mRNA_L-elsbetiae_contig5891.14358.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5891.14358.1
Unique NamemRNA_L-elsbetiae_contig5891.14358.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5891.14358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5891contigL-elsbetiae_contig5891:3668..6334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_000980.1
Exons3
Model size515
Cds size513
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5891.14358.1prot_L-elsbetiae_contig5891.14358.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5891 3668..6332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816636.4377637-CDS-L-elsbetiae_contig5891:3667..37541622816636.4377637-CDS-L-elsbetiae_contig5891:3667..3754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5891 3668..3754 +
1691683702.1517558-CDS-L-elsbetiae_contig5891:3667..37541691683702.1517558-CDS-L-elsbetiae_contig5891:3667..3754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5891 3668..3754 +
1622816636.4506426-CDS-L-elsbetiae_contig5891:5444..55531622816636.4506426-CDS-L-elsbetiae_contig5891:5444..5553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5891 5445..5553 +
1691683702.162053-CDS-L-elsbetiae_contig5891:5444..55531691683702.162053-CDS-L-elsbetiae_contig5891:5444..5553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5891 5445..5553 +
1622816636.4638817-CDS-L-elsbetiae_contig5891:6015..63321622816636.4638817-CDS-L-elsbetiae_contig5891:6015..6332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5891 6016..6332 +
1691683702.1769698-CDS-L-elsbetiae_contig5891:6015..63321691683702.1769698-CDS-L-elsbetiae_contig5891:6015..6332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5891 6016..6332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5891.14358.1

>prot_L-elsbetiae_contig5891.14358.1 ID=prot_L-elsbetiae_contig5891.14358.1|Name=mRNA_L-elsbetiae_contig5891.14358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=171bp
GGHYFTETGSSLRGQMSIFPGYVDAQSTDPRWFLGFVASTAEETVVFCVS
VQPPSAGHPSTADWHCDDGAGIFPLTTDDEFNVLCGCISDSSSTTEPEAE
EEAEATTPPAAGGGAMTPPTHDSAASSTYADGAATERPALGATAPPGAGG
GATASPSSDSEIGAQLGTPSP
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mRNA from alignment at L-elsbetiae_contig5891:3668..6334+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5891.14358.1 ID=mRNA_L-elsbetiae_contig5891.14358.1|Name=mRNA_L-elsbetiae_contig5891.14358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2667bp|location=Sequence derived from alignment at L-elsbetiae_contig5891:3668..6334+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGGCACTACTTTACCGAGACGGGCAGCAGTCTCCGCGGGCAGATGTC
CATCTTCCCGGGCTACGTGGACGCCCAGTCGACGGACGTGAGTTTTTAGA
AAGACATGGTTGGGGAACAAGTCACCCCTAAAGAGGGAAAACAAAATCGT
GCGTGTACACTGAGCTACAATAAGCTTTTGATGTAGAAAACAAACGAAAA
AGTCCCAAGAAGGCCACAAGCGTACCCCCCCCCCTATAAACGAGAACAGA
CCTGAGCTTTTAATAAATCACACGGGTTGCAGGGGTCCCCGCGCAATATT
AAATGTTCAACGGAGTCCACACAGGCCGGAATTTTCTCTTCCAGCCGGTA
ACCTTTTTGGTGTCGCTGAGCTAAGCCGAGTCACCACCTTTCAGCACAGT
CAAACTCCTTACACAGGTCGCAGCGTGCTCTAAAATTTGCAAGGGGTCTC
ATATATGTCCTATTGGACGTCCGTAGGTAGTTTGCATGCCTTTGTTTTGT
TCTGAAATCGAGAAATGCTGCGTCTGCACGACTGGAAGAAACCAGTTTGA
TGCTCGTCCTCGGCTTAAATTTTGCCCCTGAGCAGGAATCTTCACGGGGC
TGTCGGCCGTCAAAAGAGTCTACCAAATCGCTCGGTGTTTCGACACCGTG
GGGGCACACACGTAGATATAGAGTAGTTTCAAGGTTGGAGCAATTTTGGA
TCCCAGGCATGACGGCCACATTAGCGAACACCCAAAGTCACCTCTTTTCA
CAAAAGGAAACTAAATCACGCGCCATGAATCTACCCCCAATGAGGTTGGA
