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Homology
BLAST of mRNA_L-elsbetiae_contig5859.14319.1 vs. uniprot
Match: D8LDA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA8_ECTSI) HSP 1 Score: 196 bits (498), Expect = 2.050e-54 Identity = 159/417 (38.13%), Postives = 201/417 (48.20%), Query Frame = 1
Query: 4 QLENTVCRVVYVPGPLDPVMPPVRISRTPN------------------------HGGXXXXXXXXGVRQGLLQLTPTSKNLHRRNLRLAPGLSMAGFTDEPDLRVDSSSXXXXXGRDTGSKAGWVDGEDKFVDDQTLSALRSLCRSGGSGIRSSGRGLATLKESVILMTRLGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTAGRLRHLWAQQAEVRAATTRDSDNXXXXXXXXXXXXXXDGGGGVLLHVCAGPGAFLAVHEALAAGAEDVIDXXXXXXXXXXXSVGIGCKIGG-CTVAALGSLREHGAFCVAELAMPSRGDP-------------LSGWSVAGVRFGKLDGRDGERDDAKMRLARAAAGNFVINYD 1140
QLENTVCRV+YVPGPLDPV+P +R+ RT N G G ++ +LQLTPTSKN+ RRNLRLAPGLS AGF+++P+ G G+ G D +DQT +AL+SL RSGG + +G+ ESVIL+TRLGG XXXXXXXXXXXXXX TA RLR LW + A A +S GGGG+LLH CAGPG LAV EAL G + + G+GC++GG TVAALGSLR+HGA+CV EL MP+ P GWSVA V FG+++ DG+ + + +LA A G+FV+N++
Sbjct: 123 QLENTVCRVIYVPGPLDPVIPSIRLPRTRNTAAVPTTASRPPPVAAATPGADAGRGAEGRGGQRDGGKERVLQLTPTSKNVLRRNLRLAPGLSAAGFSEDPNQ---------CPGNTVGAGEGGGGAGDDTPEDQTFAALKSLSRSGGK--KGAGKAAPVPPESVILLTRLGGPRRPGXXXXXXXXXXXXXXTPPTSNSNSNQDTLNVAKRAAGPTEVEDQEA-----------------ATAARLRLLWTEPA---MAVGPESG---------PRGLEDGGGGGLLLHACAGPGTLLAVREALEEGGAEPVGGGGAGGDGDCAR-GVGCRVGGGTTVAALGSLRQHGAYCVVELDMPATVPPGPRSGNGSGGVGAKEGWSVASVAFGRVEAADGDPEAEREKLAHRATGSFVLNFE 498
BLAST of mRNA_L-elsbetiae_contig5859.14319.1 vs. uniprot
Match: A0A6H5KN29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN29_9PHAE) HSP 1 Score: 156 bits (394), Expect = 1.440e-40 Identity = 127/350 (36.29%), Postives = 166/350 (47.43%), Query Frame = 1
Query: 133 RQGLLQLTPTSKNLHRRNLRLAPGLSMAGFTDEPDLRVDSSSXXXXXGRDTGSKAGWVDGEDKFVDDQTLSALRSLCRSGGSGIRSSGRGLATLKESVILMTRLGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTAGRLRHLWAQQAEVRAATTRDSDNXXXXXXXXXXXXXXDGGGGVLLHVCAGPGAFLAVHEALAAGAEDVIDXXXXXXXXXXXSVGIGCKIGG-CTVAALGSLREHGAFCVAELAMPSRGDP-------------LSGWSVAGVRFGKLDGRDGERDDAKMRLARAAAGNFVINYD 1140
++ +LQLTPTSKN+ RRNLRLAPGLS AGF+++P+ G G+ G G+D +DQT +AL+SL RSGG + +G+ ESVIL+TRLGG TA RLR LW +QA V + XXXXXXXX +LLH CAGPG FLAV EAL G + + G+GC++GG TVAALGSLR+HGA+CV EL MP+ P GWSVA V FG+++ DG+ + + +LAR A G+FV+N++
