQFAHIFSEMKE 50
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BLAST of mRNA_L-elsbetiae_contig590.14367.1 vs. uniprot
Match: I2CQC4_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQC4_NANGC)

HSP 1 Score: 52.0 bits (123), Expect = 1.330e-7
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 FRREMLVGADRCLGDIVSEMLSTIEDEDDPHEEAHIYLCTLFPQFAHIFSEIKE 162
            FRR+ L+G +RC G++V+EML  +E+ DDP E       TLFP    ++ ++ E
Sbjct:    3 FRRDALMGLERCAGELVTEMLLLVEESDDPEEAEMRLALTLFPLLTDLYRQMLE 56
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BLAST of mRNA_L-elsbetiae_contig590.14367.1 vs. uniprot
Match: A0A485KK40_9STRA (Aste57867_8354 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK40_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.100e-6
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    4 RREMLVGADRCLGDIVSEMLSTIEDEDDPHEEAHIYLCTLFPQFAHIFSEIK 159
            +R+ L+G +RC G++V+EMLS IEDED    E  + +  +FP FA +F ++K
Sbjct:  169 KRDGLLGLERCAGEVVTEMLSIIEDEDSEEGEMRLVM-EVFPSFADLFGQLK 219
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BLAST of mRNA_L-elsbetiae_contig590.14367.1 vs. uniprot
Match: A0A1V9ZCL8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCL8_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.440e-6
Identity = 22/52 (42.31%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    4 RREMLVGADRCLGDIVSEMLSTIEDEDDPHEEAHIYLCTLFPQFAHIFSEIK 159
            +R+ L+G +RC G++V+EML  IEDED    E  + +  +FP FA ++S++K
Sbjct:  182 KRDGLLGLERCAGEVVTEMLQVIEDEDSEEGEMRLVM-EIFPNFADLYSQLK 232
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BLAST of mRNA_L-elsbetiae_contig590.14367.1 vs. uniprot
Match: A0A6A4ZLR0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZLR0_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.790e-6
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 RREMLVGADRCLGDIVSEMLSTIEDEDDPHEEAHIYLCTLFPQFAHIFSEIK 159
            +R+ L+G +RC+G++V+EML  IED+D    E  + +  +FP FA +FS++K
Sbjct:  163 KRDGLLGLERCMGEVVTEMLHIIEDDDGEEGEMRLVM-DVFPSFADLFSQLK 213
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BLAST of mRNA_L-elsbetiae_contig590.14367.1 vs. uniprot
Match: A0A7S2UYJ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYJ0_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 7.010e-6
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    4 RREMLVGADRCLGDIVSEMLSTIEDEDDPHEEAHIYLCTLFPQFAHIFSEI 156
            +R++L G DRCLG+IVS++L  +ED     EEA + L  LFP+F+ +F ++
Sbjct:   83 KRDLLEGTDRCLGEIVSDVLRALEDL--AVEEAQVKLLGLFPEFSSLFQQL 131
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BLAST of mRNA_L-elsbetiae_contig590.14367.1 vs. uniprot
Match: A0A4D9CSC2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSC2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.770e-6
Identity = 21/54 (38.89%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 FRREMLVGADRCLGDIVSEMLSTIEDEDDPHEEAHIYLCTLFPQFAHIFSEIKE 162
            FRR+ L+G +RC G++V+EML  +E+ D+P E       TLFP    ++ ++ E
Sbjct:  241 FRRDALMGLERCAGELVTEMLLLVEESDEPEEAEMRLALTLFPLLTDLYRQMLE 294
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BLAST of mRNA_L-elsbetiae_contig590.14367.1 vs. uniprot
Match: A0A067CQT9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQT9_SAPPC)

