mRNA_L-elsbetiae_contig5835.14283.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5835.14283.1
Unique NamemRNA_L-elsbetiae_contig5835.14283.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5835.14283.1 vs. uniprot
Match: D8LBX7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBX7_ECTSI)

HSP 1 Score: 627 bits (1618), Expect = 1.130e-207
Identity = 424/683 (62.08%), Postives = 479/683 (70.13%), Query Frame = 3 
Query:  930 RSKRPGSNHVSVPVLPLRPVRLPLPCDAVGVAVAPTLASEDEKSGKPPPNLPAAGGASSAVPRTLVVSLSGQGRLLGFMAPRSGKELEGWRLDTGRGGVRVGDSAGVERRVRSQLERLSSLGRQCAALSAESAERDREIGVLRGATVLLPPLVAAAA--RRVRADGGGAPASSGSLAHSISMAPDTQEAAAGFADSYGGGQGAGQSDALQVRVCVRLWPREGGRARGDLQAVG-GDDGG-GRWFIVTRIVAEGNAGXXXXXXXXXDNADEVEEGWAWSTSALVPMGSLRXXXXXXXXXXXXLPSARPVTASSWLQFRFDADGGSG---GGGPV---------DEAAGVCVELGSSRFDVLDWGVRLSSVPRSAAAVRAAARGPGSSFCGPELAIAGVLGEGPSFSFSPSLAGG-----------------CTSSSGIGGAPRVGSAAARPAVPAAWSSFRLRLASPDRDAGALLSLMVPASTSXXXXXXXXXXXXXXQGGSRAEIAIRVAGQVAIVRATDFAAXXXXXXXXXAVGQVGGRGRTRAAAGSREVELAVMCSHAAMAPLVREALLSRARLLVVAPPEDSRGPELSIGGGSGNGGAGRLCGGGVVARGDAAARLAREIHPIKQAAADAGDAARALGATRASDGPSVESSTEALALMYRVGEIYQDLRRRQESVGYVV 2879
            R  R G    S  VLPLRPVRLPLPCD VGVAVAP LA+  E +G        +   ++   RTLV+S S  GRL+GFMAP+S  ELEGW LDTG+GGVR G  AGVERRVR QLERLSSLGRQCAALSA SAERDREI VLRGATVLLPPL AA+A  R     GG +   S +L HS+SMAPDTQ+ AAGF D+YGGG GA Q+DAL+VR+CVRLWPREGGRA G+LQ V  G+DGG GRWF+VTRIV E     XXXXXXXX   + V EGWAWSTS++VPMG L   XXXX      LPSARPVT +SWLQFR+ A+GG G   GG P          DEAAGVCVELGSSRFDVLDWGVRL SVPRSAAAVRAA+RG GSSFCGP+LAIA V G       SPS AGG                            R  S AARPAVPA+WSSFRL +  PDRDAGALL+L+VP    XXXXXXXXXXXXX     +AE+A+RVAGQVAIVRATD A          A G+  G GR RAAAG    E+AV CSHAAMAPLVREAL+ RA  L+V+ PE+ RG E  +G  SG  G+G +   GV  +GDAAARLAREI+P++QA AD GDAARALGA RA DGPS +S+ EALALMYR+GEIYQ LRR+QE+ G V+
Sbjct:  303 RPTRVGVRGASPAVLPLRPVRLPLPCDTVGVAVAPVLAAAAEGAGT------TSSDTTAGFLRTLVLSFSAGGRLVGFMAPQSVGELEGWSLDTGKGGVRAGGGAGVERRVRCQLERLSSLGRQCAALSAVSAERDREIRVLRGATVLLPPLAAASASARNGNGTGGASHTPSETLGHSVSMAPDTQQEAAGFGDAYGGGPGAVQADALRVRLCVRLWPREGGRASGELQTVAEGEDGGAGRWFVVTRIVEEDGGTGXXXXXXXXXXXENVGEGWAWSTSSMVPMGPLCQGXXXXCSAALTLPSARPVTVTSWLQFRYGANGGGGDWDGGSPGGGTGGENAHDEAAGVCVELGSSRFDVLDWGVRLPSVPRSAAAVRAASRGRGSSFCGPDLAIADVFGG------SPSAAGGRKXXXXXXXXXXXXXXXXXXXXXXXXGMRAVSTAARPAVPASWSSFRLHVRCPDRDAGALLALLVPXXXXXXXXXXXXXXXXXD---GQAEVAVRVAGQVAIVRATDCA---------PAGGE--GDGRARAAAGPTAAEVAVTCSHAAMAPLVREALVRRAGSLLVSSPENGRGREPGVGN-SGGSGSGEI---GVRQQGDAAARLAREIYPMRQAVADVGDAARALGAERAGDGPSTKSAKEALALMYRMGEIYQSLRRQQETAGLVL 955
