mRNA_L-elsbetiae_contig5880.14344.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5880.14344.1
Unique NamemRNA_L-elsbetiae_contig5880.14344.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5880.14344.1 vs. uniprot
Match: A0A0K6SB93_9ALVE (Uncharacterized protein n=3 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0K6SB93_9ALVE)

HSP 1 Score: 92.0 bits (227), Expect = 5.150e-19
Identity = 46/109 (42.20%), Postives = 57/109 (52.29%), Query Frame = 1
Query:   22 TVCCDVKCGQCGGFQCHLLPGGAGSCCIGGVNGILANAYDCSTTKAAPCVIDEGTFSPGLFSETCVDGVPG-ILSKDGSVCCDLSCGQCGGIQCQLLPGGAGSCCIGGV 345
              CC   CGQCGG +C L PGG   CC G +         CS +   PCV+D+      L  +T  + V G + S+ G VCC  +CG+CGG  C   PGG  SCC GGV
Sbjct:  670 NTCCSASCGQCGGAECELRPGGYSECCAGPIQ---TERSFCSLSPP-PCVVDDAAMGGRLSPQTVCERVKGGLFSQWGIVCCPSTCGECGGEGCSSRPGGWSSCCSGGV 774          
BLAST of mRNA_L-elsbetiae_contig5880.14344.1 vs. uniprot
Match: D7FJ60_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ60_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 4.770e-18
Identity = 58/144 (40.28%), Postives = 69/144 (47.92%), Query Frame = 1
Query:    1 GILSGDGTVCCDVKCGQCGGFQCHLLPGGAG----SCCIGGVNGILANAYDCSTTKAAPCVIDEGTFSPGLFSETC--VDGVPGILSKDGSVCCDLSCGQCGGIQCQ---LLPGGA-GSCCIGGVNGILANADDCSKTGTSPCV 402
            GI S +G VCC   CG CGG  C      AG     CC G    I+ +   CS  + APC+ID+   S     +TC   DGV GI S DG VCC   C  CGG  C    L  G A G CC+   + I      CS +G +PCV
Sbjct:   58 GIESANGDVCCPTACGFCGGEACTEAAVNAGLDDGDCCFGD---IIVSGASCSENQMAPCIIDDA--SQESAGDTCSNTDGVEGISSGDGDVCCPSECVLCGGRDCTEAALAAGLADGDCCV---SDITKEGVKCSDSGAAPCV 193          
BLAST of mRNA_L-elsbetiae_contig5880.14344.1 vs. uniprot
Match: H6WBB4_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB4_VAULI)

HSP 1 Score: 87.0 bits (214), Expect = 1.650e-17
Identity = 51/135 (37.78%), Postives = 61/135 (45.19%), Query Frame = 1
Query:    4 ILSGDGTVCCDVKCGQCGGFQCHLLPGGAGSCCIGGVNGILANAYDCSTTKAAPCVIDEGTFSPGL--FSETCVDGVPGILSKDGSVCCDLSCGQCGGIQCQLLPGGAGSCCIGGVNGILANADDCSKTGTSPCV 402
            I    G  CC   CG CGGF C   PGGA  CC G +         CS + A PC+  +    P +   S  C DG   I    G  CC + CG CGG+ C + PGGA SCC G V         C K+   PC+
Sbjct:  178 IPDSSGMKCCPATCGACGGFGCDKRPGGAMMCCTGNIT------KSCSMS-APPCIASDDKPYPPMPPSSGKCPDG--SIPDASGMKCCPMKCGTCGGLGCDMRPGGAASCCTGSVT------KTCDKS-PPPCI 296          
BLAST of mRNA_L-elsbetiae_contig5880.14344.1 vs. uniprot
Match: A0A6H5L879_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L879_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.700e-16
Identity = 53/145 (36.55%), Postives = 67/145 (46.21%), Query Frame = 1
Query:    1 GILSGDGTVCCDVKCGQCGGFQCHLLPGGAG----SCCIGGVNGILANAYDCSTTKAAPCVIDEGTFSPGLFSETC--VDGVPGILSKDGSVCCDLSCGQCGGIQCQLLPGGAG----SCCIGGVNGILANADDCSKTGTSPCVL 405
            GI S +G VCC   CG CGG  C      AG     CC    + I+     CS  + APC+ID+   S      TC   +GV GI S +G VCC   CG CGG  C      AG     CC+   + I      CS +G +PC++
