mRNA_L-elsbetiae_contig5866.14330.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5866.14330.1
Unique NamemRNA_L-elsbetiae_contig5866.14330.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5866.14330.1 vs. uniprot
Match: A0A6H5K6V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.370e-18
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   82 VLDTLNTPLMDDP-SYAPTPPGGGESATYRWPLEGTEGYYSLMYSGPMPPLQCPNLHP 252
            + DTLNTP  DD   YAP P G GE  T+ +PLEG+EGYYS+MYSGP PPL+C NLHP
Sbjct:  143 IWDTLNTPFFDDSLDYAPIPSGSGEEETFTFPLEGSEGYYSVMYSGPFPPLECSNLHP 200
[Close]
BLAST of mRNA_L-elsbetiae_contig5866.14330.1 vs. uniprot
Match: A0A6H5K384_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K384_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.980e-18
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   82 VLDTLNTPLMDDP-SYAPTPPGGGESATYRWPLEGTEGYYSLMYSGPMPPLQCPNLHP 252
            + DTLNTP  DD   YAP P G GE  T+ +PLEG+EGYYS+MYSGP PPL+C NLHP
Sbjct:   83 IWDTLNTPFFDDSLDYAPIPSGSGEEETFTFPLEGSEGYYSVMYSGPFPPLECSNLHP 140
[Close]
BLAST of mRNA_L-elsbetiae_contig5866.14330.1 vs. uniprot
Match: A0A6H5K566_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K566_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.500e-18
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   82 VLDTLNTPLMDDP-SYAPTPPGGGESATYRWPLEGTEGYYSLMYSGPMPPLQCPNLHP 252
            + DTLNTP  DD   YAP P G GE  T+ +PLEG+EGYYS+MYSGP PPL+C NLHP
Sbjct:  143 IWDTLNTPFFDDSLDYAPIPSGSGEEETFTFPLEGSEGYYSVMYSGPFPPLECSNLHP 200
[Close]
BLAST of mRNA_L-elsbetiae_contig5866.14330.1 vs. uniprot
Match: A0A6H5JNN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.070e-15
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   82 VLDTLNTPLMDDP-SYAPTPPGGGESATYRWPLEGTEGYYSLMYSGPMPPLQC 237
            + DTLNTP  +D   YAP P G GE  T+ +PLEG+EGYYS+MYSGP PPLQC
Sbjct:   17 IWDTLNTPFFEDSLDYAPIPSGSGEEETFTFPLEGSEGYYSVMYSGPFPPLQC 69
[Close]
BLAST of mRNA_L-elsbetiae_contig5866.14330.1 vs. uniprot
Match: A0A6H5KQ76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ76_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.800e-14
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   82 VLDTLNTPLMDD---PS-YAPTPP----GGGESATYRWPLEGTEGYYSLMYSGPMPPLQCPNLHP 252
            + D+LNTP  D+   PS YAP P     G  E  T+ WPLEG EGYYS+MYSGP PPL+CPNL+P
Sbjct:  120 IWDSLNTPFFDEDNPPSDYAPIPTKFNDGIDEGDTFTWPLEGAEGYYSVMYSGPFPPLECPNLYP 184
[Close]
BLAST of mRNA_L-elsbetiae_contig5866.14330.1 vs. uniprot
Match: D7FMV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV1_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 6.310e-14
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   82 VLDTLNTPLMDD---PS-YAPTPP----GGGESATYRWPLEGTEGYYSLMYSGPMPPLQCPNLHP 252
            + D+LNTP  D+   PS YAP P     G  E  T+ WPLEG EGYYS+MYSGP PPL+CPNL P
Sbjct:  150 IWDSLNTPFFDEDDPPSDYAPIPTKYNDGIEEGDTFTWPLEGAEGYYSVMYSGPFPPLECPNLFP 214
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5866.14330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K6V8_9PHAE4.370e-1865.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K384_9PHAE4.980e-1865.52WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K566_9PHAE5.500e-1865.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNN6_9PHAE7.070e-1564.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ76_9PHAE1.800e-1458.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV1_ECTSI6.310e-1458.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5866contigL-elsbetiae_contig5866:1987..3567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.2359636-CDS-L-elsbetiae_contig5866:1986..21521622816633.2359636-CDS-L-elsbetiae_contig5866:1986..2152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5866 1987..2152 -
1691683699.7680767-CDS-L-elsbetiae_contig5866:1986..21521691683699.7680767-CDS-L-elsbetiae_contig5866:1986..2152Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5866 1987..2152 -
1622816633.2475271-CDS-L-elsbetiae_contig5866:3481..35671622816633.2475271-CDS-L-elsbetiae_contig5866:3481..3567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5866 3482..3567 -
1691683699.777959-CDS-L-elsbetiae_contig5866:3481..35671691683699.777959-CDS-L-elsbetiae_contig5866:3481..3567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5866 3482..3567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5866.14330.1prot_L-elsbetiae_contig5866.14330.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5866 1987..3567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5866.14330.1