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5835.14283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBX7_ECTSI1.130e-20762.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5835contigL-elsbetiae_contig5835:6278..9456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_003670.1
Exons2
Model size2879
Cds size1125
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5835.14283.1prot_L-elsbetiae_contig5835.14283.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5835 8332..9456 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816628.9446654-UTR-L-elsbetiae_contig5835:6277..76031622816628.9446654-UTR-L-elsbetiae_contig5835:6277..7603Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5835 6278..7603 -
1691683696.7673342-UTR-L-elsbetiae_contig5835:6277..76031691683696.7673342-UTR-L-elsbetiae_contig5835:6277..7603Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5835 6278..7603 -
1622816628.9567308-UTR-L-elsbetiae_contig5835:7903..83311622816628.9567308-UTR-L-elsbetiae_contig5835:7903..8331Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5835 7904..8331 -
1691683696.7801492-UTR-L-elsbetiae_contig5835:7903..83311691683696.7801492-UTR-L-elsbetiae_contig5835:7903..8331Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5835 7904..8331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816628.9678283-CDS-L-elsbetiae_contig5835:8331..94561622816628.9678283-CDS-L-elsbetiae_contig5835:8331..9456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5835 8332..9456 -
1691683696.7890265-CDS-L-elsbetiae_contig5835:8331..94561691683696.7890265-CDS-L-elsbetiae_contig5835:8331..9456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5835 8332..9456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5835.14283.1

>prot_L-elsbetiae_contig5835.14283.1 ID=prot_L-elsbetiae_contig5835.14283.1|Name=mRNA_L-elsbetiae_contig5835.14283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=375bp
MFTHPGVRTVAICRDGATTAVAGIIDRAASYSLAVDVNSDEGGVSGTATG