Sbjct: 49 KERVLQLTPTSKNVLRRNLRLAPGLSAAGFSEDPNQ---------WPGNTVGAGEGGGAGDDT-PEDQTFAALKSLSRSGGK--KGAGKAAPVPPESVILLTRLGGPQRPGAGAGGAGANVSSADTPPVSNSNNDQDTLNVAEGAAGPTALEDQAA-----------------ATAARLRLLWTEQAMVVGPESGPRGLEEGXXXXXXXX--------LLLHACAGPGTFLAVREALEEGGAEPVGGGGAGGDGDC--AGVGCRVGGGATVAALGSLRQHGAYCVVELDMPTPVPPGPRSGNESGGVGAKEGWSVASVAFGRVEAADGDPEAEREKLARRATGSFVLNFE 359
BLAST of mRNA_L-elsbetiae_contig5859.14319.1 vs. uniprot
Match: A0A835YTR0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTR0_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.980e-8 Identity = 38/83 (45.78%), Postives = 45/83 (54.22%), Query Frame = 1
Query: 1 AQLENTVCRVVYVPGPLDPVMPPVRISRTPNHGGXXXXXXXXGVRQGLLQLTPTSKNLHRRNLRLAPGLSMAGFTDEPDLRVD 249
AQLEN VCR VYVPGP DPVMP R G QLT TS+N++ + LRL PGL +AG+T+ P D
Sbjct: 85 AQLENIVCRAVYVPGPNDPVMPAFT------------------GRYGTPQLTGTSQNINSKVLRLLPGLCIAGYTEAPGQDAD 149
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-25_001910.1 |
| Exons | 4 |
| Model size | 1143 |
| Cds size | 1143 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816632.2630262-CDS-L-elsbetiae_contig5859:442..621 | 1622816632.2630262-CDS-L-elsbetiae_contig5859:442..621 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5859 443..621 + |
| 1691683699.0776112-CDS-L-elsbetiae_contig5859:442..621 | 1691683699.0776112-CDS-L-elsbetiae_contig5859:442..621 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5859 443..621 + |
| 1622816632.2778153-CDS-L-elsbetiae_contig5859:1637..1867 | 1622816632.2778153-CDS-L-elsbetiae_contig5859:1637..1867 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5859 1638..1867 + |
| 1691683699.086804-CDS-L-elsbetiae_contig5859:1637..1867 | 1691683699.086804-CDS-L-elsbetiae_contig5859:1637..1867 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5859 1638..1867 + |
| 1622816632.2908933-CDS-L-elsbetiae_contig5859:1921..2371 | 1622816632.2908933-CDS-L-elsbetiae_contig5859:1921..2371 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5859 1922..2371 + |
| 1691683699.095913-CDS-L-elsbetiae_contig5859:1921..2371 | 1691683699.095913-CDS-L-elsbetiae_contig5859:1921..2371 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5859 1922..2371 + |
