mRNA_L-elsbetiae_contig5840.14293.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5840.14293.1
Unique NamemRNA_L-elsbetiae_contig5840.14293.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5840.14293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5840contigL-elsbetiae_contig5840:1009..7101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002160.1
Exons3
Model size841
Cds size840
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5840.14293.1prot_L-elsbetiae_contig5840.14293.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5840 1009..7101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816629.8323603-CDS-L-elsbetiae_contig5840:1008..15551622816629.8323603-CDS-L-elsbetiae_contig5840:1008..1555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5840 1009..1555 +
1691683697.4311101-CDS-L-elsbetiae_contig5840:1008..15551691683697.4311101-CDS-L-elsbetiae_contig5840:1008..1555Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5840 1009..1555 +
1622816629.845609-CDS-L-elsbetiae_contig5840:3433..35441622816629.845609-CDS-L-elsbetiae_contig5840:3433..3544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5840 3434..3544 +
1691683697.4424248-CDS-L-elsbetiae_contig5840:3433..35441691683697.4424248-CDS-L-elsbetiae_contig5840:3433..3544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5840 3434..3544 +
1622816629.8580678-CDS-L-elsbetiae_contig5840:6919..71011622816629.8580678-CDS-L-elsbetiae_contig5840:6919..7101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5840 6920..7101 +
1691683697.4533002-CDS-L-elsbetiae_contig5840:6919..71011691683697.4533002-CDS-L-elsbetiae_contig5840:6919..7101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5840 6920..7101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5840.14293.1

>prot_L-elsbetiae_contig5840.14293.1 ID=prot_L-elsbetiae_contig5840.14293.1|Name=mRNA_L-elsbetiae_contig5840.14293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=280bp
AAAATTCEVVKVSGGVSPGSYALSAVLRSAGAGRGDVYEQAGPDGETAAV
LLFTQSSVRRGRRLEHEGRQQQHQQQLQQQHWRSRSLTECASGFWINQSG
DGGGSTTTASAAAASSAAASSSSSPDVVDGVVYPVYATSDCADHPANVSA
DWFSVGCAACELELSPPLVIECDDDEHAHDSSGAMSEQPTPSPSLASALG
TTLPSSSSELSAPGNVPDEAAGTLQPVAAPMTPAPVGLPPSAQPETPPPG