RRLGTLAGVDGTAPTASCMVWIEDGHRGGSALGDGKGFPLPSPVFRSLFG
GEQLSARSSQPVSGSAAAENDDDAHSNSALPVTASVVLVGDTAGTVRWSP
VPPRPGFSGGVLASLPGEATAIVALLPQLDAESRAVGVLLVGANGAVLDL
AATAASATSSGNGASRKRSRSDDAGEHGRRREGGGSGCGTTTDRGVPPLP
PRPSVSRRLLELPFPVTSACSVPGFFVHCHAGALFATPVPAAGGGGANNT
RAGRRQQPSTAPKDPVRTTYPFRYYLCARCACRYLAMRLVWPWHRRSPAK
MKSLASPPPTSQPLVALALRCHGL*
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mRNA from alignment at L-elsbetiae_contig5835:6278..9456-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5835.14283.1 ID=mRNA_L-elsbetiae_contig5835.14283.1|Name=mRNA_L-elsbetiae_contig5835.14283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3179bp|location=Sequence derived from alignment at L-elsbetiae_contig5835:6278..9456- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTACACACCCAGGTGTGAGGACTGTGGCCATTTGCAGAGACGGGGC
AACCACCGCCGTCGCCGGCATCATCGATCGTGCCGCCTCGTACAGTCTCG
CGGTCGATGTGAACAGCGACGAGGGTGGGGTGTCCGGAACGGCAACAGGG
CGGCGGCTTGGCACCCTTGCCGGTGTGGACGGTACTGCGCCGACAGCGTC
CTGCATGGTATGGATAGAAGACGGACACCGCGGCGGCAGTGCTTTGGGTG
ATGGCAAGGGCTTCCCGCTACCCTCGCCGGTGTTCCGTTCGTTGTTCGGC
GGGGAGCAGCTGTCCGCGCGTTCCTCGCAGCCCGTGTCTGGGTCCGCAGC
TGCCGAGAACGACGACGATGCGCACTCGAATTCAGCGTTGCCAGTGACGG
CCTCGGTGGTTTTGGTCGGTGATACGGCGGGAACCGTGCGGTGGTCGCCG
GTGCCCCCGCGCCCCGGATTTTCTGGCGGTGTTCTCGCCAGTCTTCCCGG
CGAGGCAACCGCTATTGTCGCCCTGCTACCGCAGCTGGACGCCGAGTCGC
GCGCGGTCGGAGTTCTTCTCGTCGGTGCCAACGGTGCCGTACTGGATCTC
GCCGCTACCGCTGCTAGTGCAACATCATCGGGCAACGGAGCATCTCGAAA
GCGGTCGAGATCCGACGATGCCGGCGAGCACGGCCGCCGCCGCGAAGGCG
GCGGGAGCGGGTGCGGGACAACAACAGACCGGGGTGTACCACCACTACCA
CCACGGCCTTCGGTCTCTCGACGCCTTCTCGAGCTGCCGTTCCCGGTTAC
CTCAGCCTGCTCGGTGCCTGGATTTTTCGTGCACTGTCATGCAGGCGCCC
TTTTCGCCACCCCCGTCCCTGCGGCAGGGGGGGGGGGGGCGAACAATACA
CGCGCCGGCCGCCGGCAGCAACCTTCGACCGCTCCAAAAGACCCGGTTCG
AACCACGTATCCGTTCCGGTACTACCTCTGCGCCCGGTGCGCTTGCCGCT
ACCTTGCGATGCGGTTGGTGTGGCCGTGGCACCGACGCTCGCCAGCGAAG
ATGAAAAGTCTGGCAAGCCCCCCCCCAACCTCCCAGCCGCTGGTGGCGCT
AGCTCTGCGGTGCCACGGACTCTAGTCGTGTCGTTGTCGGGCCAGGGTCG
GCTCTTGGGTTTCATGGCCCCGCGGTCTGGGAAGGAACTAGAGGGCTGGA
GATTAGATACCGGGAGGGGAGGCGTGAGGGTCGGCGACAGCGCCGGGGTG
GAGCGCCGCGTGCGGAGCCAGCTGGAGCGGCTATCAAGCCTGGGAAGGCA
GTGCGCGGCGCTTTCCGCGGAGTCGGCGGAACGAGACCGAGAGATTGGCG
TTCTTCGGGGAGCGACGGTTTTGTTGCCACCGCTCGTCGCAGCCGCAGCT
CGCCGGGTCAGGGCTGACGGCGGCGGCGCACCCGCGTCGTCCGGATCTCT
