mRNA_L-elsbetiae_contig5830.14275.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: D7FXJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ3_ECTSI) HSP 1 Score: 400 bits (1027), Expect = 2.850e-131 Identity = 221/451 (49.00%), Postives = 273/451 (60.53%), Query Frame = 1 Query: 25 LGSWAGQASGWEDCTISPDDEWRRATERTPALRMRYEFPRRYTCEMEIASYEAASYFFDSRCTGDGFFFPERILSCLEGRRVVFMGDSLSIQQADSLVGMLDWHPYWIVSTNPRNGGKGDADGKPYRLQVRDCWRYPAEEKLEDLELCWDLYERDFPLAPATSAPA--------------------TPAEAGP--GSTPA----------------------------------EPSVEARRDESEGAPGQGETSVHARDYSFAFGNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQGTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCP 1209 LG G+ASGW +C + P D W+ AT+ TPALRMRY++ RRYTC E AS+ AASY F+S CT F P ++SCL+GRRV+F+GDSLS QQ DSL+GML WHP W+ NPRN DGK Y V DCW +P+ ++ +E C+D DFP P +PA+ P G T A E E R+E E A + E SVH R S G +W +RAV DFNETRASD+FVVNFG HY + P+ D +FK VFPILDEMA +G+ ATVVWREIAP HFP+VN S++ F+ LE + ++ A CTGTPP V+ RN WVE+Y+ D GL D +KLLRIY+MS+PRG+AHHTCH A PSTM+Q + + +DCRHWS TGVVEEWNALMLNHLCP Sbjct: 35 LGVIVGKASGWVECLMPPQDAWKAATDTTPALRMRYDYERRYTCRDEKASFLAASYVFNSTCTARRFSGPPDVVSCLKGRRVIFLGDSLSNQQGDSLLGMLGWHPDWMTKGNPRNAKVITEDGKRYYTLV-DCW-HPS---IKGVERCYDYSTSDFPGPTTLGQPGDGPSGEATTQSRKNMARSTTSPAKRRPPLGGTKADSTKSVXXXXXXXXXXXXRKMQAREWEDGQEAAEEAEAEGYREEVE-AVDESEISVHMRMLSKPSGEHWLTRAVSDFNETRASDIFVVNFGGHYHDFPEEDDSFKRDVFPILDEMAVLGEKATVVWREIAPTHFPAVNGSFDAFDGLESKDRK-ASCTGTPPEVFDRNVWVENYVRDNGLEDRIKLLRIYDMSMPRGAAHHTCHFAPPSTMNQSEAAIDGRGVSGPLDCRHWSETGVVEEWNALMLNHLCP 478
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: A0A6H5JEC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEC7_9PHAE) HSP 1 Score: 397 bits (1020), Expect = 2.330e-130 Identity = 217/421 (51.54%), Postives = 262/421 (62.23%), Query Frame = 1 Query: 52 GWEDCTISPDDEWRRATERTPALRMRYEFPRRYTCEM-EIASYEAASYFFDSRCTGDGFFFPERILSCLEGRRVVFMGDSLSIQQADSLVGMLDWHPYWIVSTNPRNGGKG-DADGKPYRLQVRDCWRYPAEEKLEDLELCWDLYERDFPLAPATSAPATPAEAGPGSTP---AEPSVEARRDES------EGAPGQGE----------------------TSVHARDYSFAFGNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQGTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCPAA 1215 GW +C+ISP DEW+ ATE T A+RMR E+ R YTC E AS+ AA+Y+FDS C FF+P + CL GRRV+F+GDSLS QQ DSLVGML WHP W+ PRN + DG Y V DCW +P + +E C+D+Y+ DFP +P P+ GST A S E + D EG G E TSVH R S A +W RA++D+NETRASDV VVNFG HY TP+G+ +FK V ILD+MAEIG+TATVVWREIAP HFP N ++E+F +E + ACCTGTP +V RN WVEDY+ D GL+D VKLLRIY+MS+PRG+AHHTCH+A PSTMDQ C DCRHWS TGVVEEWNAL+LNHLCP A