mRNA_L-elsbetiae_contig5891.14357.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5891.14357.1
Unique NamemRNA_L-elsbetiae_contig5891.14357.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5891.14357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5891contigL-elsbetiae_contig5891:955..3254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size273
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5891.14357.1prot_L-elsbetiae_contig5891.14357.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5891 955..3253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816636.361344-CDS-L-elsbetiae_contig5891:954..10501622816636.361344-CDS-L-elsbetiae_contig5891:954..1050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5891 955..1050 +
1691683702.1139295-CDS-L-elsbetiae_contig5891:954..10501691683702.1139295-CDS-L-elsbetiae_contig5891:954..1050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5891 955..1050 +
1622816636.3719301-CDS-L-elsbetiae_contig5891:2049..21761622816636.3719301-CDS-L-elsbetiae_contig5891:2049..2176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5891 2050..2176 +
1691683702.1316707-CDS-L-elsbetiae_contig5891:2049..21761691683702.1316707-CDS-L-elsbetiae_contig5891:2049..2176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5891 2050..2176 +
1622816636.382514-CDS-L-elsbetiae_contig5891:3206..32531622816636.382514-CDS-L-elsbetiae_contig5891:3206..3253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5891 3207..3253 +
1691683702.1427257-CDS-L-elsbetiae_contig5891:3206..32531691683702.1427257-CDS-L-elsbetiae_contig5891:3206..3253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5891 3207..3253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5891.14357.1

>prot_L-elsbetiae_contig5891.14357.1 ID=prot_L-elsbetiae_contig5891.14357.1|Name=mRNA_L-elsbetiae_contig5891.14357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
YADLGSSFFEYTVGETTHVVSSIPMFNSADSPSVWVAGLVTAVTTSSAVS
IDPRCHSEGDTTVHPHPADVQLWLCDIDNTGTAFTEMTDE
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mRNA from alignment at L-elsbetiae_contig5891:955..3254+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5891.14357.1 ID=mRNA_L-elsbetiae_contig5891.14357.1|Name=mRNA_L-elsbetiae_contig5891.14357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2300bp|location=Sequence derived from alignment at L-elsbetiae_contig5891:955..3254+ (Laminarionema elsbetiae ELsaHSoW15)
TACGCGGACCTCGGTAGCTCGTTCTTCGAGTACACGGTCGGAGAGACGAC
CCACGTCGTCAGCTCCATCCCCATGTTCAACTCTGCAGATTCCCCGGTAA
GCTTCTTTGTGGGCGGATATATATAGAGAAAAGCGAGGGCACGGGTATTT
TTTTGGCTTGCGGTATGACGCGTCTCGATACTGAGGTATTCCATGCTGTC
ATGATGGCGACCGGGCTAGGTTGGTAGCTGCTTTTCCCCGAAGGCTTTTT
TCGAGCGCACCCGAACTGTGTTTGGTGCACCATATACGACGAGGGTGGTC
TAGACTACACCCCGCTCCGCCCAACACACCTCTCCGGTACGTACGCTCGA
AGTAATTTCCGTACGGATGTGACGACATCGTCGAAGTGAGATGCCTGATT
