mRNA_L-elsbetiae_contig5873.14337.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5873.14337.1
Unique NamemRNA_L-elsbetiae_contig5873.14337.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5873.14337.1 vs. uniprot
Match: D7FR38_ECTSI (AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR38_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 9.740e-33
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:   31 VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFPT 207
            VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLF T
Sbjct:  181 VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFAT 239
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BLAST of mRNA_L-elsbetiae_contig5873.14337.1 vs. uniprot
Match: A0A6H5L2A1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A1_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.400e-31
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:   31 VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFPT 207
            VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLF T
Sbjct:  588 VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFAT 646
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BLAST of mRNA_L-elsbetiae_contig5873.14337.1 vs. uniprot
Match: A0A7S2H0F0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H0F0_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.570e-26
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:   13 PAGTTT-VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFPT 207
            PA T   VIDFGGATY+H+  +SVVNTRQYRAPEVILGL W  PSDLWS GCIIAEL++G+LLF T
Sbjct:   43 PASTKIKVIDFGGATYDHEKKSSVVNTRQYRAPEVILGLGWSTPSDLWSAGCIIAELYMGELLFAT 108
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BLAST of mRNA_L-elsbetiae_contig5873.14337.1 vs. uniprot
Match: A0A7S2XI48_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XI48_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.260e-25
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:   13 PAGTTT-VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFPT 207
            PA T   VIDFGGATY+H+  +SVVNTRQYRAPEVILGL W  PSDLWS GCIIAEL++G+LLF T
Sbjct:   28 PASTQIKVIDFGGATYDHEKKSSVVNTRQYRAPEVILGLGWNMPSDLWSAGCIIAELYMGELLFAT 93
[Close]
BLAST of mRNA_L-elsbetiae_contig5873.14337.1 vs. uniprot
Match: H3G737_PHYRM (Protein kinase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=H3G737_PHYRM)

HSP 1 Score: 103 bits (257), Expect = 9.980e-25
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 LFFRPAGTTTV--IDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFPT 207
            L  RP     V  IDFGGATYE +S +S++NTRQYR+PEVILGL W YPSD+WS GCIIAEL+LG+LLF T
Sbjct:  176 LSLRPPANNAVKLIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSDIWSAGCIIAELYLGELLFAT 246
[Close]
BLAST of mRNA_L-elsbetiae_contig5873.14337.1 vs. uniprot
Match: A0A7S1XW47_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW47_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.090e-24
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:   31 VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFPT 207
            +IDFGGATYEH+ H +V++TRQYRAPEV LGL W YPSD+WSVGCI+AELF G+LLF T
Sbjct:   63 LIDFGGATYEHEYHGNVISTRQYRAPEVTLGLDWSYPSDVWSVGCIVAELFSGELLFST 121
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BLAST of mRNA_L-elsbetiae_contig5873.14337.1 vs. uniprot
Match: A0A2P4Y3X6_9STRA (CMGC/CLK protein kinase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3X6_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.560e-24
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 LFFRPAGTTTV--IDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFPT 207
            L  RP     V  IDFGGATYE +S +S++NTRQYR+PEVILGL W YPSD+WS GCIIAEL+LG+LLF T
Sbjct:  200 LSLRPPANNAVKLIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSDIWSAGCIIAELYLGELLFAT 270
[Close]
BLAST of mRNA_L-elsbetiae_contig5873.14337.1 vs. uniprot
Match: A0A0P1A6K3_PLAHL (Cmgc clk protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6K3_PLAHL)