GGCACACAGTATCTCGATGGCACCGGACACGCAGGAAGCGGCCGCTGGTT
TTGCTGACTCTTACGGCGGTGGACAGGGGGCGGGGCAGTCCGATGCTCTC
CAGGTAGGGCAGTTCATGAACTCGGGAGTTGGCTTGAGAGAGTAGTTGAT
TTCCTGATACAGGTCTGGTTGACCAACGATGACTGCTGTAGATGATGATG
GTCGAGCGTCGCATGCAAGAAAAATCCTCTTTGTGAATGCCTCAATTCAT
GCACTCCAGTCGGCTTATAGACACCCATTTGATTGTAACCCCCATCTACA
GAAGAAACAAACGGACGTGATCTGTGGGTCGTTATCAGCATCTATTCATC
ATACACAATCCCCGATAAGCAATTGATTAATAAATAACATAACCCGTCTC
CAGGTGCGGGTGTGCGTACGGCTGTGGCCTCGAGAGGGAGGCCGCGCGAG
GGGAGACCTGCAGGCCGTCGGAGGGGACGACGGTGGCGGTCGCTGGTTTA
TCGTTACAAGAATTGTGGCGGAGGGCAACGCCGGCGGCAGCGGCGGCGGC
GGGTTCGGCGGGGATAACGCGGACGAAGTCGAAGAAGGATGGGCTTGGTC
GACGTCCGCCTTAGTACCGATGGGCTCCTTGCGGCAGGGCTGGCCTTGGA
GCTCCTCGGTTGCGGTAACTCTGCCCTCCGCGCGCCCGGTCACGGCCAGT
TCGTGGCTCCAGTTTCGGTTCGATGCGGACGGTGGTAGCGGTGGAGGAGG
CCCGGTTGACGAGGCTGCCGGAGTTTGCGTCGAGCTTGGAAGCTCGCGCT
TCGACGTCTTGGATTGGGGCGTCAGGCTTTCCTCCGTCCCGCGCAGCGCG
GCCGCCGTTCGAGCGGCGGCCCGCGGCCCTGGCTCCAGCTTCTGTGGGCC
CGAGCTGGCGATCGCGGGAGTCCTCGGCGAGGGGCCTTCCTTCTCCTTCT
CGCCTTCACTTGCCGGCGGCTGTACGAGTAGCAGTGGCATCGGCGGAGCA
CCGCGGGTAGGTTCTGCTGCGGCGCGGCCGGCGGTGCCCGCAGCTTGGAG
CAGCTTCCGGCTGCGCTTGGCCAGCCCGGACCGTGATGCCGGCGCGTTGC
TGTCTCTGATGGTGCCGGCTTCGACCTCGCCCCCTCCCGCTTCGGACAGA
AACGGCGGCGGCGGTGGCGGCCAAGGTGGCTCCCGAGCAGAGATCGCGAT
CCGGGTTGCGGGGCAAGTGGCGATCGTCCGCGCCACCGACTTCGCGGCGG
CGGCGGCGGCGGCGGCGGGGGGGGGGGCGGTGGGACAGGTTGGAGGGCGC
GGTCGGACGCGAGCGGCAGCAGGCTCTAGGGAGGTAGAGTTGGCCGTGAT
GTGCTCGCACGCGGCGATGGCCCCACTGGTGCGAGAGGCCCTGCTCAGCC
GAGCGAGACTGCTGGTGGTTGCGCCGCCCGAGGACAGCCGAGGGCCAGAG
CTGAGCATCGGGGGCGGTAGCGGGAACGGGGGAGCCGGTAGACTCTGCGG
CGGCGGGGTGGTTGCGCGAGGGGATGCTGCGGCGCGACTGGCGCGAGAGA
TCCACCCGATAAAGCAGGCTGCTGCGGACGCGGGCGACGCGGCGAGGGCG
CTTGGTGCAACGCGCGCGAGCGATGGTCCGAGCGTTGAGAGCTCCACGGA
AGCGCTGGCGCTCATGTATAGAGTGGGAGAGATTTATCAGGACCTACGAC
GTCGACAAGAGAGTGTTGGATATGTGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5835:6278..9456-

>mRNA_L-elsbetiae_contig5835.14283.1 ID=mRNA_L-elsbetiae_contig5835.14283.1|Name=mRNA_L-elsbetiae_contig5835.14283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2250bp|location=Sequence derived from alignment at L-elsbetiae_contig5835:6278..9456- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTACACACCCAGGTGTGAGGACTGTGGCCATTTGCAGAGACGGGGC
AACCACCGCCGTCGCCGGCATCATCGATCGTGCCGCCTCGTACAGTCTCG