| 1622816632.3036625-CDS-L-elsbetiae_contig5859:2548..2832 | 1622816632.3036625-CDS-L-elsbetiae_contig5859:2548..2832 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5859 2549..2832 + |
| 1691683699.1061268-CDS-L-elsbetiae_contig5859:2548..2832 | 1691683699.1061268-CDS-L-elsbetiae_contig5859:2548..2832 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5859 2549..2832 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5859.14319.1 >prot_L-elsbetiae_contig5859.14319.1 ID=prot_L-elsbetiae_contig5859.14319.1|Name=mRNA_L-elsbetiae_contig5859.14319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=381bp
AQLENTVCRVVYVPGPLDPVMPPVRISRTPNHGGAAAPPPPPGVRQGLLQ
LTPTSKNLHRRNLRLAPGLSMAGFTDEPDLRVDSSSSGGGGGRDTGSKAG
WVDGEDKFVDDQTLSALRSLCRSGGSGIRSSGRGLATLKESVILMTRLGG
ARRQRRRRRRPSACENSTGADSSSSSTATTAAEAAADRLSAAESSPSTTT
TSAAARGDEAAAAAAAAVTAGRLRHLWAQQAEVRAATTRDSDNGDGPGEG
KGWGRGSDGGGGVLLHVCAGPGAFLAVHEALAAGAEDVIDDDESSSSSSS
SSVGIGCKIGGCTVAALGSLREHGAFCVAELAMPSRGDPLSGWSVAGVRF
GKLDGRDGERDDAKMRLARAAAGNFVINYD* back to topmRNA from alignment at L-elsbetiae_contig5859:443..2832+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5859.14319.1 ID=mRNA_L-elsbetiae_contig5859.14319.1|Name=mRNA_L-elsbetiae_contig5859.14319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2390bp|location=Sequence derived from alignment at L-elsbetiae_contig5859:443..2832+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCAGCTCGAGAACACCGTGTGCCGCGTGGTCTACGTCCCGGGGCCCCT
AGACCCCGTGATGCCGCCGGTGCGCATTTCACGGACGCCAAATCATGGGG
GCGCAGCAGCACCACCACCACCACCAGGGGTGAGACAGGGGCTCCTGCAG
CTCACGCCGACATCCAAGAATTTGCATCGGTGAGAATTTGGGTCTGGTTT
GTTAACACTCCGAGTGTAAACATATGTATACCTGTTCATGTACATGTATA
GGAATATATGTAGGAAATTCAACTTGCTTCTGTTGTCTGTGCGCGATTTT
TTTTTAGGCTTCTCTATTTAGACACACAGCTTTCTCAAGAGATGATGCAC
GCACGCGCCCGCCTTTGTGGGGCGTGAGTGTGTGTGTGGCACACGCGCGA
CAAGCTGCTGATCCGCTCCGTGTTCATCGCGTTCTTCAGGCCTGTTCTTG
CTCTCGCCTTCCCGCGGCACAGCGTTGTGGAGCAAAGTACGTCGCGCTGA
AATCACCATCGGCTTTTATTTTTTGTGCGCCAAAGCTCTGAAGGACACAC
AAGATGTTACGAAAAGGCCGTCTCTCACTTCACTGCTGTGTTTCACCTGC
TCACATGCCCGATAGTTAATTAATACTTCGACCTCATTGTTGACGAGGGT
GGGGAGTGCTGAACCCTGCCTGCTCGCGATAAAAACATAAAAACATCACA
GGCAGGCACTGCAGGAGGGGGTCCAACCCCCCCTCCTGTGTGTCCCCGGT
TGGATCGTCTAGCTAGTCGTAGTGGAGGAAGGGGGCCGGTGGGGCAGACG
