mRNA_L-elsbetiae_contig586.14325.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig586.14325.1
Unique NamemRNA_L-elsbetiae_contig586.14325.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig586.14325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig586contigL-elsbetiae_contig586:32906..33293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size388
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig586.14325.1prot_L-elsbetiae_contig586.14325.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig586 32957..33265 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.588118-UTR-L-elsbetiae_contig586:32905..329561622816632.588118-UTR-L-elsbetiae_contig586:32905..32956Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig586 32906..32956 +
1691683699.3133855-UTR-L-elsbetiae_contig586:32905..329561691683699.3133855-UTR-L-elsbetiae_contig586:32905..32956Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig586 32906..32956 +
1622816632.6153262-UTR-L-elsbetiae_contig586:33265..332931622816632.6153262-UTR-L-elsbetiae_contig586:33265..33293Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig586 33266..33293 +
1691683699.338079-UTR-L-elsbetiae_contig586:33265..332931691683699.338079-UTR-L-elsbetiae_contig586:33265..33293Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig586 33266..33293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.6015844-CDS-L-elsbetiae_contig586:32956..332651622816632.6015844-CDS-L-elsbetiae_contig586:32956..33265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 32957..33265 +
1691683699.3250248-CDS-L-elsbetiae_contig586:32956..332651691683699.3250248-CDS-L-elsbetiae_contig586:32956..33265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 32957..33265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig586.14325.1

>prot_L-elsbetiae_contig586.14325.1 ID=prot_L-elsbetiae_contig586.14325.1|Name=mRNA_L-elsbetiae_contig586.14325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MPPRGFDRVIMLSDRKSVGGGAWTEAGGFDRDDYGTPHVYRWCSFEDMRC
WCFKAPLKPIHKENTRLTIRFTGAAVAPIGDAGTSLLLLFANTRNTMYAA
ER*
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mRNA from alignment at L-elsbetiae_contig586:32906..33293+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig586.14325.1 ID=mRNA_L-elsbetiae_contig586.14325.1|Name=mRNA_L-elsbetiae_contig586.14325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=388bp|location=Sequence derived from alignment at L-elsbetiae_contig586:32906..33293+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTAAATGGAAAAGAAGGGGGGATCTTTGTTGTTGTTGTTGGAAAAAA
CATGCCCCCCCGGGGCTTCGACAGAGTAATCATGCTTTCAGACCGAAAAA
GTGTGGGGGGGGGAGCTTGGACAGAAGCGGGGGGCTTCGACAGAGACGAT
TACGGTACTCCACATGTCTACAGGTGGTGCAGCTTCGAAGACATGCGTTG
TTGGTGCTTCAAGGCGCCGCTCAAGCCGATACATAAGGAAAATACGCGCC
TGACAATAAGGTTCACCGGTGCGGCTGTCGCGCCGATCGGGGACGCAGGC
ACCTCGCTTCTTCTCCTCTTCGCCAACACGAGGAATACAATGTATGCTGC
GGAACGCTAACAAGCAACCACGGCACAACTGCTGTTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig586:32906..33293+

>mRNA_L-elsbetiae_contig586.14325.1 ID=mRNA_L-elsbetiae_contig586.14325.1|Name=mRNA_L-elsbetiae_contig586.14325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig586:32906..33293+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCCCCGGGGCTTCGACAGAGTAATCATGCTTTCAGACCGAAAAAG
TGTGGGGGGGGGAGCTTGGACAGAAGCGGGGGGCTTCGACAGAGACGATT
ACGGTACTCCACATGTCTACAGGTGGTGCAGCTTCGAAGACATGCGTTGT
TGGTGCTTCAAGGCGCCGCTCAAGCCGATACATAAGGAAAATACGCGCCT
GACAATAAGGTTCACCGGTGCGGCTGTCGCGCCGATCGGGGACGCAGGCA
CCTCGCTTCTTCTCCTCTTCGCCAACACGAGGAATACAATGTATGCTGCG
GAACGCTAAATGCCCCCCCGGGGCTTCGACAGAGTAATCATGCTTTCAGA
CCGAAAAAGTGTGGGGGGGGGAGCTTGGACAGAAGCGGGGGGCTTCGACA
GAGACGATTACGGTACTCCACATGTCTACAGGTGGTGCAGCTTCGAAGAC
ATGCGTTGTTGGTGCTTCAAGGCGCCGCTCAAGCCGATACATAAGGAAAA
TACGCGCCTGACAATAAGGTTCACCGGTGCGGCTGTCGCGCCGATCGGGG
ACGCAGGCACCTCGCTTCTTCTCCTCTTCGCCAACACGAGGAATACAATG
TATGCTGCGGAACGCTAA
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