HSP 1 Score: 103 bits (258), Expect = 3.280e-24
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 LFFRPAGTTTV--IDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFPT 207
            L  RP  +  V  IDFGGATYE +S +S++NTRQYR+PEVILGL W YPSD+WS GCIIAEL+LG+LLF T
Sbjct:  402 LSLRPPASNAVKLIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSDIWSAGCIIAELYLGELLFAT 472
[Close]
BLAST of mRNA_L-elsbetiae_contig5873.14337.1 vs. uniprot
Match: A0A3M6VG08_9STRA (Pyridoxal kinase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VG08_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.620e-24
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 LFFRPAGTTTV--IDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFPT 207
            L  RP  +  V  IDFGGATYE +S +S++NTRQYR+PEVILGL W YPSD+WS GCIIAEL+LG+LLF T
Sbjct:  641 LSLRPPASNAVKLIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSDIWSAGCIIAELYLGELLFAT 711
[Close]
BLAST of mRNA_L-elsbetiae_contig5873.14337.1 vs. uniprot
Match: A0A329S7G9_9STRA (Protein kinase domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A329S7G9_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.200e-24
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 LFFRPAGTTTV--IDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFPT 207
            L  RP     V  IDFGGATYE +S +S++NTRQYR+PEVILGL W YPSD+WS GCIIAEL+LG+LLF T
Sbjct:  366 LSLRPPANNAVKLIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSDIWSAGCIIAELYLGELLFAT 436
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5873.14337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR38_ECTSI9.740e-3398.31AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinas... [more]
A0A6H5L2A1_9PHAE2.400e-3198.31Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S2H0F0_9STRA5.570e-2674.24Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2XI48_9STRA1.260e-2574.24Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
H3G737_PHYRM9.980e-2567.61Protein kinase domain-containing protein n=4 Tax=P... [more]
A0A7S1XW47_9STRA1.090e-2474.58Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2P4Y3X6_9STRA1.560e-2467.61CMGC/CLK protein kinase (Fragment) n=1 Tax=Phytoph... [more]
A0A0P1A6K3_PLAHL3.280e-2467.61Cmgc clk protein kinase n=1 Tax=Plasmopara halsted... [more]
A0A3M6VG08_9STRA3.620e-2467.61Pyridoxal kinase n=1 Tax=Peronospora effusa TaxID=... [more]
A0A329S7G9_9STRA4.200e-2467.61Protein kinase domain-containing protein n=11 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5873contigL-elsbetiae_contig5873:11219..11452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.5e-20
Seed eggNOG ortholog164328.Phyra49306
KEGG koko:K00924,ko:K08287,ko:K08823
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010468,GO:0016301,GO:0016310,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031974,GO:0031981,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045111,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0140096,GO:1901564
EggNOG free text desc.Protein tyrosine kinase
EggNOG OGs3Q7K6@4776,KOG0667@1,KOG0671@2759
EC2.7.12.1
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03041
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816634.1825194-CDS-L-elsbetiae_contig5873:11218..114521622816634.1825194-CDS-L-elsbetiae_contig5873:11218..11452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5873 11219..11452 +
1691683700.5678349-CDS-L-elsbetiae_contig5873:11218..114521691683700.5678349-CDS-L-elsbetiae_contig5873:11218..11452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5873 11219..11452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5873.14337.1prot_L-elsbetiae_contig5873.14337.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5873 11219..11452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5873.14337.1

>prot_L-elsbetiae_contig5873.14337.1 ID=prot_L-elsbetiae_contig5873.14337.1|Name=mRNA_L-elsbetiae_contig5873.14337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
LFFRPAGTTTVIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDL
WSVGCIIAELFLGDLLFPTVRSDFMII*
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mRNA from alignment at L-elsbetiae_contig5873:11219..11452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5873.14337.1 ID=mRNA_L-elsbetiae_contig5873.14337.1|Name=mRNA_L-elsbetiae_contig5873.14337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig5873:11219..11452+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTTTTTTCGTCCGGCTGGAACAACAACAGTGATCGACTTCGGCGGGGC
GACTTACGAGCACGACTCTCACGCGTCCGTGGTGAACACGCGCCAGTACC
GCGCCCCGGAGGTGATCTTGGGGCTGCGCTGGCTTTACCCGTCGGATCTT
TGGTCCGTGGGCTGCATCATCGCCGAGCTCTTCTTGGGGGACCTCCTCTT
CCCGACGGTACGGTCGGATTTCATGATAATATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5873:11219..11452+

>mRNA_L-elsbetiae_contig5873.14337.1 ID=mRNA_L-elsbetiae_contig5873.14337.1|Name=mRNA_L-elsbetiae_contig5873.14337.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig5873:11219..11452+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTTTTTTCGTCCGGCTGGAACAACAACAGTGATCGACTTCGGCGGGGC
GACTTACGAGCACGACTCTCACGCGTCCGTGGTGAACACGCGCCAGTACC
GCGCCCCGGAGGTGATCTTGGGGCTGCGCTGGCTTTACCCGTCGGATCTT
TGGTCCGTGGGCTGCATCATCGCCGAGCTCTTCTTGGGGGACCTCCTCTT
CCCGACGGTACGGTCGGATTTCATGATAATATAATTGTTTTTTCGTCCGG
CTGGAACAACAACAGTGATCGACTTCGGCGGGGCGACTTACGAGCACGAC
TCTCACGCGTCCGTGGTGAACACGCGCCAGTACCGCGCCCCGGAGGTGAT
CTTGGGGCTGCGCTGGCTTTACCCGTCGGATCTTTGGTCCGTGGGCTGCA
TCATCGCCGAGCTCTTCTTGGGGGACCTCCTCTTCCCGACGGTACGGTCG
GATTTCATGATAATATAA
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