ACGAATAAGCCAATAATGGGAGGGGAAGAAAAAAAAATGCCCGTGCGCGG
ATGGTTGTTCCACGTGGCAGTGGCGTAGCCCCCGTGAGAAGTTGGCAGTG
GCAGTAACAGACAGACGTTCTTGTGAGTATTATTGGAGAGAGACGACAAA
ACGTCACGAAGGCTTCGTGCTCGAATCTGATAACGCAGCTTGCCATTTGG
GCGACCCGAACACGCCTCCTTCTCTTCTCTCCTCGCATACTTGAAACACC
GAACACACACCCTTTCCCTTCTCTTCTGCTCGCGTTCTTTTGAGACGCAC
TATCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCTGAATCGGGTGCTTTGC
TCGCTCGCTTGCCCAACCCTCCATCTACTCTCTTGCCGTGTGCAGGCGAA
ACTTGCGCCTAGCCCCTGGGCTGTCCATGGCAGGCTTCACCGACGAGCCG
GACCTACGCGTTGACAGCAGCAGCAGCGGCGGCGGCGGTGGCAGGGACAC
GGGTAGTAAGGCTGGGTGGGTCGACGGAGAGGACAAGTTCGTCGACGATC
AGACGCTCTCCGCCCTGCGCTCCCTCTGCCGAAGTGGTGGCAGCGGGATT
CGCAGCAGCGGCAGGGGCCTTGCGAGTAATTCGCCCTCCGGAGCTGCAGA
GGGGGGCAGCTCGAGGAAGGCGGCGCTAGCGCTAAAGGAGTCGGTCATCT
TGATGACTAGGCTGGGCGGCGCGCGGCGGCAGCGGCGGCGGCGGCGGCGG
CCGTCAGCCTGCGAAAATAGTACCGGTGCTGATAGCAGCAGTAGCAGCAC
GGCCACCACCGCAGCGGAAGCAGCAGCGGACAGGCTGAGCGCAGCCGAGA
GCTCGCCGTCGACGACGACGACATCGGCGGCGGCAAGAGGTGACGAGGCA
GCCGCGGCGGCGGCAGCGGCTGTGACGGCGGGCCGGCTGCGGCACCTGTG
GGCGCAACAAGCGGAGGTTAGGGCGGCTACGACGAGAGACAGCGACAACG
GCGACGGTCCGGGAGAAGGGAAGGGGTGGGGGCGGGGGTCGGACGGCGGG
GGAGGGGTGCTTCTCCACGTGTGCGCCGGGCCGGGAGCGTTCCTAGCAGT
CCACGAGGCTCTCGCGGCGGGGGCAGAGGGTCATCAACAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGGAGGAT
CATACCCGCCCTTTGGCTTCGCCGACACCGCAAGGAGGAGAAGACACAGA
AGAAGAGGGACTTGCTGCCGGTGAGCGCGGCGCCGCCGCCGACGGCGGCA
GGGCAGACGTCATCGACGACGACGAAAGCAGCAGCAGCAGCAGCAGCAGC
AGCGTGGGGATAGGGTGCAAGATCGGCGGGTGCACGGTGGCGGCGCTCGG
GAGCCTGAGAGAGCACGGGGCTTTCTGCGTGGCGGAGCTGGCGATGCCGA
GCAGAGGAGACCCGCTTAGCGGCTGGTCGGTTGCGGGGGTCCGGTTTGGT
AAGCTGGACGGGCGTGACGGCGAGCGAGACGACGCGAAAATGAGGCTGGC
GCGTGCCGCGGCGGGGAACTTTGTTATCAACTACGACTGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5859:443..2832+ >mRNA_L-elsbetiae_contig5859.14319.1 ID=mRNA_L-elsbetiae_contig5859.14319.1|Name=mRNA_L-elsbetiae_contig5859.14319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2286bp|location=Sequence derived from alignment at L-elsbetiae_contig5859:443..2832+ (Laminarionema elsbetiae ELsaHSoW15)
GCCCAGCTCGAGAACACCGTGTGCCGCGTGGTCTACGTCCCGGGGCCCCT
AGACCCCGTGATGCCGCCGGTGCGCATTTCACGGACGCCAAATCATGGGG
GCGCAGCAGCACCACCACCACCACCAGGGGTGAGACAGGGGCTCCTGCAG
CTCACGCCGACATCCAAGAATTTGCATCGGCCCAGCTCGAGAACACCGTG
