mRNA_L-elsbetiae_contig59.14365.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig59.14365.1 vs. uniprot
Match: D8LNR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR1_ECTSI) HSP 1 Score: 218 bits (556), Expect = 6.040e-67 Identity = 111/149 (74.50%), Postives = 128/149 (85.91%), Query Frame = 1 Query: 37 MDATSFTLPAAWCFLAVKLTFQTTRQCTPKRPKRGKNKGGAV-----QVHQG-AGTSQLVHLPTEVAFKSLIIAALKELHGEMGSLAYPVDVLSWDAANGEGRLRVPARCLVPIRAALSLVGSCGNVPCAIDVTDASPFLAGLACDRYL 465 M+A+S+TLPAA+CF+AV+LTFQ TRQ TPKRPKRGK KGG Q QG A TSQ V+LPT+VAFK+ I+AA+K+LHGE+GSLAYPVDVLSWDA +GEGRLRVPAR LVPIRAALS VGSCG+VPCAIDV + SPFLAGLAC+RYL Sbjct: 1 MEASSYTLPAAFCFIAVQLTFQATRQATPKRPKRGKVKGGGTTQRQQQAPQGSAATSQGVYLPTDVAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSFVGSCGDVPCAIDVREVSPFLAGLACERYL 149
BLAST of mRNA_L-elsbetiae_contig59.14365.1 vs. uniprot
Match: A0A8J6EM83_ELECQ (Uncharacterized protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6EM83_ELECQ) HSP 1 Score: 64.7 bits (156), Expect = 4.120e-9 Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 214 VAFKSLIIAALKELHGEMGSLAYPVDVLSWDAANGEGRLRVPARCLVPIRAALSLVGSCGNVPCAIDVTDASPFLAGLA 450 V KSLI++ALKELHGE+G+ +YP+DVL +D LR+ + LV + +L++VG C+I V SPFL LA Sbjct: 43 VQLKSLILSALKELHGEVGA-SYPLDVLKFDGKTSSAILRIKSSGLVKLWTSLTMVGQYQGQLCSIRVLQTSPFLLALA 120
BLAST of mRNA_L-elsbetiae_contig59.14365.1 vs. uniprot
Match: UPI0003C10CDB (ribonuclease P protein subunit p14 n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0003C10CDB) HSP 1 Score: 63.9 bits (154), Expect = 8.630e-9 Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1 Query: 220 FKSLIIAALKELHGEMGSLAYPVDVLSWDAANGEGRLRVPARCLVPIRAALSLVGSCGNVPCAIDVTDASPFLAGLA 450 FK LIIAALKELHGE G+ A P DVL+++ +RV + LV + +A++L+G N CAI VT SPFL L+ Sbjct: 50 FKQLIIAALKELHGETGA-ALPFDVLTFEEKTTSAIVRVYSSGLVKLWSAITLLGYYQNQKCAIRVTQVSPFLLALS 125
BLAST of mRNA_L-elsbetiae_contig59.14365.1 vs. uniprot
Match: UPI001864E3F3 (ribonuclease P protein subunit p14 n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001864E3F3) HSP 1 Score: 63.2 bits (152), Expect = 2.290e-8 Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1 Query: 220 FKSLIIAALKELHGEMGSLAYPVDVLSWDAANGEGRLRVPARCLVPIRAALSLVGSCGNVPCAIDVTDASPFLAGLA 450 FK LI++ALK+L+GE+G+ A+P DVL ++ LRV LV + +AL+L+GS + PCA+ VT SPFL L+ Sbjct: 66 FKQLIVSALKDLYGEIGA-AFPFDVLKFEENTLTAVLRVYNSGLVKLWSALTLLGSYQSEPCAVRVTQVSPFLLALS 141
BLAST of mRNA_L-elsbetiae_contig59.14365.1 vs. uniprot
Match: A0A4W3J7P9_CALMI (Uncharacterized protein n=5 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3J7P9_CALMI) HSP 1 Score: 61.6 bits (148), Expect = 5.190e-8 Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1 Query: 214 VAFKSLIIAALKELHGEMGSLAYPVDVLSWDAANGEGRLRVPARCLVPIRAALSLVGSCGNVPCAIDVTDASPFLAGLACD 456 V FK LI+AAL++LHGE+G+ A PVDVL+++ LRV R LV + +AL+L+G CA V SPFL L+ D Sbjct: 40 VQFKHLIVAALRDLHGEIGA-ALPVDVLTFEEEILSAILRVQNRGLVKLWSALTLLGCYQGQKCAFRVLQVSPFLLALSGD 119
BLAST of mRNA_L-elsbetiae_contig59.14365.1 vs. uniprot
Match: UPI0004574E47 (ribonuclease P protein subunit p14 isoform X1 n=1 Tax=Callorhinchus milii TaxID=7868 RepID=UPI0004574E47) HSP 1 Score: 61.6 bits (148), Expect = 7.730e-8 Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1 Query: 214 VAFKSLIIAALKELHGEMGSLAYPVDVLSWDAANGEGRLRVPARCLVPIRAALSLVGSCGNVPCAIDVTDASPFLAGLACD 456 V FK LI+AAL++LHGE+G+ A PVDVL+++ LRV R LV + +AL+L+G CA V SPFL L+ D Sbjct: 58 VQFKHLIVAALRDLHGEIGA-ALPVDVLTFEEEILSAILRVQNRGLVKLWSALTLLGCYQGQKCAFRVLQVSPFLLALSGD 137