>prot_L-elsbetiae_contig5866.14330.1 ID=prot_L-elsbetiae_contig5866.14330.1|Name=mRNA_L-elsbetiae_contig5866.14330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
HQRRDRRCAQRDEPVLLGDRIRKRRGAVLDTLNTPLMDDPSYAPTPPGGG
ESATYRWPLEGTEGYYSLMYSGPMPPLQCPNLHP
back to top

mRNA from alignment at L-elsbetiae_contig5866:1987..3567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5866.14330.1 ID=mRNA_L-elsbetiae_contig5866.14330.1|Name=mRNA_L-elsbetiae_contig5866.14330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1581bp|location=Sequence derived from alignment at L-elsbetiae_contig5866:1987..3567- (Laminarionema elsbetiae ELsaHSoW15)
CACCAACGGCGAGACCGACGGTGTGCCCAACGAGATGAACCAGTTCTTCT
GGGAGATCGAATACGGAAGAGACGAGGTGCGGTTTTGTTTTATATTGTTT
TCTTCTTCTTCACAATTATTTTCAGTGCTCGATGGGTTCCTCCTTGTCAC
GAGGAGGGCATCTTGCCAGAGTACCGAGCCGTGGTCACACAGAAAGGTTC
CTTTCCCGAGGACCCCACTACCCCCTTCTGCGGTGCTTGCCTGAGATTGT
GTCACGAGAAGGGTCTAGCCTACCCTTTCCTAGGTGCGTGCGCCAAAGTA
TACTGCGGTGGTTGCCTGAGATTTTGTCGCGAGAAGGATCTAGCCTACCC
TTTCCTAGGTGCGTGCGCCAAAGTATATTGACAGACCAGGATCATCCGCG
CGAAGCAGTTCCTCGACACAAGCAGCCGTTTCTGTATTTGAGCGAGGTCA
CAGATATGCTACAGAACTGCGACTGAACGAGGGGAAAATCCCATGCCTCA
AAAAGAAAGGCAGCAGTTGGTATTATTGCGCTCACTTCGAAGAATCATGT
GTCGGCGTTGCAGCTATGTGTGGTAGCTGGAAACATTCACCATTTGTTAT
CTTCATTCCCCAACTAGCAACGTTATCCGGAGGAGCGCTTTGTAGCGGTG
CGATGCCCCGCCGCCCGCGGTTCCAGTTCCTAGGATGGGGCCCATAGAAG
ACTGCAAGATGCTCTCCGGCTGCTGTCACTGCTGCTATCTCTTCGTACCG
GCGCGTATCGAGTAGATGAGCGCGGCAGGCGCGGCGATTTGTTGTTTCTC
AAGGATATATGGCCGAATCCGATGCTGCCTTTCCTTCCGGGCTTCACGCT
CTCGATTCAGCTCTGCCAGCGCCCTTAACCGGGGACGAGGTCGTGAAACC
GTGGCGCGTTTCGCCTCGAGATTTTGAGATTCATTTCGCCATCTTCGATT
TCATCTTCAATTCCATCTTCAATTTCATCTTCAATTTCATCTTCGATTTC
ATCTTCGATTTCACCACCCAATAAATACATACGCCTGACTGCAAGATGTA
GGGGCCCAACACGCCACCCGCCTCGAAAGGCTACGCCCACTCACTGACCA
CCTGCTCTCTGTCTCCCTCTTTGTAATTGCCGCCGCCGCTGCTGCTGCTG
CTGCTTTGCCCTGCATCTACCCCGGTGTTTTTCCCGAACCGATTCCAGTA
CCACATCTGGTGAGAGGTGATCGATGCAGACTGCGCAAATCTGACAGATG
TACATACAAGGCACGGCTGTATCATGTTTCATACTGGCGTGAAGACCCCC
TACATTCTCCTCGCGATCTGACAAGCACACGATTTGATTCATCTCTTTGC
CTGTCACAAAATGTCTGAACTGCATCATCTTTGCCGCTCTCTCCTGTGTC
TCCCTCGCTCTCCAGGGACACCCTGAACACCCCGCTCATGGACGATCCCA
GCTACGCCCCTACCCCCCCGGGAGGCGGCGAGTCCGCCACCTACCGCTGG
CCCCTGGAAGGCACCGAGGGGTACTACTCTCTCATGTACAGCGGTCCGAT
GCCTCCCCTACAATGCCCCAATCTGCACCCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5866:1987..3567-

>mRNA_L-elsbetiae_contig5866.14330.1 ID=mRNA_L-elsbetiae_contig5866.14330.1|Name=mRNA_L-elsbetiae_contig5866.14330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig5866:1987..3567- (Laminarionema elsbetiae ELsaHSoW15)
CACCAACGGCGAGACCGACGGTGTGCCCAACGAGATGAACCAGTTCTTCT
GGGAGATCGAATACGGAAGAGACGAGGTGCGGTTTTCACCAACGGCGAGA
CCGACGGTGTGCCCAACGAGATGAACCAGTTCTTCTGGGAGATCGAATAC
GGAAGAGACGAGGTGCGGTTTTGGACACCCTGAACACCCCGCTCATGGAC
GATCCCAGCTACGCCCCTACCCCCCCGGGAGGCGGCGAGTCCGCCACCTA
CCGCTGGCCCCTGGAAGGCACCGAGGGGTACTACTCTCTCATGTACAGCG
GTCCGATGCCTCCCCTACAATGCCCCAATCTGCACCCCGGACACCCTGAA
CACCCCGCTCATGGACGATCCCAGCTACGCCCCTACCCCCCCGGGAGGCG
GCGAGTCCGCCACCTACCGCTGGCCCCTGGAAGGCACCGAGGGGTACTAC
TCTCTCATGTACAGCGGTCCGATGCCTCCCCTACAATGCCCCAATCTGCA
CCCC
back to top