Sbjct:   58 GIESTNGGVCCPALCGLCGGAACTKAAVDAGLDDGDCCF---SDIIRFGASCSENQMAPCIIDDA--SKASAGNTCSNANGVEGISSANGDVCCPSECGLCGGRDCTQAALAAGLDDGDCCV---SDITKEGVKCSDSGAAPCIV 194          
BLAST of mRNA_L-elsbetiae_contig5880.14344.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 8.520e-16
Identity = 54/159 (33.96%), Postives = 68/159 (42.77%), Query Frame = 1
Query:    1 GILSGDGTVCCDVKCGQCGGFQCHLLPG----GAGSCCIGGVNGILANAYDCSTTKAAPCVIDEGTFSPGLF---------------SETCVD-GVPGILSKDGSVCCDLSCGQCGGIQCQLLPG----GAGSCCIGGVNGILANADDCSKTGTSPCVL 405
            GI S +  VCCD++CG CGG  C         G  SCC    + I  +   C+ T  APC ID    S                   S TC   GV GI S +   CCD+ CG CGG+ C         GA  CC    N I+   + C+ TG +PC +
Sbjct:  307 GIESSNKKVCCDLRCGTCGGVGCSKFGEAYGLGESSCCA---STITDDGESCAVTGMAPCFIDSDNESSXXXXXXXXXXXXXXXXXGSATCASHGVVGIESSNQKACCDVRCGACGGVGCSKFGEAYGLGAYECCS---NDIVREGESCAATGMAPCYI 459          
BLAST of mRNA_L-elsbetiae_contig5880.14344.1 vs. uniprot
Match: A0A6H5KWI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI6_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.900e-15
Identity = 54/159 (33.96%), Postives = 67/159 (42.14%), Query Frame = 1
Query:    1 GILSGDGTVCCDVKCGQCGGFQCHLLPG----GAGSCCIGGVNGILANAYDCSTTKAAPCVIDEGT---------------FSPGLFSETCVD-GVPGILSKDGSVCCDLSCGQCGGIQCQLLPG----GAGSCCIGGVNGILANADDCSKTGTSPCVL 405
            GI S +  VCCDV+CG CGG  C         G   CC    + I  +   C+ T  APC ID                     G  S TC   GV GI S +   CCD+ CG CGG+ C         GA  CC    N I+   + C+ TG +PC +
Sbjct:  227 GIESSNKKVCCDVRCGTCGGVGCSKFGEEYGLGESYCCT---STITDDGESCADTGMAPCYIDSDDDXXXXXXXXXXXXXXXXXGEGSTTCASYGVVGIESSNQKACCDVRCGACGGVGCSKFGEAYGLGAYECCS---NDIVKQGESCAATGMAPCYI 379          
BLAST of mRNA_L-elsbetiae_contig5880.14344.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 5.690e-8
Identity = 30/64 (46.88%), Postives = 35/64 (54.69%), Query Frame = 1
Query:  214 CVDGVPGILSKDGSVCCDLSCGQCGGIQCQLLPGGAGSCCIGGVNGILANADDCSKTGTSPCVL 405
            C +GVPG+ S  G VCC  SCG CGG+ C    G A  CC      I+     CS TGT+PC L
Sbjct: 1177 CTNGVPGVESTMGEVCCPASCGHCGGVGCDER-GAADECCT---TEIMDYGQPCSVTGTAPCYL 1236          
BLAST of mRNA_L-elsbetiae_contig5880.14344.1 vs. uniprot
Match: D7FHN7_ECTSI (von Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 4.460e-7
Identity = 28/64 (43.75%), Postives = 34/64 (53.12%), Query Frame = 1
Query:  214 CVDGVPGILSKDGSVCCDLSCGQCGGIQCQLLPGGAGSCCIGGVNGILANADDCSKTGTSPCVL 405
            C +GVPG+ S  G VCC   CGQCGG+ C         CCI     I+     CS+ GT+PC L
Sbjct:  220 CTNGVPGMESAGGEVCCPADCGQCGGVGCGEF---GEDCCI---TEIMDYGQPCSEIGTAPCYL 277          
BLAST of mRNA_L-elsbetiae_contig5880.14344.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 6.440e-7
Identity = 29/64 (45.31%), Postives = 34/64 (53.12%), Query Frame = 1