TGDGEPADGSRSSSDASSERDDGAGVEGEG
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mRNA from alignment at L-elsbetiae_contig5840:1009..7101+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5840.14293.1 ID=mRNA_L-elsbetiae_contig5840.14293.1|Name=mRNA_L-elsbetiae_contig5840.14293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6093bp|location=Sequence derived from alignment at L-elsbetiae_contig5840:1009..7101+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGCAGCAGCCACGACGTGCGAGGTTGTCAAGGTCAGCGGAGGCGTGTC
GCCGGGCTCGTACGCCCTGTCGGCCGTCCTGCGGTCCGCGGGGGCCGGTC
GGGGCGACGTGTACGAACAGGCGGGGCCGGACGGCGAGACGGCCGCGGTG
CTCCTCTTCACGCAGAGCAGCGTTCGCCGCGGGCGGCGCCTCGAGCACGA
GGGCCGACAACAGCAACATCAACAACAACTACAACAACAACATTGGCGGA
GCCGATCGCTGACCGAGTGCGCGTCTGGGTTCTGGATCAACCAGTCCGGG
GACGGCGGCGGCAGCACCACAACCGCCTCCGCCGCCGCCGCCTCCTCCGC
CGCCGCCTCCTCCTCCTCCTCGCCAGACGTAGTAGACGGCGTGGTGTACC
CCGTGTATGCCACGAGCGACTGCGCCGACCACCCCGCGAATGTGAGCGCG
GACTGGTTCTCCGTCGGCTGCGCCGCGTGCGAGCTGGAACTGTCCCCGCC
GCTGGTGATCGAGTGCGACGATGATGAGCACGCGCACGACTCCTCGGGTG
AGTTTTGAGTTTTGAGGTGGTGGTAAATAATAGTTGTGGGAAAGAGCCCC
GCTTCCTTCTTGGAGGTCTGGCAGGCCCACCCGACCAGCCGAGTTTTTTT
ACTGCTGAATACGTAAGAGAGCAAGCAGGCTGTTTGTTACAATTACACGA
CACTGCTGTCGCCATTGATTGCTGTCCCTAAATATCGTACGGAGAATCAT
TCATGCAAACCCGAGAAACGTATAGATATACGCATGCCTCGGTTGTTCTA
CTACTACTGTGTCACACACAAGGCAACGCTTTGATCATGTCTGTATAGTC
TACGTTTGCACCGCGCGCCAAATTGCCGCTGAGTGGGTCGGACGATGTTT
CGTCCCTTACAATACCCGTCTACAACAGCCGCCCCGGCGGCCCGCTAATA
AGAAAGCTCCGTTGAAGGAAACCACAGGCTGATGAGATGCTGAGATGTTG
TTTTTATGTAAACAAAAGATAAGAAGAGGAAAAGTGTGGGGGCTCCGCGC
GTGCTGATCACCACAATAAAATCGCTCCATACGGCAGACGGTAGGTATAG
TGATCTCTGGTTTCGCGTAAGAAGTCAGGCTGGGCCTGATCTCCGGTTCC
TTATCAGCGGGCCGGTACCCATCACTGCTGTGCAAAATTAACCGCGTTGT
CTGAAATGAAATTTTCACCAACGATCTGACAGTCTGTATATATGGATTAG
GTATTTCGTGCGAGTTGGACTTAGACGGAAAAATAGGGGGGGGGGGGGGC
AGTCATGTTACATGGTATGCCTACAACAGTCCCTCTGGAACGACACTTTC
ACAGACAGACTGGACGTAAATAGGCAGCTGACATTTATATACATTAGATA
ATTTAAAATTTGCTGTCAGCGGTCGTCTAATGTACTTACTTGCTGTGCGA
AAAAAACTCCCTCCAGGGGAGGTAGGCGGGCTGTTGAAGATCCCACTAGC
TCTCCCTTTCTGGGTTTTCTGGAAAACTATTTTTTCGTGGACGGACGTGA
ACACACACCCGAACAAATTTAGCCAAAAGTGAACTGTGTTTTATTTCTAA
AAGTAAATGTTCTACAAGCAAATGTCAGCGGCCTACACGCCCCAACCGGT
GAAAAAGGCGTTCCAGTTGACAGTCCCGTTGACAGTCTCTTTCCAGGGGG