BLAST of mRNA_L-elsbetiae_contig59.14365.1 vs. uniprot
Match: A0A7D9IBD1_PARCT (Ribonuclease P subunit p14 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IBD1_PARCT) HSP 1 Score: 61.2 bits (147), Expect = 7.760e-8 Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 1 Query: 214 VAFKSLIIAALKELHGEMGSLAYPVDVLSWDAANGEGRLRVPARCLVPIRAALSLVGSCGNVPCAIDVTDASPFLAGLACD 456 V KSLI+ ALK+LHG +G+ A VDVL + +GE LRV + L+ +R++L+++ + PC +V SP+L LA D Sbjct: 36 VKLKSLIVNALKQLHGLVGA-AITVDVLKCEKTSGEIILRVKSSDLIKLRSSLTILNNYNGTPCRCNVKQVSPYLMSLAAD 115
BLAST of mRNA_L-elsbetiae_contig59.14365.1 vs. uniprot
Match: Q07G50_XENTR (Ribonuclease P 14kDa subunit n=3 Tax=Xenopus TaxID=8353 RepID=Q07G50_XENTR) HSP 1 Score: 60.8 bits (146), Expect = 1.080e-7 Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 1 Query: 220 FKSLIIAALKELHGEMGSLAYPVDVLSWDAANGEGRLRVPARCLVPIRAALSLVGSCGNVPCAIDVTDASPFLAGLA 450 FK L+++ALK LHGE+GS + P+D+LS+D LRV +R LV + ++L+L+G N C+I V SPFL LA Sbjct: 52 FKLLVVSALKNLHGEVGS-SLPLDLLSFDEKTLCAVLRVCSRGLVKLWSSLTLLGHYKNHECSIRVIQTSPFLLALA 127
BLAST of mRNA_L-elsbetiae_contig59.14365.1 vs. uniprot
Match: UPI001AACA93D (ribonuclease P protein subunit p14-like isoform X2 n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AACA93D) HSP 1 Score: 58.9 bits (141), Expect = 4.360e-7 Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 1 Query: 208 TEVAFKSLIIAALKELHGEMGSLAYPVDVLSWDAANGEGRLRVPARCLVPIRAALSLVGSCGNVPCAIDVTDASPFLAGLA 450 T +KSLI++A+KELHGE+G+ + P+D+L +D LR+ + V + +L+L+G N C+I V SPFL LA Sbjct: 41 TAAQYKSLIVSAVKELHGEVGA-SCPLDLLKYDDKTLSAILRINSSGFVKLWTSLTLLGHYQNQECSIRVLQVSPFLLALA 120
BLAST of mRNA_L-elsbetiae_contig59.14365.1 vs. uniprot
Match: UPI001C64A4DA (ribonuclease P protein subunit p14 n=1 Tax=Centrocercus urophasianus TaxID=9002 RepID=UPI001C64A4DA) HSP 1 Score: 58.2 bits (139), Expect = 8.660e-7 Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 1 Query: 205 PTEVAFKSLIIAALKELHGEMGSLAYPVDVLSWDAANGEGRLRVPARCLVPIRAALSLVGSCGNVPCAIDVTDASPFLAGLA 450 P K L++AAL+ELHGE+G+ A PVDVL+++ + LRV + LV + +AL+L G N CA V SPFL LA Sbjct: 43 PGAPQLKQLVVAALRELHGEVGA-ALPVDVLAYEEKSLCAVLRVISGGLVKLWSALTLQGFYQNRRCAFRVLQTSPFLLALA 123 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig59.14365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig59.14365.1 >prot_L-elsbetiae_contig59.14365.1 ID=prot_L-elsbetiae_contig59.14365.1|Name=mRNA_L-elsbetiae_contig59.14365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp MDATSFTLPAAWCFLAVKLTFQTTRQCTPKRPKRGKNKGGAVQVHQGAGTback to top mRNA from alignment at L-elsbetiae_contig59:49928..51935- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig59.14365.1 ID=mRNA_L-elsbetiae_contig59.14365.1|Name=mRNA_L-elsbetiae_contig59.14365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2008bp|location=Sequence derived from alignment at L-elsbetiae_contig59:49928..51935- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig59:49928..51935- >mRNA_L-elsbetiae_contig59.14365.1 ID=mRNA_L-elsbetiae_contig59.14365.1|Name=mRNA_L-elsbetiae_contig59.14365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig59:49928..51935- (Laminarionema elsbetiae ELsaHSoW15)back to top |