Query:  214 CVDGVPGILSKDGSVCCDLSCGQCGGIQCQLLPGGAGSCCIGGVNGILANADDCSKTGTSPCVL 405
            C +GV G+ S  G VCC  SCG CGG+ C    G A  CC      I+     CS TGT+PC L
Sbjct:  674 CTNGVAGVESTMGEVCCPASCGHCGGVGCDER-GAADECCT---TEIMDYGQPCSVTGTAPCYL 733          
BLAST of mRNA_L-elsbetiae_contig5880.14344.1 vs. uniprot
Match: D8LTS2_ECTSI (Similar to Gram-negative bacteria-binding protein 1, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS2_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.020e-6
Identity = 32/73 (43.84%), Postives = 41/73 (56.16%), Query Frame = 1
Query:  187 FSPGLFSETCVDGVPGILSKDGSVCCDLSCGQCGGIQCQLLPGGAGSCCIGGVNGILANADDCSKTGTSPCVL 405
            FS       C +GV GI S DG VCC++SCGQCGG  C +   GA SCC    + IL   + C   G +PC++
Sbjct:  192 FSSSTEESVCTNGVSGIES-DG-VCCEISCGQCGGSGCSMRGNGAASCCT---STILEVGEVC---GVAPCII 256          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5880.14344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A0K6SB93_9ALVE5.150e-1942.20Uncharacterized protein n=3 Tax=Chromera velia CCM... [more]
D7FJ60_ECTSI4.770e-1840.28WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
H6WBB4_VAULI1.650e-1737.78Uncharacterized protein n=1 Tax=Vaucheria litorea ... [more]
A0A6H5L879_9PHAE1.700e-1636.55WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDU6_ECTSI8.520e-1633.96N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5KWI6_9PHAE3.900e-1533.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHN6_ECTSI5.690e-846.88Glycin-rich protein n=1 Tax=Ectocarpus siliculosus... [more]
D7FHN7_ECTSI4.460e-743.75von Willebrand A domain containing protein n=2 Tax... [more]
A0A6H5JRK3_9PHAE6.440e-745.31VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LTS2_ECTSI1.020e-643.84Similar to Gram-negative bacteria-binding protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5880contigL-elsbetiae_contig5880:9975..10735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue2.9e-16
Seed eggNOG ortholog2880.D7FQV4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816635.0633838-CDS-L-elsbetiae_contig5880:9974..101811622816635.0633838-CDS-L-elsbetiae_contig5880:9974..10181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5880 9975..10181 +
1691683701.2336717-CDS-L-elsbetiae_contig5880:9974..101811691683701.2336717-CDS-L-elsbetiae_contig5880:9974..10181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5880 9975..10181 +
1622816635.0768738-CDS-L-elsbetiae_contig5880:10534..107351622816635.0768738-CDS-L-elsbetiae_contig5880:10534..10735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5880 10535..10735 +
1691683701.24423-CDS-L-elsbetiae_contig5880:10534..107351691683701.24423-CDS-L-elsbetiae_contig5880:10534..10735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5880 10535..10735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5880.14344.1prot_L-elsbetiae_contig5880.14344.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5880 9975..10735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5880.14344.1