TGCCGCGTGGTCTACGTCCCGGGGCCCCTAGACCCCGTGATGCCGCCGGT
GCGCATTTCACGGACGCCAAATCATGGGGGCGCAGCAGCACCACCACCAC
CACCAGGGGTGAGACAGGGGCTCCTGCAGCTCACGCCGACATCCAAGAAT
TTGCATCGGCGAAACTTGCGCCTAGCCCCTGGGCTGTCCATGGCAGGCTT
CACCGACGAGCCGGACCTACGCGTTGACAGCAGCAGCAGCGGCGGCGGCG
GTGGCAGGGACACGGGTAGTAAGGCTGGGTGGGTCGACGGAGAGGACAAG
TTCGTCGACGATCAGACGCTCTCCGCCCTGCGCTCCCTCTGCCGAAGTGG
TGGCAGCGGGATTCGCAGCAGCGGCAGGGGCCTTGCGAGCGAAACTTGCG
CCTAGCCCCTGGGCTGTCCATGGCAGGCTTCACCGACGAGCCGGACCTAC
GCGTTGACAGCAGCAGCAGCGGCGGCGGCGGTGGCAGGGACACGGGTAGT
AAGGCTGGGTGGGTCGACGGAGAGGACAAGTTCGTCGACGATCAGACGCT
CTCCGCCCTGCGCTCCCTCTGCCGAAGTGGTGGCAGCGGGATTCGCAGCA
GCGGCAGGGGCCTTGCGACGCTAAAGGAGTCGGTCATCTTGATGACTAGG
CTGGGCGGCGCGCGGCGGCAGCGGCGGCGGCGGCGGCGGCCGTCAGCCTG
CGAAAATAGTACCGGTGCTGATAGCAGCAGTAGCAGCACGGCCACCACCG
CAGCGGAAGCAGCAGCGGACAGGCTGAGCGCAGCCGAGAGCTCGCCGTCG
ACGACGACGACATCGGCGGCGGCAAGAGGTGACGAGGCAGCCGCGGCGGC
GGCAGCGGCTGTGACGGCGGGCCGGCTGCGGCACCTGTGGGCGCAACAAG
CGGAGGTTAGGGCGGCTACGACGAGAGACAGCGACAACGGCGACGGTCCG
GGAGAAGGGAAGGGGTGGGGGCGGGGGTCGGACGGCGGGGGAGGGGTGCT
TCTCCACGTGTGCGCCGGGCCGGGAGCGTTCCTAGCAGTCCACGAGGCTC
TCGCGGCGGGGGCAGAGGCGCTAAAGGAGTCGGTCATCTTGATGACTAGG
CTGGGCGGCGCGCGGCGGCAGCGGCGGCGGCGGCGGCGGCCGTCAGCCTG
CGAAAATAGTACCGGTGCTGATAGCAGCAGTAGCAGCACGGCCACCACCG
CAGCGGAAGCAGCAGCGGACAGGCTGAGCGCAGCCGAGAGCTCGCCGTCG
ACGACGACGACATCGGCGGCGGCAAGAGGTGACGAGGCAGCCGCGGCGGC
GGCAGCGGCTGTGACGGCGGGCCGGCTGCGGCACCTGTGGGCGCAACAAG
CGGAGGTTAGGGCGGCTACGACGAGAGACAGCGACAACGGCGACGGTCCG
GGAGAAGGGAAGGGGTGGGGGCGGGGGTCGGACGGCGGGGGAGGGGTGCT
TCTCCACGTGTGCGCCGGGCCGGGAGCGTTCCTAGCAGTCCACGAGGCTC
TCGCGGCGGGGGCAGAGGACGTCATCGACGACGACGAAAGCAGCAGCAGC
AGCAGCAGCAGCAGCGTGGGGATAGGGTGCAAGATCGGCGGGTGCACGGT
GGCGGCGCTCGGGAGCCTGAGAGAGCACGGGGCTTTCTGCGTGGCGGAGC
TGGCGATGCCGAGCAGAGGAGACCCGCTTAGCGGCTGGTCGGTTGCGGGG
GTCCGGTTTGGTAAGCTGGACGGGCGTGACGGCGAGCGAGACGACGCGAA
AATGAGGCTGGCGCGTGCCGCGGCGGGGAACTTTGTTATCAACTACGACT
GAACGTCATCGACGACGACGAAAGCAGCAGCAGCAGCAGCAGCAGCAGCG
TGGGGATAGGGTGCAAGATCGGCGGGTGCACGGTGGCGGCGCTCGGGAGC
CTGAGAGAGCACGGGGCTTTCTGCGTGGCGGAGCTGGCGATGCCGAGCAG
AGGAGACCCGCTTAGCGGCTGGTCGGTTGCGGGGGTCCGGTTTGGTAAGC
TGGACGGGCGTGACGGCGAGCGAGACGACGCGAAAATGAGGCTGGCGCGT
GCCGCGGCGGGGAACTTTGTTATCAACTACGACTGA back to top
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