mRNA_L-elsbetiae_contig5831.14279.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5831.14279.1
Unique NamemRNA_L-elsbetiae_contig5831.14279.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5831.14279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5831contigL-elsbetiae_contig5831:10500..11439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size400
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816628.502632-CDS-L-elsbetiae_contig5831:10500..106451622816628.502632-CDS-L-elsbetiae_contig5831:10500..10645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5831 10501..10645 -
1691683696.4896228-CDS-L-elsbetiae_contig5831:10500..106451691683696.4896228-CDS-L-elsbetiae_contig5831:10500..10645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5831 10501..10645 -
1622816628.5151463-CDS-L-elsbetiae_contig5831:11185..114391622816628.5151463-CDS-L-elsbetiae_contig5831:11185..11439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5831 11186..11439 -
1691683696.5046365-CDS-L-elsbetiae_contig5831:11185..114391691683696.5046365-CDS-L-elsbetiae_contig5831:11185..11439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5831 11186..11439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5831.14279.1prot_L-elsbetiae_contig5831.14279.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5831 10501..11439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5831.14279.1

>prot_L-elsbetiae_contig5831.14279.1 ID=prot_L-elsbetiae_contig5831.14279.1|Name=mRNA_L-elsbetiae_contig5831.14279.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
GLVRGRSPAPTGAWCMTSEGEHRLPWWTHRSPGPSLGRLLETKGAVATAP
PGAAGASSAVATAAKTGGGREERQPRESFRDHCPGSRASSPRANTAKMPE
ALVPARSAVCQRRLSRRPTFRETHNLRGRSPPP
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mRNA from alignment at L-elsbetiae_contig5831:10500..11439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5831.14279.1 ID=mRNA_L-elsbetiae_contig5831.14279.1|Name=mRNA_L-elsbetiae_contig5831.14279.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=940bp|location=Sequence derived from alignment at L-elsbetiae_contig5831:10500..11439- (Laminarionema elsbetiae ELsaHSoW15)
GGCCTGGTTCGCGGTCGTTCGCCAGCCCCGACGGGCGCGTGGTGCATGAC
ATCGGAGGGGGAACATCGTCTGCCTTGGTGGACGCATCGGTCTCCGGGTC
CGTCTCTGGGTCGATTGCTGGAGACGAAGGGAGCGGTCGCCACGGCGCCG
CCCGGGGCAGCAGGGGCTTCGTCGGCGGTGGCGACGGCAGCAAAGACAGG
CGGGGGCCGCGAGGAGAGGCAGCCAAGGGAAAGTTTTCGAGACCATTGTC
CTGGGTAAGAGGGAGAACACCGATGGATGGATTTGCGGTTGAGTTCATGC
TTTTGCAACGACGGTGCTGTTGGCCTTTCTCGCCACCGCCGCCGCCGCCG
CCGCCGCCGAGTAACGCCGCCATCTTTGTCCGCGCCCTTCCAAGCGCAAC
AACAGTAACGGCGAAAGTGGAGGAAAGGCTGATGCCTGCGTTGTGCAGAG
TCTGGTGGTTTCGTGTGATGTGCGGGTTGACTTCATTCAGGCCGAGCTCC
GATTCCTTGCCCAAGCGGTCGATTCTTCCAAATGCGCCACACCACACGGT
GCTGTTTTTTGTGCACTCCCCGCAGCACGCACGCCTCGACTTAGGGGGCG
AGAACGCTAGCCAAGCGTGCACGGCCAGTACCAGCCCACCGGGACGCACC
TCGCGGTATATATGCGACAATTCTCTCACCGTTCCAACGGCGAGCCTATC
TTTCTACCTACTCGTTCCTGGTACATCGTCCGCTACCCGACCAACCCCCC
CCCCCCCTTTACCGCGAAACCCTGTCGCGGTGTGCTCCCCACAGGTCTCG
GGCCAGCTCCCCGAGGGCGAACACCGCGAAAATGCCGGAAGCGCTGGTGC
CAGCGCGGTCAGCGGTGTGTCAGAGAAGACTCTCGAGACGTCCGACATTT
CGCGAGACCCACAACCTGCGGGGCCGATCCCCGCCTCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5831:10500..11439-

>mRNA_L-elsbetiae_contig5831.14279.1 ID=mRNA_L-elsbetiae_contig5831.14279.1|Name=mRNA_L-elsbetiae_contig5831.14279.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig5831:10500..11439- (Laminarionema elsbetiae ELsaHSoW15)
GGCCTGGTTCGCGGTCGTTCGCCAGCCCCGACGGGCGCGTGGTGCATGAC
ATCGGAGGGGGAACATCGTCTGCCTTGGTGGACGCATCGGTCTCCGGGTC
CGTCTCTGGGTCGATTGCTGGAGACGAAGGGAGCGGTCGCCACGGCGCCG
CCCGGGGCAGCAGGGGCTTCGTCGGCGGTGGCGACGGCAGCAAAGACAGG
CGGGGGCCGCGAGGAGAGGCAGCCAAGGGAAAGTTTTCGAGACCATTGTC
CTGGGGCCTGGTTCGCGGTCGTTCGCCAGCCCCGACGGGCGCGTGGTGCA
TGACATCGGAGGGGGAACATCGTCTGCCTTGGTGGACGCATCGGTCTCCG
GGTCCGTCTCTGGGTCGATTGCTGGAGACGAAGGGAGCGGTCGCCACGGC
GCCGCCCGGGGCAGCAGGGGCTTCGTCGGCGGTGGCGACGGCAGCAAAGA
CAGGCGGGGGCCGCGAGGAGAGGCAGCCAAGGGAAAGTTTTCGAGACCAT
TGTCCTGGGTCTCGGGCCAGCTCCCCGAGGGCGAACACCGCGAAAATGCC
GGAAGCGCTGGTGCCAGCGCGGTCAGCGGTGTGTCAGAGAAGACTCTCGA
GACGTCCGACATTTCGCGAGACCCACAACCTGCGGGGCCGATCCCCGCCT
CCGGTCTCGGGCCAGCTCCCCGAGGGCGAACACCGCGAAAATGCCGGAAG
CGCTGGTGCCAGCGCGGTCAGCGGTGTGTCAGAGAAGACTCTCGAGACGT
CCGACATTTCGCGAGACCCACAACCTGCGGGGCCGATCCCCGCCTCCG
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