>prot_L-elsbetiae_contig5880.14344.1 ID=prot_L-elsbetiae_contig5880.14344.1|Name=mRNA_L-elsbetiae_contig5880.14344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
GILSGDGTVCCDVKCGQCGGFQCHLLPGGAGSCCIGGVNGILANAYDCST
TKAAPCVIDEGTFSPGLFSETCVDGVPGILSKDGSVCCDLSCGQCGGIQC
QLLPGGAGSCCIGGVNGILANADDCSKTGTSPCVL*
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mRNA from alignment at L-elsbetiae_contig5880:9975..10735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5880.14344.1 ID=mRNA_L-elsbetiae_contig5880.14344.1|Name=mRNA_L-elsbetiae_contig5880.14344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=761bp|location=Sequence derived from alignment at L-elsbetiae_contig5880:9975..10735+ (Laminarionema elsbetiae ELsaHSoW15)
GGCATTCTGTCCGGTGACGGCACCGTGTGCTGCGACGTTAAGTGCGGGCA GTGCGGAGGTTTCCAGTGCCATCTTTTACCCGGGGGTGCAGGCAGCTGCT GCATCGGCGGGGTGAACGGCATCCTCGCTAACGCATACGATTGCTCCACG ACGAAAGCTGCCCCATGCGTCATCGATGAGGGTACGTTTTCTCCAGGCTT ATTTTCTGTAGCACTTCGCTTCGTTGGTGGAAGCACGGCTTTTTACCCCA TCCCCCGCCGCCGGTCACCTGGCTCACCACGACTTTGTGTGTTCCTTTCC AGTGGCTCTGTAATTGCTACTTCATGCACCGGCCGCTCCACGCGACTCGT GCCCTTGTGGGCGACCCTCCCCCGGCACCGGTAGGTGTGGTGACGCCGAA TCCAGCCCCAGGTACGGAATGTGCCATTGCCCGCCTTTCCAGCGTTTTTC CGTCGGATCCATTGCGCCATATAATTATTCTACCGTGGCAATCTACAAAC GAAGACAGAGCTTTCTCAACTTGACACCGTTCTCCCGTATCTGACACTCT TTGATCAGAGGAAACATGCGTCGACGGCGTTCCTGGCATCTTGTCCAAAG ACGGCAGTGTGTGCTGCGACCTTTCGTGCGGGCAGTGCGGAGGTATCCAG TGCCAGCTTTTACCCGGGGGTGCAGGCAGCTGCTGCATTGGCGGAGTGAA CGGCATCCTTGCCAATGCAGACGATTGTTCTAAGACCGGAACTTCACCGT GCGTTCTTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5880:9975..10735+

>mRNA_L-elsbetiae_contig5880.14344.1 ID=mRNA_L-elsbetiae_contig5880.14344.1|Name=mRNA_L-elsbetiae_contig5880.14344.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig5880:9975..10735+ (Laminarionema elsbetiae ELsaHSoW15)
GGCATTCTGTCCGGTGACGGCACCGTGTGCTGCGACGTTAAGTGCGGGCA
GTGCGGAGGTTTCCAGTGCCATCTTTTACCCGGGGGTGCAGGCAGCTGCT
GCATCGGCGGGGTGAACGGCATCCTCGCTAACGCATACGATTGCTCCACG
ACGAAAGCTGCCCCATGCGTCATCGATGAGGGTACGTTTTCTCCAGGCTT
ATTTTCTGGCATTCTGTCCGGTGACGGCACCGTGTGCTGCGACGTTAAGT
GCGGGCAGTGCGGAGGTTTCCAGTGCCATCTTTTACCCGGGGGTGCAGGC
AGCTGCTGCATCGGCGGGGTGAACGGCATCCTCGCTAACGCATACGATTG
CTCCACGACGAAAGCTGCCCCATGCGTCATCGATGAGGGTACGTTTTCTC
CAGGCTTATTTTCTGAAACATGCGTCGACGGCGTTCCTGGCATCTTGTCC
AAAGACGGCAGTGTGTGCTGCGACCTTTCGTGCGGGCAGTGCGGAGGTAT
CCAGTGCCAGCTTTTACCCGGGGGTGCAGGCAGCTGCTGCATTGGCGGAG
TGAACGGCATCCTTGCCAATGCAGACGATTGTTCTAAGACCGGAACTTCA
CCGTGCGTTCTTTAAGAAACATGCGTCGACGGCGTTCCTGGCATCTTGTC
CAAAGACGGCAGTGTGTGCTGCGACCTTTCGTGCGGGCAGTGCGGAGGTA
TCCAGTGCCAGCTTTTACCCGGGGGTGCAGGCAGCTGCTGCATTGGCGGA
GTGAACGGCATCCTTGCCAATGCAGACGATTGTTCTAAGACCGGAACTTC
ACCGTGCGTTCTTTAA
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