mRNA_L-elsbetiae_contig5831.14278.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5831.14278.1
Unique NamemRNA_L-elsbetiae_contig5831.14278.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5831.14278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5831contigL-elsbetiae_contig5831:9294..10264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816628.4565926-CDS-L-elsbetiae_contig5831:9293..95681622816628.4565926-CDS-L-elsbetiae_contig5831:9293..9568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5831 9294..9568 -
1691683696.4689705-CDS-L-elsbetiae_contig5831:9293..95681691683696.4689705-CDS-L-elsbetiae_contig5831:9293..9568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5831 9294..9568 -
1622816628.4687717-CDS-L-elsbetiae_contig5831:10140..102641622816628.4687717-CDS-L-elsbetiae_contig5831:10140..10264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5831 10141..10264 -
1691683696.4789424-CDS-L-elsbetiae_contig5831:10140..102641691683696.4789424-CDS-L-elsbetiae_contig5831:10140..10264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5831 10141..10264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5831.14278.1prot_L-elsbetiae_contig5831.14278.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5831 9294..10264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5831.14278.1

>prot_L-elsbetiae_contig5831.14278.1 ID=prot_L-elsbetiae_contig5831.14278.1|Name=mRNA_L-elsbetiae_contig5831.14278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
SSGAQSSRPVSGVSPPALDRLSSMSESFSTVSDATSAKGSEVSFGDSISL
LSAWGAKANDQTPPGSPQRNPLEDRSATPDRSNDGTLLKGGGEAARIVNA
DSTPNRNLRFSSAYRKVVRKTASASRVVARAAG
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mRNA from alignment at L-elsbetiae_contig5831:9294..10264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5831.14278.1 ID=mRNA_L-elsbetiae_contig5831.14278.1|Name=mRNA_L-elsbetiae_contig5831.14278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=971bp|location=Sequence derived from alignment at L-elsbetiae_contig5831:9294..10264- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCGGGGCCCAGAGCAGCAGACCCGTTTCCGGGGTCTCCCCGCCGGC
GTTAGACCGCCTGTCAAGCATGAGCGAGAGCTTCAGCACGGTGTCCGACG
CGACAAGCGCCAAGGGCTCAGAAGGTGCCAAGTACTGCTTGCTGTGTGTG
GCAATGGGTGAAAAGACAGCCCGAACCACCCCAAAGCGCGCGACTCCTGT
CTTATTGAGCTGACAAGCGTGCTCCTTGCTTGCACAACCCCAGCGCTGCC
ACTGTGTCCGCTGCACTGCACTGCACCCTCACCCCTGCCGTGTTTCGTTC
ATGAACTGCGTGTGACTGTCAACACTCGGAAGTCAATCTGTTGGGCCCGG
CGGGGGGGGGGAAACACGGACACCGTCTGTAGGATGAACGCATCGAGCGG
CGTGCTTACACAGCTGTTGCCTTCCACACGCTTCTTTTTTCGGGGCTCGT
TGAAGACCCATGCACCTGAGCCGCCGTGGAACGGGAAAGGAGCTAAGCTT
CCATCATAACCCCCGAAACACAGCAACCAATCTCGATTCGCTCGGAACGG
TAGTCAATCGGTTGCTTCTTCGACAACGCTGCTCCTTGCGCACACCACAT
GCTACCACGGATTATCGTCCCAGCCGCCTGACCCCCCCTCCACACTACCG
CCGTACCCTCCTTTCCCCCCTCCTGTACTTGTTATCCCTCCTCCAGTGTC
GTTCGGAGACAGCATTAGCCTCCTAAGCGCATGGGGCGCCAAGGCGAACG
ACCAAACGCCTCCGGGGTCGCCGCAGAGAAATCCGCTGGAGGATCGGTCT
GCCACCCCCGACCGGAGCAACGACGGCACCCTGCTCAAGGGGGGCGGCGA
GGCCGCGCGGATCGTCAACGCCGACAGCACGCCGAACAGGAACCTCCGCT
TCTCCTCCGCGTACCGCAAAGTCGTGCGGAAGACGGCGTCGGCCTCCAGG
GTGGTGGCAAGGGCGGCGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5831:9294..10264-

>mRNA_L-elsbetiae_contig5831.14278.1 ID=mRNA_L-elsbetiae_contig5831.14278.1|Name=mRNA_L-elsbetiae_contig5831.14278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig5831:9294..10264- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCGGGGCCCAGAGCAGCAGACCCGTTTCCGGGGTCTCCCCGCCGGC
GTTAGACCGCCTGTCAAGCATGAGCGAGAGCTTCAGCACGGTGTCCGACG
CGACAAGCGCCAAGGGCTCAGAAGAGCAGCGGGGCCCAGAGCAGCAGACC
CGTTTCCGGGGTCTCCCCGCCGGCGTTAGACCGCCTGTCAAGCATGAGCG
AGAGCTTCAGCACGGTGTCCGACGCGACAAGCGCCAAGGGCTCAGAAGTG
TCGTTCGGAGACAGCATTAGCCTCCTAAGCGCATGGGGCGCCAAGGCGAA
CGACCAAACGCCTCCGGGGTCGCCGCAGAGAAATCCGCTGGAGGATCGGT
CTGCCACCCCCGACCGGAGCAACGACGGCACCCTGCTCAAGGGGGGCGGC
GAGGCCGCGCGGATCGTCAACGCCGACAGCACGCCGAACAGGAACCTCCG
CTTCTCCTCCGCGTACCGCAAAGTCGTGCGGAAGACGGCGTCGGCCTCCA
GGGTGGTGGCAAGGGCGGCGGGCTGTCGTTCGGAGACAGCATTAGCCTCC
TAAGCGCATGGGGCGCCAAGGCGAACGACCAAACGCCTCCGGGGTCGCCG
CAGAGAAATCCGCTGGAGGATCGGTCTGCCACCCCCGACCGGAGCAACGA
CGGCACCCTGCTCAAGGGGGGCGGCGAGGCCGCGCGGATCGTCAACGCCG
ACAGCACGCCGAACAGGAACCTCCGCTTCTCCTCCGCGTACCGCAAAGTC
GTGCGGAAGACGGCGTCGGCCTCCAGGGTGGTGGCAAGGGCGGCGGGC
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