mRNA_L-elsbetiae_contig5831.14277.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5831.14277.1
Unique NamemRNA_L-elsbetiae_contig5831.14277.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5831.14277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5831contigL-elsbetiae_contig5831:5222..5835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816628.5527499-CDS-L-elsbetiae_contig5831:5221..55511622816628.5527499-CDS-L-elsbetiae_contig5831:5221..5551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5831 5222..5551 +
1691683696.5147705-CDS-L-elsbetiae_contig5831:5221..55511691683696.5147705-CDS-L-elsbetiae_contig5831:5221..5551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5831 5222..5551 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816628.5670369-UTR-L-elsbetiae_contig5831:5551..58351622816628.5670369-UTR-L-elsbetiae_contig5831:5551..5835Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5831 5552..5835 +
1691683696.524119-UTR-L-elsbetiae_contig5831:5551..58351691683696.524119-UTR-L-elsbetiae_contig5831:5551..5835Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5831 5552..5835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5831.14277.1prot_L-elsbetiae_contig5831.14277.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5831 5222..5551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5831.14277.1

>prot_L-elsbetiae_contig5831.14277.1 ID=prot_L-elsbetiae_contig5831.14277.1|Name=mRNA_L-elsbetiae_contig5831.14277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
LHIRLSKQDTAAFGRNIEHISNSPAARPSRGKHNTSNPGRWTQVTNHAPS
PDGSERRRPRASAHALEKGSRCRSVSYPPVSSFREHNERLCKKNATCQMT
TILRTATSK*
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mRNA from alignment at L-elsbetiae_contig5831:5222..5835+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5831.14277.1 ID=mRNA_L-elsbetiae_contig5831.14277.1|Name=mRNA_L-elsbetiae_contig5831.14277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=614bp|location=Sequence derived from alignment at L-elsbetiae_contig5831:5222..5835+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCACATTCGGCTGTCAAAGCAAGACACTGCCGCATTTGGGAGAAACAT
AGAGCACATAAGCAACAGCCCGGCAGCCAGACCGTCCCGCGGAAAACACA
ACACGTCCAACCCCGGTCGGTGGACTCAAGTCACTAACCATGCACCATCT
CCAGACGGTTCAGAAAGAAGAAGACCTCGTGCTTCTGCGCATGCGTTGGA
GAAAGGCTCACGGTGTCGGAGCGTCTCATACCCCCCTGTATCCTCTTTCA
GGGAACATAACGAACGGTTGTGCAAGAAGAACGCCACCTGTCAAATGACA
ACCATTTTGAGGACAGCTACATCTAAATAGATAGAAAAAGCGATCCGTAC
ACCCCGCCGACCATCTCCCCTACCCGCGGATCTAACAAGATCCCGACCGC
CACCGGCGTAGCCACCGGCGGGATCGTCTGTGTGGGGTTTGGTGCGTGCG
ACGCTTGGAGTTGCGCGCGCTCCAACCTTGAGACCGCCCTGGGCCCTACT
GTGGTTCCACCCAGCCAACGGCCTTGAGACGCCCCCCAGACATTTCGAGA
CACGCGGCCGGTTGTTCTTCCGCGCGAATGACTACGATTTTTTCGAAGAA
ATCTCCACGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5831:5222..5835+

>mRNA_L-elsbetiae_contig5831.14277.1 ID=mRNA_L-elsbetiae_contig5831.14277.1|Name=mRNA_L-elsbetiae_contig5831.14277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig5831:5222..5835+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCACATTCGGCTGTCAAAGCAAGACACTGCCGCATTTGGGAGAAACAT
AGAGCACATAAGCAACAGCCCGGCAGCCAGACCGTCCCGCGGAAAACACA
ACACGTCCAACCCCGGTCGGTGGACTCAAGTCACTAACCATGCACCATCT
CCAGACGGTTCAGAAAGAAGAAGACCTCGTGCTTCTGCGCATGCGTTGGA
GAAAGGCTCACGGTGTCGGAGCGTCTCATACCCCCCTGTATCCTCTTTCA
GGGAACATAACGAACGGTTGTGCAAGAAGAACGCCACCTGTCAAATGACA
ACCATTTTGAGGACAGCTACATCTAAATAGCTGCACATTCGGCTGTCAAA
GCAAGACACTGCCGCATTTGGGAGAAACATAGAGCACATAAGCAACAGCC
CGGCAGCCAGACCGTCCCGCGGAAAACACAACACGTCCAACCCCGGTCGG
TGGACTCAAGTCACTAACCATGCACCATCTCCAGACGGTTCAGAAAGAAG
AAGACCTCGTGCTTCTGCGCATGCGTTGGAGAAAGGCTCACGGTGTCGGA
GCGTCTCATACCCCCCTGTATCCTCTTTCAGGGAACATAACGAACGGTTG
TGCAAGAAGAACGCCACCTGTCAAATGACAACCATTTTGAGGACAGCTAC
ATCTAAATAG
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