Sbjct: 54 GWNECSISPQDEWKEATEDTLAMRMRAEYERMYTCTTREDASFMAANYYFDSPCLAKRFFYPTDVRECLRGRRVIFLGDSLSNQQGDSLVGMLGWHPEWMPRGGPRNRKRAVRKDGTRYFTLV-DCW-HPPGGSIPGIERCYDVYDTDFPFEGNHRSPGKPSLEIHGSTTDDGAFASTEGKHDRRTRRRSLEGDEGGVEXXXXXXXXXXXXXXXXTKANQTTSVHVRMTSTADDRHWLRRALRDYNETRASDVVVVNFGPHYRSTPEGEESFKRDVSSILDDMAEIGETATVVWREIAPTHFPGENGTYESF--VELDLGNNACCTGTPVKVLDRNAWVEDYVRDNGLSDRVKLLRIYDMSVPRGAAHHTCHLAPPSTMDQAGAESDYCHSVYATDCRHWSETGVVEEWNALLLNHLCPMA 470
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: A0A6H5KLA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA9_9PHAE) HSP 1 Score: 354 bits (908), Expect = 3.040e-113 Identity = 212/473 (44.82%), Postives = 261/473 (55.18%), Query Frame = 1 Query: 25 LGSWAGQASGWEDCTISPDDEWRRATERTPALRMRYEFPRRYTCEMEIASYEAA---SYFFDSRCTGDGFFFPERILSCLE-------------------GRRVVFMGDSLSIQQADSLVGMLDWHPYWIVSTNPRNGGKGDADGKPYRLQVRDCWRYPAEEKLEDLELCWDLYERDFPLAPATSAPATPAEAG--------------PGSTPAEPSVEARRDES------EG---------------------------APGQGET---------SVHARDYSFAFGNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQGTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCP 1209 LG G+ASGW++C +SP D W+ AT+ T ALRMRYE+ RRYTC E + + S R + D P +LSCL+ GRRV+F+GDSLS QQ DSL+GML WHP W+ N RN DGK Y V DCW +P+ + +E C+D DFP P T +G P ST S+ R+ +S EG A G GE SVH R S G +W +RAV DFNETRASD+FVVNFG HY + P+ D +FK VFPILDEMA +G+ ATVVWREIAP HFP+VN S++ F+ LE + ++ A CTGTPP V+ RN WVE+YL GL D + LLRIY+MS+PRG+AHHTCH A PS M+Q + +DCRHWS TGVVEEWN LMLNHLCP Sbjct: 27 LGVVVGKASGWKECLVSPQDAWKAATDTTAALRMRYEYERRYTCRDEKGALQGPTPNSLAHARRKSDDS---PPLVLSCLDANSLKRLNKESTSMQVCLKGRRVIFLGDSLSNQQGDSLLGMLGWHPDWMTKENLRNAKVITEDGKRYYTLV-DCW-HPS---ISGVERCYDYSTSDFP-GPTTFGQPGDGPSGEARKQSRKKVFRSTPSSTKRSTSLGGRKADSTKSASTEGDNSRNKHGRKLQPREWEDGQEAAEEAEAEGYGEEVEAVDENEISVHMRMLSKPSGEHWLTRAVSDFNETRASDIFVVNFGGHYHDFPEEDDSFKRDVFPILDEMAVLGEKATVVWREIAPTHFPAVNGSFDAFDCLESKDRK-ASCTGTPPEVFDRNVWVENYLRTNGLEDRIHLLRIYDMSVPRGAAHHTCHFAPPSPMNQSEAASDGGGASGPLDCRHWSETGVVEEWNTLMLNHLCP 489
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: D7FL04_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL04_ECTSI) HSP 1 Score: 351 bits (900), Expect = 7.130e-112 Identity = 203/479 (42.38%), Postives = 262/479 (54.70%), Query Frame = 1 Query: 25 LGSWAGQASGWEDCTISPDDEWRRATERTP--ALRMRYEFPRRYTCEMEIASYEAASYFFDSRCTGDGFFFPERILSCLEGRRVVFMGDSLSIQQADSLVGMLDWHPYWIVSTNPRNGGKGDADGKPYRLQVRDCWRYPAEEKLEDLELCWDLYERDFPLAPATSAP---------------ATPAEAGPGSTPAEPSVEARRDESEGAPGQG-----------------------------------------------------------ETSVHARDYSFAFGNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQ--------GTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCP 