mRNA_L-elsbetiae_contig5832.14280.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5832.14280.1
Unique NamemRNA_L-elsbetiae_contig5832.14280.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5832.14280.1 vs. uniprot
Match: D7FP45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP45_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 4.130e-45
Identity = 103/216 (47.69%), Postives = 125/216 (57.87%), Query Frame = 1 
Query:    1 VIHKTEFVTEAGEAMRMVVRQDVKGRLGMKQFGLSVLVFDFEPAGAITTENSPTASGRLAPASGSSTADAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEAEGEERGTVVPATSLRRGQGCVVLVHDRWNGHKELYRNHRLVYSVKKECSDGNLNSWVIPLPFGRVVLKLTNKFFSLNGFEYLMTL--HDGG----------SVLFKS 612
            V HKTEF + A EA+++ VRQDV  + G K+ G SVLVFDF+PAGAIT+ NSP  +   APA  SST  A                                   G E  GE  G V  A+S+     CVV VH+R+NG K+LY N  L YSVKKEC+DGNLNSWVIPLPFGR VL+LT+K F+ +GFEY+MTL  HD G          +VL+KS
Sbjct:   17 VKHKTEFRSNADEALKLTVRQDVTRKAGFKKLGRSVLVFDFQPAGAITSTNSPN-NVMDAPAHESSTVMAE--------GALRAAAVDTAGRAGGDWSARAGPGEGEEGSGESTG-VTSASSV-----CVVFVHNRYNGAKQLYVNRALAYSVKKECTDGNLNSWVIPLPFGRAVLRLTSKLFASSGFEYVMTLDNHDRGGGXXXXXXRGTVLYKS 217
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5832.14280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP45_ECTSI4.130e-4547.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5832contigL-elsbetiae_contig5832:556..2343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_002440.1
Exons2
Model size618
Cds size618
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816628.5960639-CDS-L-elsbetiae_contig5832:555..9631622816628.5960639-CDS-L-elsbetiae_contig5832:555..963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5832 556..963 +
1691683696.5333831-CDS-L-elsbetiae_contig5832:555..9631691683696.5333831-CDS-L-elsbetiae_contig5832:555..963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5832 556..963 +
1622816628.6065214-CDS-L-elsbetiae_contig5832:2133..23431622816628.6065214-CDS-L-elsbetiae_contig5832:2133..2343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5832 2134..2343 +
1691683696.5442483-CDS-L-elsbetiae_contig5832:2133..23431691683696.5442483-CDS-L-elsbetiae_contig5832:2133..2343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5832 2134..2343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5832.14280.1prot_L-elsbetiae_contig5832.14280.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5832 556..2343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5832.14280.1

>prot_L-elsbetiae_contig5832.14280.1 ID=prot_L-elsbetiae_contig5832.14280.1|Name=mRNA_L-elsbetiae_contig5832.14280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
VIHKTEFVTEAGEAMRMVVRQDVKGRLGMKQFGLSVLVFDFEPAGAITTE
NSPTASGRLAPASGSSTADAAVAAVAGASAREAAAEGGGEGAEGATAAAA
AAAAAGGEAEGEERGTVVPATSLRRGQGCVVLVHDRWNGHKELYRNHRLV
YSVKKECSDGNLNSWVIPLPFGRVVLKLTNKFFSLNGFEYLMTLHDGGSV
LFKSN*
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mRNA from alignment at L-elsbetiae_contig5832:556..2343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5832.14280.1 ID=mRNA_L-elsbetiae_contig5832.14280.1|Name=mRNA_L-elsbetiae_contig5832.14280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1788bp|location=Sequence derived from alignment at L-elsbetiae_contig5832:556..2343+ (Laminarionema elsbetiae ELsaHSoW15)
GTCATTCACAAGACGGAGTTCGTTACCGAGGCCGGCGAAGCAATGAGAAT
GGTCGTGCGCCAGGACGTCAAGGGCAGACTCGGCATGAAGCAATTCGGCC