ACTGAGCTGTGGACACGTGGACACACTTACCCTTCCTTACCATCCCAAAA
ATACAGCACAGTTTTTTTTTTCCCGCTGGCCACGAGTTACAGCGGTGGTG
GTGGTGGTGGCGGTGATGATTCCCCGGGGTAGGTCTGGCCTCGGCATGCT
TGCCGGAAGTGGGTGTTTAAAATACCCGACATCGTCTGCTTTGTTGGAGA
AGAGAACCTGGCCGCGTTCGGCCAGGGACCCCCGGCGGACGTCCAGTGGG
CTTTTTATTTTGTTGTAATTTAGTGGCCTCTAATTAAGCTGTGTAGAGGG
GGCCCCTCCGCGCATGGCGTATCTTTGCCTGACACCGTTCGACCAGAGAG
AGGCCTTTAGACCAGACCGGCCTTCTTCTCAGAGGTCAATAATGTGAACT
GTCTGTCTGTCTGTCTGTCTGTATCTGTCTGTCTCTGTTCCTGTCTACAT
ACATACGTCCTCTATCTATCTATCTCCCTCTCTCTCTCTCTCTTTCTCTC
TATCTCTCTCTCCCTCTCTCTCTAAATATCTCCCCGCTCTCTGTCTATGT
CTCCTGTCTCCGTTTCGGTCTCTCTCTCTCTCTCCCCCCCCCCCCCCCCC
CCCCCCTCTTCTCTGGGCAACGGTTTTATCACCGCTAAGAACTCGCGCTC
GCTTCCCACGCCATTACCACATCTCACTCTCACTCCCACTCCCACTCCTA
CTCCCACTCTCACTCTCACTCTCAGGGGCCATGAGCGAACAACCGACCCC
GTCCCCCTCGCTCGCCTCGGCATTGGGCACAACTTTGCCCTCCTCCAGCT
CCGAGCTTAGTGCTCCCGGCAACGTGCCCGACGAAGGTGAGTGTGGGCTG
GCGTCTAGGTGGGTTTGTCGGGGGTATACACTTGTGTGCGCAGCAATAAT
CTCCCCGAGGGTATAAGGTGCCCCGGCAACACAAACGAGGACTAACTTAG
CCGACGTCGGCGTTGCGGTTGAAATATCAGAAAAGTCGTGCTGGTGCTGG
GTTCCGCACGAAGCAAGGCCGGGCAGACGGGGCCGCCGCGGTCACAGAGC
CGGGGCTCGGCGGGCGAGGATGGGGAGGGGGGGGGGGGGGGGGGATGTCG
GAATGAGAAGGGCGTGTAGGTACACATTTACTGGTGTTTATGGTTACTGC
TGTCTAAACGTTGTTGCCCTCTCGTCTCGTAGGCCTTCCCTTGGTGAAAA
AAATCGAGGCATATCTAAAGGTGCCGAACGCCAGTTGTTGTTGTTATCGT
TGTCTTCACATTAAAAACCGTTTTGGTCTCTCCACCCAGTACCTCCCTAT
GGGCGTACTATCCCAACAATTGGTGCGGTCAATTCCCGTGGTCACAGGCT
ACGTATGTAGCTTTACCTAAAAAAAGGTATACGAAAATAAAATAGACCCG
AAGGGACATCAAAGCGATAAAACCAAAGACAAAATAGTGTGATGAGTTGT
TGTTGTTGTTTCTTCACATCAGCTCGTATAATCGAGATTGCTAGTTCCAA
AAAATCTAGCAACTCACGGCCCGTGGTCACAGAAGTGCTAGAGCCATCAG
AGGATCCGAATAGGACATACGCAGATCCACCGGGCAAGGGTACACAAGGC
CGAGGAGGTACACCTATGAATATGCTGGTAAAGAAAAACACATATCCTAC
TGAATCACGCATCCACGAATCTCCATTCGACTACAGGACGACGTTTCCCC
CCCGTCCACTATTAACCAATGCATGGTTACCGGCTACAGCCAAATGACTG
TCTGGAGTGCTGCCTGTACAAAAATACACGGGTTGCGTGGTGGGTATGGG
AGGAATGCAATTGCTGTCTGAAGTGCTGTGAGAGTGACAACCCGCCGATA
CGCGGTGAAAAAGAACAAAGCCAACCAAAAGCCACCAAGCAATCGACAGT
TACCAAGTCTATCCAATCGTCCGTGGTACATAGGTAGAGTACAAACAACG
ACACCGATCCGTTTCGTTCCACATTGAATGGTTCTTCCACGAGCGGGTAC
ACCATGTAGGTGCAGTGCCAGGGTAGGTATATATAACGCAGGCATTTCTG
CCGCGTCTCTCTACAAAACCAGTGACGTCATCTCAGAGACCATGCACCAA
GATTCAGGGGGAAAACGAAAAATAATTGCCAACACAAAATGTTTGTCCGT