1209 LG G+ASGW++C++SP+D W A RT ALRMR+++ RRYTC+ + ASY AASY+FDS CT F P + SCL+GRRV+F+GDSLS QQ DSL+GML WHP W+ PRN DG + V DC+ +P+ L ++ C+D FP A+ P AT +E S + + +++G G G E SVH R S G +W +A DFNETRASDVFVVNFG HY + P+ D FK + P+L +MA +G+ ATV+WREIAP HFP+ N S++++ L+ + C TGTPP+V+ RN+WVE+Y+ D GL D +KLLRIY+MS+PRG+AHHTCH A PSTM Q G S P+ DCRHWS TGVVEEWN LMLNHLCP Sbjct: 37 LGVVVGKASGWKECSVSPEDRWSPAPSRTSTAALRMRFDYERRYTCDSKHASYLAASYYFDSPCTARRFPSPPDVTSCLKGRRVIFLGDSLSNQQGDSLMGMLGWHPDWMTKGAPRNSKLDIEDGSKHFTLV-DCY-HPS---LGGIQRCYDYSTSAFPPPAASDHPVSREKSRKKKSIRAGATSSEKVKLSMRGRTTTAIKTAQTKGTRGLGHKRRKSQRHGRWWXXGEGHGQEEEEEVEXXXXXXXXXXXXXXXXXXXXXYGETFDVDGNEISVHMRMLSRPSGEHWLLKAASDFNETRASDVFVVNFGGHYHDIPEDDEEFKTDMIPVLQDMAVLGQNATVIWREIAPTHFPAANGSYDSYADLDAKDLTPRC-TGTPPKVFDRNEWVENYVRDNGLEDRIKLLRIYDMSVPRGAAHHTCHFAPPSTMKQPRVKNDGRGAASGPI-------DCRHWSETGVVEEWNTLMLNHLCP 502
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: D7G6G2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G2_ECTSI) HSP 1 Score: 258 bits (659), Expect = 1.560e-77 Identity = 124/198 (62.63%), Postives = 146/198 (73.74%), Query Frame = 1 Query: 616 TSVHARDYSFAFGNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQGTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCP 1209 TSVH R S A +W RA++D+NETRASDV VVNFGAHY TP+G+ +FK V ILD+MAEIG+TATVVWREIAP HFP+ N ++E F +E + ACCTGTP +V RN WVEDYL + GL+D VKLLRIY+MS+ RG+AHHTCH+A PSTMDQ C DCRHWS TGVVEEWNAL+LN LCP Sbjct: 184 TSVHVRMTSAADDQHWLRRALRDYNETRASDVVVVNFGAHYRSTPEGEESFKRDVSSILDDMAEIGETATVVWREIAPTHFPAENGTYEAF--VELDLGNTACCTGTPVKVLDRNAWVEDYLRENGLSDRVKLLRIYDMSVSRGAAHHTCHLAPPSTMDQTGAESGNCHSSYATDCRHWSETGVVEEWNALLLNQLCP 379
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: D8LML8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML8_ECTSI) HSP 1 Score: 251 bits (641), Expect = 1.800e-77 Identity = 119/190 (62.63%), Postives = 141/190 (74.21%), Query Frame = 1 Query: 640 SFAFGNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQGTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCP 1209 S A +W RA++D+NETRASDV VVNFGAHY TP+G+ +FK V ILD+MAEIG+TATVVWREIAP HFP+ N ++E F +E + ACCTGTP + RN WVEDYL + GL+D VKLLRIY+MS+PRG+AHHTCH+A PSTMDQ C DCRHWS TGVVEEWNAL+LN LCP Sbjct: 3 SAADDQHWLRRALRDYNETRASDVVVVNFGAHYRSTPEGEESFKRDVSSILDDMAEIGETATVVWREIAPTHFPAENGTYEAF--VELDLGNTACCTGTPVKFLDRNAWVEDYLRENGLSDRVKLLRIYDMSVPRGAAHHTCHLAPPSTMDQTGAESGNCHSSYATDCRHWSETGVVEEWNALLLNQLCP 190