CGGTCGATGTGAACAGCGACGAGGGTGGGGTGTCCGGAACGGCAACAGGG
CGGCGGCTTGGCACCCTTGCCGGTGTGGACGGTACTGCGCCGACAGCGTC
CTGCATGGTATGGATAGAAGACGGACACCGCGGCGGCAGTGCTTTGGGTG
ATGGCAAGGGCTTCCCGCTACCCTCGCCGGTGTTCCGTTCGTTGTTCGGC
GGGGAGCAGCTGTCCGCGCGTTCCTCGCAGCCCGTGTCTGGGTCCGCAGC
TGCCGAGAACGACGACGATGCGCACTCGAATTCAGCGTTGCCAGTGACGG
CCTCGGTGGTTTTGGTCGGTGATACGGCGGGAACCGTGCGGTGGTCGCCG
GTGCCCCCGCGCCCCGGATTTTCTGGCGGTGTTCTCGCCAGTCTTCCCGG
CGAGGCAACCGCTATTGTCGCCCTGCTACCGCAGCTGGACGCCGAGTCGC
GCGCGGTCGGAGTTCTTCTCGTCGGTGCCAACGGTGCCGTACTGGATCTC
GCCGCTACCGCTGCTAGTGCAACATCATCGGGCAACGGAGCATCTCGAAA
GCGGTCGAGATCCGACGATGCCGGCGAGCACGGCCGCCGCCGCGAAGGCG
GCGGGAGCGGGTGCGGGACAACAACAGACCGGGGTGTACCACCACTACCA
CCACGGCCTTCGGTCTCTCGACGCCTTCTCGAGCTGCCGTTCCCGGTTAC
CTCAGCCTGCTCGGTGCCTGGATTTTTCGTGCACTGTCATGCAGGCGCCC
TTTTCGCCACCCCCGTCCCTGCGGCAGGGGGGGGGGGGGCGAACAATACA
CGCGCCGGCCGCCGGCAGCAACCTTCGACCGCTCCAAAAGACCCGGTTCG
AACCACGTATCCGTTCCGGTACTACCTCTGCGCCCGGTGCGCTTGCCGCT
ACCTTGCGATGCGGTTGGTGTGGCCGTGGCACCGACGCTCGCCAGCGAAG
ATGAAAAGTCTGGCAAGCCCCCCCCCAACCTCCCAGCCGCTGGTGGCGCT
AGCTCTGCGGTGCCACGGACTCTAGATGTTTACACACCCAGGTGTGAGGA
CTGTGGCCATTTGCAGAGACGGGGCAACCACCGCCGTCGCCGGCATCATC
GATCGTGCCGCCTCGTACAGTCTCGCGGTCGATGTGAACAGCGACGAGGG
TGGGGTGTCCGGAACGGCAACAGGGCGGCGGCTTGGCACCCTTGCCGGTG
TGGACGGTACTGCGCCGACAGCGTCCTGCATGGTATGGATAGAAGACGGA
CACCGCGGCGGCAGTGCTTTGGGTGATGGCAAGGGCTTCCCGCTACCCTC
GCCGGTGTTCCGTTCGTTGTTCGGCGGGGAGCAGCTGTCCGCGCGTTCCT
CGCAGCCCGTGTCTGGGTCCGCAGCTGCCGAGAACGACGACGATGCGCAC
TCGAATTCAGCGTTGCCAGTGACGGCCTCGGTGGTTTTGGTCGGTGATAC
GGCGGGAACCGTGCGGTGGTCGCCGGTGCCCCCGCGCCCCGGATTTTCTG
GCGGTGTTCTCGCCAGTCTTCCCGGCGAGGCAACCGCTATTGTCGCCCTG
CTACCGCAGCTGGACGCCGAGTCGCGCGCGGTCGGAGTTCTTCTCGTCGG
TGCCAACGGTGCCGTACTGGATCTCGCCGCTACCGCTGCTAGTGCAACAT
CATCGGGCAACGGAGCATCTCGAAAGCGGTCGAGATCCGACGATGCCGGC
GAGCACGGCCGCCGCCGCGAAGGCGGCGGGAGCGGGTGCGGGACAACAAC
AGACCGGGGTGTACCACCACTACCACCACGGCCTTCGGTCTCTCGACGCC
TTCTCGAGCTGCCGTTCCCGGTTACCTCAGCCTGCTCGGTGCCTGGATTT
TTCGTGCACTGTCATGCAGGCGCCCTTTTCGCCACCCCCGTCCCTGCGGC
AGGGGGGGGGGGGGCGAACAATACACGCGCCGGCCGCCGGCAGCAACCTT
CGACCGCTCCAAAAGACCCGGTTCGAACCACGTATCCGTTCCGGTACTAC
CTCTGCGCCCGGTGCGCTTGCCGCTACCTTGCGATGCGGTTGGTGTGGCC
GTGGCACCGACGCTCGCCAGCGAAGATGAAAAGTCTGGCAAGCCCCCCCC
CAACCTCCCAGCCGCTGGTGGCGCTAGCTCTGCGGTGCCACGGACTCTAG
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