GCGCCACGGCTCGACGTCATCCGATGCTCCGCTGTTGCCGCTGTAGCCAA
CCCAGCATCACCACTCTCTCGATCCGCTCCGTACGTAAACGATTCCATTG
TTGTCCTTCCCAGCCAGTTCCTCGCTTTCTCCCTCGTTGCACTCAAGGTG
CTGGTTTATGATTTGTTTTCTCGCACTGAGGGTCAACCAAGCCAGATCAG
TTCGTCGCCAATCGTCCGAAGAGGCCCTCCTCCTTTGCGAATCCAATAGG
TTACCAAGACAGTAGTACAGCTCTCTCTATCACCTAGGGCCGTGTACGTT
GAGTTTCTTCGCCTCTATTGGTGGCGCCTGCCTCCGCGCACAAAAACTGA
GATGGGCATTGCTGTCTACGCTAAGACGCCAAAAAAGGGTCGCACATCTG
GTTTTTCGTGTCTGGCTCACCAAATTACGACCCAACTCTACCGCAGCGCG
AACCTCGCGGCGGCGCGCAGCAGCAAGAAGGTATCGGTCCCCTTGAGGGT
GAGTCTAGCCTTGCTCGTTAGAAAGACCCCCCCTCGCTACATTTTATGGG
TCATGCATGAAGCAAGCCTTGCCGAGGCAGCGGAGGGAACGGAAAAGCGT
CATGTGCATGCACTGCAGGAGTATACCCCCCTCAATTCCACCCCCTTCCC
GGTGCAAGCGCATTACCAAAAGCCGTATCTCGTCGGACTTCCCTCCTTGT
TTCCCTTTATATACCGACACTCGGTGTACACAGGCGTACTTTACAGCAGC
AGTAATGCCTTCGTTTCCACCGTGCCATTATCCCCCTCCCCACCCCCCCA
ATGGGATAAAATGGGGCCTCCAGCTACGAATAGCCTGGAGGATCCGCCCA
GGTTACTACCCCCGCGTGGACAAAGGGTCCACGCGGGGCTGTTCCGCAGT
GAGTATTAACTCTGGTAGAACAAAATATAACCCAAGTGTTGGGTGGGCGG
AACGGTTTGTCATTCCTCACTACTTTCTGTTTCGTTAGGGTTGGGTAGGC
TTGTCTCGAGTGAGGACAAGCCACTCTCTTTTCTTCAGCCAACCTTTTAT
CATCTACCGACCCCCTTCGTAGTTCCATTATTTCGACAATACAGTACTGA
AGTATAGTTGTGCATGACGTAAGAGCTTGGGTTAAAATGATATATGTCGT
CTGCGAAAAAAGTCCGATTTAGCCATTGGCGCTCCAGAAAAAAAGGCCGC
CCGCTGCGTGCCGCCACAGCCATTTGTACGTACGTAACTTATTCGGGGTA
AAAACGCAGAGGACGGGGAGAAGGGGCCCTTGTGGCCTACGGCACGGTGA
TGCATGCGCAGGCGGAAGGAGAGACGGGCCGATACCGTAGGTGACACAAG
ATACCACACCCCCTGGACAGATTTTCAAACCTCGATTCCTCCCCAGCGCA
AGACGAGTGCCAGAGCCGAAAGGGGGTGCGTTGGAAAGATCTGAGCGAGA
GGGCTGTCCGAAAATATGTCGTTTGGTTCTGGCACCTTCGTTACGGAGTA
ATGGAGCTCTAACATTCGGCCCAGGGGGTGTGTTATCTTGTGTCACCTAC
GGTAGTCAGATCCCCTCCGCACCCCCCATGCGTCGAGAAGGGAAAAAAAG
CAACACGCCTGACCGAGACCGAGACCAAGACCGAGACCTCCCACCGCGTG
ATAACGCTCGCAGATAAAAACCAAACCAAAAGTAGATAGGTGTACACATA
TACCTATCTCTGTGTCCCCCTCTCAAGTTCCCTGGTGGCAAGTAACCCCA
GCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCC
TACACCCCACCACTTAAAAAGAGTTTTNNNNNNNNNNGTGCCCCCCTCTC
ATGTCCTCTGAGGGCAAATCCCCCCACCGCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCCCCTCCCCCGTTCACCAACCGTCGCC
ACCGCCGCCGCCACCAACACCCTTCCTTCCGGTTCCCACCGTCGTCGCCT
CACCACCAAAGCCGCCGGAACCCTTCAGCCCGTGGCCGCTCCGATGACCC
CCGCCCCTGTGGGTCTACCCCCCTCGGCACAGCCAGAGACGCCACCCCCG
GGCACGGGCGACGGTGAACCTGCAGACGGTAGCAGAAGCAGCAGCGACGC