AGTTTTCAACTTTGCGTGAAGTTCAGGTCTGGGGTGGTCTCGTTGCGGCG
GGTGTGCTCTGTTTGTTCTTCGTCCTCTCAGCAATTTAGTCAGCCAAAAT
CAAGACCGGCCGGCATGAGGTTTGTCATCGGGAATCTGGTCTGTCGGTTC
TGCATGTAGCTTTCAGCAAAAACAAGAATCGAAACTTAGGAGAATTAACA
CCTCCACCCCGCCTGTTGCAACATGCTTGTTTGGAGGTAGGTGTCGAAAG
GGCGAGGATGCCTCCTCCGGTAGTGTGAAAAAACAGGCATGCGGAACACC
CTTGAAAAAGGAAATAATTTAGTACCAAACTTGAGCGCGAGAAGACGATC
AACTAGTTTTGTTCACGACCGCGAGGGAAAAAGCCATCTTGGATCCAAGC
AGAGGGAGCAGCGGCCAGACATACAGCACTCAGACCATATCCTACCTCCT
CCGACAAAACATACCACAGCCGCAGCAACCTTTTGGCCAGCTTGAACGAC
ACACAAGGTAAAACCATCCAGAAACACACGTCTCTTTCACAGCCACAACC
CACCGCCTGTCCCCCCCCTCACTCTTTTTCCCCATTGATTTTACTGTTGT
TGTTGACCCCGGCCGGGCTCGGCCTTCTTCTGCCCACCGCGTATGTATAT
GTGCCTGTTGTTGTGGCTGGCCCCGCGCGCCGTGCCTTTTTCCAGTCTGT
TTGGGTCGCAGGACTGGTGACCGCGGTGACTACATCAAGTGCCGTTTCTA
TCGACCCCCGCTGCCACTCCGAGGGGGACACCACCGTCCACCCTCACCCC
GCGGACGTCCAGCTCTGGCTCTGTGAGTTTTCGTTCAGTGCGGCTCTCGC
CTTCGGGAGACGGACGGGGATTGTTGGGGTTTGGTTTCTCGCCTCGATTC
TGATGTTGTTGCATCACAACTAGTAGGCTGGCTGCATGCATGCGCCTATC
TATCTATCGGGGTCATCTGGGTCCATGCACCCTTAGACTCCCTTCGTTCG
CCCTTAGCCCCAATACCTGCGCCCCTAGTCCCAACAGGTGCCTGTGGGTG
GCATTGCTGCATTCGGTGGGTGGTGCGTGTGTATGTATGTGCTGGTGATG
ATATAGCGCTGACGCCAAAGTGGTTCCGCTGTTGTTGGGGTAAGTACTCC
TTTTGAAGCAAAGGGTGATAGGATAATCTCCGACACGATACATGTATATC
CAGAACATGGTGATGACCCGTTTGAAAAGTATATACTTCGAAGTATAAGT
TTTTCTCTGATTGCTCCGTCGTCGCCAGAGACGGTGCTTGCTGATTGGGC
GCTGTTGGTTTTGCTTGGTGCTTCCCTCTCTCACGGGGGCTTCGTCGGTG
CATCGTGTTCCCTCGGTGTGTCTGTTCGTTTCTGGTGTGACAATCGCCTG
CCTGCCTGCCTGCCTCTCTCTCCTCGCTCCAATCAACGGCCGCCTTCACA
GACCTATCCAACTGAGGAGACCACGCGACAAAGAGTTATGTCGATACTCA
CCGGTGCGCGCACGGTATATGCGTCACCTCCCCCTCCCCCTCTCCTCATT
CCCCCCCAGCCCCCTGGGTCCAACCGATCGGAAAAATCGCCATGTGTGTC
TCATTCGGACGTCTGATGTACATATATTTTGTGTGGATGCAACAGAACTT
AGCAAGCAACCGATTGTACACGCTCGCCAACGGATTGTTGTGCACACGTG
ACACACGAAACCCATGAGAGACGAACAATTGCGAAACCCCCCTCGCGGCC
CTCCTTCCCAGAAGGACCATCTGCCCTGCACATGGATAACTTCACACTAC
CCAACCCCCCCCTCCCTCGCACTTTTCACGCACGGGGCGTGCACGTAACA
AGGCGATATCGACAACACCGGCACCGCCTTCACCGAGATGACCGACGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5891:955..3254+

>mRNA_L-elsbetiae_contig5891.14357.1 ID=mRNA_L-elsbetiae_contig5891.14357.1|Name=mRNA_L-elsbetiae_contig5891.14357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig5891:955..3254+ (Laminarionema elsbetiae ELsaHSoW15)
TACGCGGACCTCGGTAGCTCGTTCTTCGAGTACACGGTCGGAGAGACGAC
CCACGTCGTCAGCTCCATCCCCATGTTCAACTCTGCAGATTCCCCGTACG
CGGACCTCGGTAGCTCGTTCTTCGAGTACACGGTCGGAGAGACGACCCAC
GTCGTCAGCTCCATCCCCATGTTCAACTCTGCAGATTCCCCGTCTGTTTG
GGTCGCAGGACTGGTGACCGCGGTGACTACATCAAGTGCCGTTTCTATCG
ACCCCCGCTGCCACTCCGAGGGGGACACCACCGTCCACCCTCACCCCGCG
GACGTCCAGCTCTGGCTCTTCTGTTTGGGTCGCAGGACTGGTGACCGCGG
TGACTACATCAAGTGCCGTTTCTATCGACCCCCGCTGCCACTCCGAGGGG
GACACCACCGTCCACCCTCACCCCGCGGACGTCCAGCTCTGGCTCTGCGA
TATCGACAACACCGGCACCGCCTTCACCGAGATGACCGACGAGGCGATAT
CGACAACACCGGCACCGCCTTCACCGAGATGACCGACGAG
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