TGTCGGTCCTCGTCTTCGACTTCGAGCCCGCCGGCGCCATCACCACCGAG
AACAGCCCAACTGCGAGCGGGCGGCTAGCGCCGGCGAGTGGCAGCAGTAC
CGCCGATGCTGCCGTCGCGGCCGTGGCGGGCGCTTCTGCGCGAGAGGCGG
CGGCAGAAGGAGGAGGAGAGGGAGCGGAAGGGGCAACAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGGAGGAGAAGCCGAGGGAGAGGAGAGAGGGACTGT
CGTGCCCGCGACTAGTTTACGGAGGGGCCAAGGCTGTGTGGTCCTCGTTC
ACGACAGGGTCAGTTCAGCGGTATTTTTTTTCCCTCGCATGCATAGCCGG
TCGCCCCCGTGGGCTATTGTAGTGGGTCCCTCGTTAAGGCTGGACAACGT
ACTCGAAGTTCCGGGAATAATTAGACTGCTGGTTGTGATGTCTTCCTCTT
TGAAATCAGTACAATAAGGACACGTGTTTGACATCGCAAGTTTTAGGGGG
GTCGGGATCCGTTTGACTTGTCTTCAGCCCCATTTCCTTGAAGGGGGGGG
GGGGGGGGGGCTCCCGGTTTTTTTTGGGGGGGGGGTGTTTGGGGGGGGGT
TTGGGGGGGGGGTTGGTTTTTGTTTTTTGTGCAAACCNNNNNNNNNNGTA
TGTCTGGTAGGTTGGTTTGTTTTTTTGGGGTGTTGGGGGGGGGGGGGTTT
TGTTTGTGGGGGGGGGTTCTTTTTTTGGGGGGGGGGGGGGGGGGGGGGGG
GGCATCCTGGCTATCTTCGCGTGGCTGATGTTTAGGGCTGGTTCGCGGGG
CGTGTGTGCCTCTGTTCGTTCAGCAAAACCCGACCAGGTTGTTGACAGAA
AATGGGGCGCTTTGAGATGGTTTGGAAACACAGAGTTTCAAGATCGAAAG
CTATTATTGTGCACCGCTCCTGCTATGAGCAACAAAGAAAAACTCAAAAG
AAGGGAAAAGGTCCAGTGTTTACCGCCTCTTTTGTGACCGCGGCTGCTCC
GTCTAGTTGCACAGAAAACAAACACCGAAACGTGTATGGTAAGTGTAATA
CACCGAAACGTGTACATATTTAGCACACCTGGGCAAGGTGAACAGACGCA
AGAACAGATGGGACGAAAACACACAACACACATGCATGCGTACGTTGGCA
TATGCTGTGCTCTTTTTGGTACTGAGCTGCTTGCTGCAAGGTAGTTCGCG
ATTCCATCCCGGGTGGGGGGCATGCATGTGAAGCACGCACGGCGCTTCGC
ATAACCCCGATGCAATCCATCTGTTGTCGTGCCTCATCTTTGGTGGGAGT
GGGAACCCTCTGTTTCGCATACCACAAACATGCCTATCCGCTCGCCGCCG
TCTGCAAACCGTTTAATCTCCCCGTGCGTGCGCTGTCAACCCCCCCCCCC
CCTTCCACCCTTCCATCGTGCTGCACCATGTACATATATACGCCGAACGC
TTGCTTGCCCATTGCCGGCGACGAGCAGTGGAACGGGCACAAAGAGCTCT
ACCGCAACCACCGGCTGGTGTACAGCGTGAAGAAGGAGTGCTCTGACGGG
AACTTGAACTCATGGGTCATTCCGCTGCCGTTCGGGCGCGTCGTGCTCAA
GCTGACCAACAAGTTCTTCAGCTTGAACGGGTTCGAGTACCTCATGACCC
TCCACGATGGCGGCTCTGTGTTGTTCAAGAGCAACTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5832:556..2343+

>mRNA_L-elsbetiae_contig5832.14280.1 ID=mRNA_L-elsbetiae_contig5832.14280.1|Name=mRNA_L-elsbetiae_contig5832.14280.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig5832:556..2343+ (Laminarionema elsbetiae ELsaHSoW15)
GTCATTCACAAGACGGAGTTCGTTACCGAGGCCGGCGAAGCAATGAGAAT
GGTCGTGCGCCAGGACGTCAAGGGCAGACTCGGCATGAAGCAATTCGGCC
TGTCGGTCCTCGTCTTCGACTTCGAGCCCGCCGGCGCCATCACCACCGAG
AACAGCCCAACTGCGAGCGGGCGGCTAGCGCCGGCGAGTGGCAGCAGTAC
CGCCGATGCTGCCGTCGCGGCCGTGGCGGGCGCTTCTGCGCGAGAGGCGG
CGGCAGAAGGAGGAGGAGAGGGAGCGGAAGGGGCAACAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGGAGGAGAAGCCGAGGGAGAGGAGAGAGGGACTGT
CGTGCCCGCGACTAGTTTACGGAGGGGCCAAGGCTGTGTGGTCCTCGTTC
ACGACAGGGTCATTCACAAGACGGAGTTCGTTACCGAGGCCGGCGAAGCA
ATGAGAATGGTCGTGCGCCAGGACGTCAAGGGCAGACTCGGCATGAAGCA
ATTCGGCCTGTCGGTCCTCGTCTTCGACTTCGAGCCCGCCGGCGCCATCA
CCACCGAGAACAGCCCAACTGCGAGCGGGCGGCTAGCGCCGGCGAGTGGC
AGCAGTACCGCCGATGCTGCCGTCGCGGCCGTGGCGGGCGCTTCTGCGCG
AGAGGCGGCGGCAGAAGGAGGAGGAGAGGGAGCGGAAGGGGCAACAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGGAGGAGAAGCCGAGGGAGAGGAGAGA
GGGACTGTCGTGCCCGCGACTAGTTTACGGAGGGGCCAAGGCTGTGTGGT
CCTCGTTCACGACAGGTGGAACGGGCACAAAGAGCTCTACCGCAACCACC
GGCTGGTGTACAGCGTGAAGAAGGAGTGCTCTGACGGGAACTTGAACTCA
TGGGTCATTCCGCTGCCGTTCGGGCGCGTCGTGCTCAAGCTGACCAACAA
GTTCTTCAGCTTGAACGGGTTCGAGTACCTCATGACCCTCCACGATGGCG
GCTCTGTGTTGTTCAAGAGCAACTAATGGAACGGGCACAAAGAGCTCTAC
CGCAACCACCGGCTGGTGTACAGCGTGAAGAAGGAGTGCTCTGACGGGAA
CTTGAACTCATGGGTCATTCCGCTGCCGTTCGGGCGCGTCGTGCTCAAGC
TGACCAACAAGTTCTTCAGCTTGAACGGGTTCGAGTACCTCATGACCCTC
CACGATGGCGGCTCTGTGTTGTTCAAGAGCAACTAA
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