GTCGTCCGAGAGAGATGACGGGGCGGGCGTCGAGGGAGAGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5840:1009..7101+

>mRNA_L-elsbetiae_contig5840.14293.1 ID=mRNA_L-elsbetiae_contig5840.14293.1|Name=mRNA_L-elsbetiae_contig5840.14293.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1680bp|location=Sequence derived from alignment at L-elsbetiae_contig5840:1009..7101+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGCAGCAGCCACGACGTGCGAGGTTGTCAAGGTCAGCGGAGGCGTGTC
GCCGGGCTCGTACGCCCTGTCGGCCGTCCTGCGGTCCGCGGGGGCCGGTC
GGGGCGACGTGTACGAACAGGCGGGGCCGGACGGCGAGACGGCCGCGGTG
CTCCTCTTCACGCAGAGCAGCGTTCGCCGCGGGCGGCGCCTCGAGCACGA
GGGCCGACAACAGCAACATCAACAACAACTACAACAACAACATTGGCGGA
GCCGATCGCTGACCGAGTGCGCGTCTGGGTTCTGGATCAACCAGTCCGGG
GACGGCGGCGGCAGCACCACAACCGCCTCCGCCGCCGCCGCCTCCTCCGC
CGCCGCCTCCTCCTCCTCCTCGCCAGACGTAGTAGACGGCGTGGTGTACC
CCGTGTATGCCACGAGCGACTGCGCCGACCACCCCGCGAATGTGAGCGCG
GACTGGTTCTCCGTCGGCTGCGCCGCGTGCGAGCTGGAACTGTCCCCGCC
GCTGGTGATCGAGTGCGACGATGATGAGCACGCGCACGACTCCTCGGGCA
GCAGCAGCCACGACGTGCGAGGTTGTCAAGGTCAGCGGAGGCGTGTCGCC
GGGCTCGTACGCCCTGTCGGCCGTCCTGCGGTCCGCGGGGGCCGGTCGGG
GCGACGTGTACGAACAGGCGGGGCCGGACGGCGAGACGGCCGCGGTGCTC
CTCTTCACGCAGAGCAGCGTTCGCCGCGGGCGGCGCCTCGAGCACGAGGG
CCGACAACAGCAACATCAACAACAACTACAACAACAACATTGGCGGAGCC
GATCGCTGACCGAGTGCGCGTCTGGGTTCTGGATCAACCAGTCCGGGGAC
GGCGGCGGCAGCACCACAACCGCCTCCGCCGCCGCCGCCTCCTCCGCCGC
CGCCTCCTCCTCCTCCTCGCCAGACGTAGTAGACGGCGTGGTGTACCCCG
TGTATGCCACGAGCGACTGCGCCGACCACCCCGCGAATGTGAGCGCGGAC
TGGTTCTCCGTCGGCTGCGCCGCGTGCGAGCTGGAACTGTCCCCGCCGCT
GGTGATCGAGTGCGACGATGATGAGCACGCGCACGACTCCTCGGGGGCCA
TGAGCGAACAACCGACCCCGTCCCCCTCGCTCGCCTCGGCATTGGGCACA
ACTTTGCCCTCCTCCAGCTCCGAGCTTAGTGCTCCCGGCAACGTGCCCGA
CGAAGGGGCCATGAGCGAACAACCGACCCCGTCCCCCTCGCTCGCCTCGG
CATTGGGCACAACTTTGCCCTCCTCCAGCTCCGAGCTTAGTGCTCCCGGC
AACGTGCCCGACGAAGCCGCCGGAACCCTTCAGCCCGTGGCCGCTCCGAT
GACCCCCGCCCCTGTGGGTCTACCCCCCTCGGCACAGCCAGAGACGCCAC
CCCCGGGCACGGGCGACGGTGAACCTGCAGACGGTAGCAGAAGCAGCAGC
GACGCGTCGTCCGAGAGAGATGACGGGGCGGGCGTCGAGGGAGAGGGCCC
GCCGGAACCCTTCAGCCCGTGGCCGCTCCGATGACCCCCGCCCCTGTGGG
TCTACCCCCCTCGGCACAGCCAGAGACGCCACCCCCGGGCACGGGCGACG
GTGAACCTGCAGACGGTAGCAGAAGCAGCAGCGACGCGTCGTCCGAGAGA
GATGACGGGGCGGGCGTCGAGGGAGAGGGC
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