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: D7FKZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ2_ECTSI) HSP 1 Score: 238 bits (607), Expect = 2.570e-72 Identity = 110/194 (56.70%), Postives = 137/194 (70.62%), Query Frame = 1 Query: 652 GNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQ--------GTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCP 1209 G +W +A DFNETRASDVFVVNFG HY + P+ D FK + P+L +MA +G+ ATV+WREIAP HFP+ N S++++ L+ + C TGTPP+V+ RN+WVE+Y+ D GL D +KLLRIY+MS+PRG+AHHTCH A PSTM Q G S P+ DCRHWS TGVVEEWN LMLNHLCP Sbjct: 9 GEHWLLKAASDFNETRASDVFVVNFGGHYHDIPEDDEEFKTDMIPVLQDMAVLGQNATVIWREIAPTHFPAANGSYDSYADLDAKDLTPRC-TGTPPKVFDRNEWVENYVRDNGLEDRIKLLRIYDMSVPRGAAHHTCHFAPPSTMKQPRMRNDGRGAASGPI-------DCRHWSETGVVEEWNTLMLNHLCP 194
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: D7FKZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ3_ECTSI) HSP 1 Score: 144 bits (362), Expect = 1.400e-36 Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = 1 Query: 25 LGSWAGQASGWEDCTISPDDEWRRATERTP--ALRMRYEFPRRYTCEMEIASYEAASYFFDSRCTGDGFFFPERILSCLEGRRVVFMGDSLSIQQADSLVGMLDWHPYWIVSTNPRN 369 LG G+ASGW++C++SP+D W A RT ALRMR+++ RRYTC+ + ASY AASYFFDS CT F FP + SCL+GRRV+F+GDSLS QQ DSL+GML WHP W+ PRN Sbjct: 47 LGVVVGKASGWKECSVSPEDRWSPAPSRTSTAALRMRFDYERRYTCDSKHASYLAASYFFDSPCTARRFPFPPDVTSCLKGRRVIFLGDSLSNQQGDSLMGMLGWHPDWMTKGAPRN 163 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5830.14275.1 >prot_L-elsbetiae_contig5830.14275.1 ID=prot_L-elsbetiae_contig5830.14275.1|Name=mRNA_L-elsbetiae_contig5830.14275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=365bp MRYEFPRRYTCEMEIASYEAASYFFDSRCTGDGFFFPERILSCLEGRRVVback to top mRNA from alignment at L-elsbetiae_contig5830:44..8945- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5830.14275.1 ID=mRNA_L-elsbetiae_contig5830.14275.1|Name=mRNA_L-elsbetiae_contig5830.14275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8902bp|location=Sequence derived from alignment at L-elsbetiae_contig5830:44..8945- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5830:44..8945- >mRNA_L-elsbetiae_contig5830.14275.1 ID=mRNA_L-elsbetiae_contig5830.14275.1|Name=mRNA_L-elsbetiae_contig5830.14275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2190bp|location=Sequence derived from alignment at L-elsbetiae_contig5830:44..8945- (Laminarionema elsbetiae ELsaHSoW15)back to top |