TTTTTTCCCCGAAAGTCTCTCCGATCTGAACCTTTATCGCTGTGTCGGCA
GCCGAAAACATACCCCGAAAAGCTTTACGGTGGTACAAGGCTGAAAAGGG
ATATATTCGATAGAACTTTGGAGGAATTTTTGATCTCAACTACAGCCGGA
GCCATTACGAAGTGACTGCCGAGCCCGATGGCTAGGAGGGCCAGCGGGGG
CTCCAACATTCCGGCGCTTGTGAACAAAAATTGCAAAAACGCGCGACACG
GACCCGGGAATGTTGTGTTATGGAGCGTCAGCCGTCTATTATGCGCGTTC
AAGCCGTGAAGAGCATCGTCCCAGGGGGGCCGATGGTTGTAAACAAACTA
ACCCTTCCCCACCGCAGCTCCTGACTATAGCAGTGGTCCAAAATCAGCTC
ACCGTGTAGATAGGTTCTGGTCTTGCTTGTTGGCTTGTTTTCGGTACCAC
CGTAGATGATACAAGATACCACACCCCTTGGACCGAATATTAGAGCTCCA
TTTCCCCGTAACGAAGAGGGTGACAGCACCAAACGAAATATTTTCGGACA
GCCCTCTACTACATCTTTCCCACGCCACCCCTGTTCGGCACTGGCACTAT
TCCTGCTGGGGGGGAATCGAGATTTGAACATCTGTTCACGGGTTGTGGTA
ATTTGTGTCGCCTACCGTATGCTATTTCAACCCATAGTTTTGAGAGTGTT
ATCTGAGCCGAGAGGGACACGTGCGTGCATGAATAAAAGGGGTGGCGGAG
ATGTTTCGGGTGTGATTTGGAACTCAATTTGCTGCTTATTCTGCGCAGCT
GCTCTCGCTCATTTCATTTTTATGTTTTGTATTTGCTGATGTTCGGTGCG
GCATGCTGCACTTAGCCAAACCTTTCGACTCAATTCAAGGCCTATTTTGT
TTCCTTCTGCGCGTGGTCTGTCGCTTTGAACTCGGCTTCACCGAATGTCG
CTTTGAACCCTGCTTCGCCGACAACAGCCCCGCTGGTTCCTGGGGTTCGT
GGCCTCGACTGCAGAGGAGACCGTAGTCTTCTGCGTTTCGGTCCAGCCCC
CCTCTGCAGGGCACCCGTCAACCGCGGATTGGCACTGTAAGTAAAGGGCC
TGCTTCTGAAATTGCTGAGAGATTGGTGCTGCTCAGAGATACCTTGATAT
CGCTGCTGCTCTTGTTGCTGTTCTTTGTTCTGGTGCGGGGTTGGGTGATC
GTACACATCGCTAGCGAACGACGGTTTACTTAATTGCCCTCCTTCCCGCC
AAACGAGCCGAACCTGCCCAGGCAGGCTGAGGCGCGTATCTAACGTTGTT
TTGCCCTGTATTTTTCCGCTGGTTTATACTTTTCTGTACATGCAAAGTCG
TACATACGTGTTTGGACAAACATGCATGGCACCATAAGTCTTAAGAAGCC
TGGTATCTTTCCCCGGCGAGTGTTACGTCGTGCACCTGATGCACAATACT
TCACATGTAAAAAAAAAACACTTCTTTAACGTTAAACTTCACCCCCTTTT
ATCTATCTTCATCGTTGACGCCTTACGTTCCTGCACTGCACAACACAGGC
GATGACGGCGCCGGCATTTTCCCGCTGACCACCGACGACGAGTTCAACGT
CCTCTGCGGCTGCATCTCCGACTCCTCCTCAACCACCGAGCCCGAGGCGG
AGGAGGAGGCGGAGGCAACCACCCCCCCCGCTGCCGGCGGTGGAGCCATG
ACACCCCCGACCCACGACTCGGCCGCCTCATCCACGTACGCCGATGGAGC
AGCCACTGAACGCCCAGCCCTGGGGGCGACCGCTCCGCCCGGCGCTGGGG
GGGGGGCTACAGCCTCCCCTTCATCGGACAGCGAGATTGGTGCTCAATTG
GGGACCCCTTCGCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5891:3668..6334+

>mRNA_L-elsbetiae_contig5891.14358.1 ID=mRNA_L-elsbetiae_contig5891.14358.1|Name=mRNA_L-elsbetiae_contig5891.14358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1026bp|location=Sequence derived from alignment at L-elsbetiae_contig5891:3668..6334+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGGCACTACTTTACCGAGACGGGCAGCAGTCTCCGCGGGCAGATGTC
CATCTTCCCGGGCTACGTGGACGCCCAGTCGACGGACGGGGGGCACTACT
TTACCGAGACGGGCAGCAGTCTCCGCGGGCAGATGTCCATCTTCCCGGGC
TACGTGGACGCCCAGTCGACGGACCCCCGCTGGTTCCTGGGGTTCGTGGC
CTCGACTGCAGAGGAGACCGTAGTCTTCTGCGTTTCGGTCCAGCCCCCCT
CTGCAGGGCACCCGTCAACCGCGGATTGGCACTCCCCGCTGGTTCCTGGG
GTTCGTGGCCTCGACTGCAGAGGAGACCGTAGTCTTCTGCGTTTCGGTCC
AGCCCCCCTCTGCAGGGCACCCGTCAACCGCGGATTGGCACTGCGATGAC
GGCGCCGGCATTTTCCCGCTGACCACCGACGACGAGTTCAACGTCCTCTG
CGGCTGCATCTCCGACTCCTCCTCAACCACCGAGCCCGAGGCGGAGGAGG
AGGCGGAGGCAACCACCCCCCCCGCTGCCGGCGGTGGAGCCATGACACCC
CCGACCCACGACTCGGCCGCCTCATCCACGTACGCCGATGGAGCAGCCAC
TGAACGCCCAGCCCTGGGGGCGACCGCTCCGCCCGGCGCTGGGGGGGGGG
CTACAGCCTCCCCTTCATCGGACAGCGAGATTGGTGCTCAATTGGGGACC
CCTTCGCCGGCGATGACGGCGCCGGCATTTTCCCGCTGACCACCGACGAC
GAGTTCAACGTCCTCTGCGGCTGCATCTCCGACTCCTCCTCAACCACCGA
GCCCGAGGCGGAGGAGGAGGCGGAGGCAACCACCCCCCCCGCTGCCGGCG
GTGGAGCCATGACACCCCCGACCCACGACTCGGCCGCCTCATCCACGTAC
GCCGATGGAGCAGCCACTGAACGCCCAGCCCTGGGGGCGACCGCTCCGCC
CGGCGCTGGGGGGGGGGCTACAGCCTCCCCTTCATCGGACAGCGAGATTG
GTGCTCAATTGGGGACCCCTTCGCCG
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