mRNA_L-elsbetiae_contig5827.14266.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5827.14266.1
Unique NamemRNA_L-elsbetiae_contig5827.14266.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5827.14266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5827contigL-elsbetiae_contig5827:2630..3200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size571
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5827.14266.1prot_L-elsbetiae_contig5827.14266.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5827 2745..3134 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.9584432-UTR-L-elsbetiae_contig5827:2629..27441622816626.9584432-UTR-L-elsbetiae_contig5827:2629..2744Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5827 2630..2744 +
1691683695.3765743-UTR-L-elsbetiae_contig5827:2629..27441691683695.3765743-UTR-L-elsbetiae_contig5827:2629..2744Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5827 2630..2744 +
1622816626.9787517-UTR-L-elsbetiae_contig5827:3134..32001622816626.9787517-UTR-L-elsbetiae_contig5827:3134..3200Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5827 3135..3200 +
1691683695.3969147-UTR-L-elsbetiae_contig5827:3134..32001691683695.3969147-UTR-L-elsbetiae_contig5827:3134..3200Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5827 3135..3200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.968541-CDS-L-elsbetiae_contig5827:2744..31341622816626.968541-CDS-L-elsbetiae_contig5827:2744..3134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5827 2745..3134 +
1691683695.3867576-CDS-L-elsbetiae_contig5827:2744..31341691683695.3867576-CDS-L-elsbetiae_contig5827:2744..3134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5827 2745..3134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5827.14266.1

>prot_L-elsbetiae_contig5827.14266.1 ID=prot_L-elsbetiae_contig5827.14266.1|Name=mRNA_L-elsbetiae_contig5827.14266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MGQEWFGRGSLGQAARGVTINKSELQMRWRTCDPTHPSVSSPFSPCDRSE
RAKRWSAPWVWSRARVDRTVLRNAKLVGMCVGKRKSAQHTCASTVRLSWI
CPVEKVRNQDSMKRASNMGPPTQKLILYY*
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mRNA from alignment at L-elsbetiae_contig5827:2630..3200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5827.14266.1 ID=mRNA_L-elsbetiae_contig5827.14266.1|Name=mRNA_L-elsbetiae_contig5827.14266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=571bp|location=Sequence derived from alignment at L-elsbetiae_contig5827:2630..3200+ (Laminarionema elsbetiae ELsaHSoW15)
GTCACTTTCGACAAGTCAAAGGCTCAGGTTCGCTTTTTATATCTGAGAGT
TGGAGGGGTCCCGCAGCGGAAAAGTGCAGTCGAGGTGTGTATTTAGGCCC
CAAAAAAACGCGGGGATGGGACAGGAATGGTTTGGTCGAGGTTCGTTGGG
GCAGGCAGCGCGCGGGGTGACAATAAATAAGTCAGAGCTGCAGATGAGGT
GGAGGACGTGTGACCCGACCCATCCTTCCGTGTCATCTCCATTCAGCCCG
TGTGATAGAAGTGAGCGTGCGAAGCGGTGGAGCGCTCCTTGGGTGTGGTC
GAGGGCACGCGTCGATCGCACCGTTTTGCGAAACGCGAAACTAGTAGGTA
TGTGTGTAGGTAAACGAAAAAGCGCGCAGCACACGTGTGCGTCAACGGTT
CGATTGTCTTGGATCTGTCCTGTGGAGAAGGTACGAAATCAAGATTCGAT
GAAAAGGGCAAGTAATATGGGACCGCCTACGCAGAAGTTAATTTTATACT
ACTAACCCTAACCCTAACCCTAACCCTAACCCCAACCACCGACCCCCCCA
AACGGTTTCCATACTGTATCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5827:2630..3200+

>mRNA_L-elsbetiae_contig5827.14266.1 ID=mRNA_L-elsbetiae_contig5827.14266.1|Name=mRNA_L-elsbetiae_contig5827.14266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig5827:2630..3200+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGACAGGAATGGTTTGGTCGAGGTTCGTTGGGGCAGGCAGCGCGCGG
GGTGACAATAAATAAGTCAGAGCTGCAGATGAGGTGGAGGACGTGTGACC
CGACCCATCCTTCCGTGTCATCTCCATTCAGCCCGTGTGATAGAAGTGAG
CGTGCGAAGCGGTGGAGCGCTCCTTGGGTGTGGTCGAGGGCACGCGTCGA
TCGCACCGTTTTGCGAAACGCGAAACTAGTAGGTATGTGTGTAGGTAAAC
GAAAAAGCGCGCAGCACACGTGTGCGTCAACGGTTCGATTGTCTTGGATC
TGTCCTGTGGAGAAGGTACGAAATCAAGATTCGATGAAAAGGGCAAGTAA
TATGGGACCGCCTACGCAGAAGTTAATTTTATACTACTAAATGGGACAGG
AATGGTTTGGTCGAGGTTCGTTGGGGCAGGCAGCGCGCGGGGTGACAATA
AATAAGTCAGAGCTGCAGATGAGGTGGAGGACGTGTGACCCGACCCATCC
TTCCGTGTCATCTCCATTCAGCCCGTGTGATAGAAGTGAGCGTGCGAAGC
GGTGGAGCGCTCCTTGGGTGTGGTCGAGGGCACGCGTCGATCGCACCGTT
TTGCGAAACGCGAAACTAGTAGGTATGTGTGTAGGTAAACGAAAAAGCGC
GCAGCACACGTGTGCGTCAACGGTTCGATTGTCTTGGATCTGTCCTGTGG
AGAAGGTACGAAATCAAGATTCGATGAAAAGGGCAAGTAATATGGGACCG
CCTACGCAGAAGTTAATTTTATACTACTAA
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