HSP 1 Score: 49.7 bits (117), Expect = 1.540e-5
Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    4 RREMLVGADRCLGDIVSEMLSTIEDEDDPHEEAHIYLCTLFPQFAHIFSEIK 159
            +R+ L+G +RC G++V+EML  IED+D    E  + +  +FP FA ++S++K
Sbjct:  173 KRDGLLGLERCAGEVVTEMLEVIEDDDGEEGEMRLVM-EIFPNFADLYSQLK 223
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BLAST of mRNA_L-elsbetiae_contig590.14367.1 vs. uniprot
Match: A0A6G0XFD0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XFD0_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.550e-5
Identity = 22/52 (42.31%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    4 RREMLVGADRCLGDIVSEMLSTIEDEDDPHEEAHIYLCTLFPQFAHIFSEIK 159
            +R+ L+G +RC G++V+EML  IEDED    E  + +  +FP FA +F ++K
Sbjct:  177 KRDGLLGLERCAGEVVTEMLHIIEDEDSEEGEMRLVM-EVFPSFADLFGQLK 227
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig590.14367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FNR0_ECTSI4.090e-2486.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L333_9PHAE1.130e-2390.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I2CQC4_NANGC1.330e-740.74Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A485KK40_9STRA3.100e-644.23Aste57867_8354 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9ZCL8_9STRA4.440e-642.31Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6A4ZLR0_9STRA5.790e-642.31Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A7S2UYJ0_9STRA7.010e-645.10Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9CSC2_9STRA8.770e-638.89Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A067CQT9_SAPPC1.540e-540.38Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6G0XFD0_9STRA1.550e-542.31Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig590contigL-elsbetiae_contig590:1123..1284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue4.4e-18
Seed eggNOG ortholog2880.D7FNR0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs293KV@1,2RAHN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_004580.1
Exons1
Model size162
Cds size150
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816637.7699342-UTR-L-elsbetiae_contig590:1122..11341622816637.7699342-UTR-L-elsbetiae_contig590:1122..1134Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig590 1123..1134 +
1691683703.2045355-UTR-L-elsbetiae_contig590:1122..11341691683703.2045355-UTR-L-elsbetiae_contig590:1122..1134Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig590 1123..1134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816637.781144-CDS-L-elsbetiae_contig590:1134..12841622816637.781144-CDS-L-elsbetiae_contig590:1134..1284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig590 1135..1284 +
1691683703.2196877-CDS-L-elsbetiae_contig590:1134..12841691683703.2196877-CDS-L-elsbetiae_contig590:1134..1284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig590 1135..1284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig590.14367.1prot_L-elsbetiae_contig590.14367.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig590 1135..1284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig590.14367.1

>prot_L-elsbetiae_contig590.14367.1 ID=prot_L-elsbetiae_contig590.14367.1|Name=mRNA_L-elsbetiae_contig590.14367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=50bp
MLVGADRCLGDIVSEMLSTIEDEDDPHEEAHIYLCTLFPQFAHIFSEIKE
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mRNA from alignment at L-elsbetiae_contig590:1123..1284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig590.14367.1 ID=mRNA_L-elsbetiae_contig590.14367.1|Name=mRNA_L-elsbetiae_contig590.14367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=162bp|location=Sequence derived from alignment at L-elsbetiae_contig590:1123..1284+ (Laminarionema elsbetiae ELsaHSoW15)
TTCCGCAGGGAGATGCTAGTCGGGGCGGACCGATGCCTTGGCGACATCGT
GTCCGAGATGCTGTCGACGATCGAGGACGAGGATGACCCCCACGAAGAAG
CCCACATCTACCTCTGCACCCTCTTCCCACAGTTCGCCCACATATTCTCG
GAGATCAAAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig590:1123..1284+

>mRNA_L-elsbetiae_contig590.14367.1 ID=mRNA_L-elsbetiae_contig590.14367.1|Name=mRNA_L-elsbetiae_contig590.14367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig590:1123..1284+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTAGTCGGGGCGGACCGATGCCTTGGCGACATCGTGTCCGAGATGCT
GTCGACGATCGAGGACGAGGATGACCCCCACGAAGAAGCCCACATCTACC
TCTGCACCCTCTTCCCACAGTTCGCCCACATATTCTCGGAGATCAAAGAG
ATGCTAGTCGGGGCGGACCGATGCCTTGGCGACATCGTGTCCGAGATGCT
GTCGACGATCGAGGACGAGGATGACCCCCACGAAGAAGCCCACATCTACC
TCTGCACCCTCTTCCCACAGTTCGCCCACATATTCTCGGAGATCAAAGAG
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