mRNA_L-elsbetiae_contig5823.14262.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5823.14262.1
Unique NamemRNA_L-elsbetiae_contig5823.14262.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5823.14262.1 vs. uniprot
Match: D7FZG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG1_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.270e-29
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARTTALAREVVTYNRNVFVKGVPQGK 177
            MSQATTFWRLAGMTYLEYASKATTVMRGALKEPAR+TALARE V YNRNVFV G PQGK
Sbjct:    1 MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGK 59
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BLAST of mRNA_L-elsbetiae_contig5823.14262.1 vs. uniprot
Match: A0A835YQS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS1_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.160e-13
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARTTALAREVVTYNRNVFVKGVPQGK 177
            ATTFWR+AG++YLEYA+  TT +R  LKEP R+ A+ R  V+YNR VF  GV   K
Sbjct:    6 ATTFWRIAGLSYLEYAAATTTALRMGLKEPMRSKAMTRNAVSYNRAVFKDGVSGAK 61
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BLAST of mRNA_L-elsbetiae_contig5823.14262.1 vs. uniprot
Match: A0A1Z5K8B7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8B7_FISSO)

HSP 1 Score: 60.1 bits (144), Expect = 1.260e-10
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   13 TTFWRLAGMTYLEYASKATTVMRGALKEPARTTALAREVVTYNRNVFVKG 162
            TTFWR+AGM+YL+Y +KA   MR  LKEPA+T A+A+E   YN  V+  G
Sbjct:    7 TTFWRVAGMSYLQYINKAAGTMRSVLKEPAKTRAMAQEAYGYNAAVWEAG 56
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BLAST of mRNA_L-elsbetiae_contig5823.14262.1 vs. uniprot
Match: W7U8A3_9STRA (Atp synthase subunit epsilon n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U8A3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.530e-10
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARTTALAREVVTYNR 144
            ATT+WR+AG+TYL+Y SKA  V+R ALKEP RT  +A+E + + R
Sbjct:    5 ATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKR 49
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BLAST of mRNA_L-elsbetiae_contig5823.14262.1 vs. uniprot
Match: B7G8W9_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8W9_PHATC)

HSP 1 Score: 60.5 bits (145), Expect = 3.430e-10
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    4 SQATTFWRLAGMTYLEYASKATTVMRGALKEPARTTALAREVVTYNRNVFVKG 162
            S  TTFWR+AGM+YL+Y +KA T MRGALKEPA+  A+ +E   Y  + +  G
Sbjct:   60 SPVTTFWRMAGMSYLQYVNKAATSMRGALKEPAQRKAMEQEAFAYKVSTWQDG 112
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BLAST of mRNA_L-elsbetiae_contig5823.14262.1 vs. uniprot
Match: A0A448YV42_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV42_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.350e-8
Identity = 23/56 (41.07%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARTTALAREVVTYNRNVFVKGVPQGK 177
            +TT+WR+AGMTYL+Y ++A   +R  LKEP ++  LA+    YN + +  G+   K
Sbjct:    5 STTYWRIAGMTYLQYVNRAAGAVRSGLKEPTKSKLLAQSEFKYNASAWESGIQGAK 60
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BLAST of mRNA_L-elsbetiae_contig5823.14262.1 vs. uniprot
Match: A0A7S3L8J2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8J2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.730e-8
Identity = 22/51 (43.14%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   13 TTFWRLAGMTYLEYASKATTVMRGALKEPARTTALAREVVTYNRNVFVKGV 165
            TTFWR+AG++YL+Y +KA + +RGALKEPA++    ++  ++ ++ +  GV
Sbjct:   50 TTFWRMAGLSYLQYVNKAASTIRGALKEPAKSRLAVQDTFSFKKSSWSGGV 100
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BLAST of mRNA_L-elsbetiae_contig5823.14262.1 vs. uniprot
Match: A0A444ENQ8_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444ENQ8_ENSVE)

HSP 1 Score: 52.0 bits (123), Expect = 1.790e-7
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARTTALAREVVTYNRNVFVKGVPQ 171
            A  FWR AGMTY+ Y++   +++RG LKEP R+ A+ARE V +  + +  G P+
Sbjct:    7 AVPFWRAAGMTYITYSNICASLVRGCLKEPHRSEAVAREKVHFTVSKWADGKPE 60
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BLAST of mRNA_L-elsbetiae_contig5823.14262.1 vs. uniprot
Match: A0A2V0NKU9_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NKU9_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 4.340e-7
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   19 FWRLAGMTYLEYASKATTVMRGALKEPARTTALAREVVTYNRNVFVKG 162
            FWR AGM+YL+YA+    +MRG +KEP ++ ALAR+ + +  + F  G
Sbjct:    9 FWRAAGMSYLKYANICADMMRGVMKEPFKSKALARQSIYFRSSKFADG 56
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BLAST of mRNA_L-elsbetiae_contig5823.14262.1 vs. uniprot
Match: A0A1E7ER17_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ER17_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.780e-7
Identity = 23/56 (41.07%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARTTALAREVVTYNRNVFVKGVPQGK 177
            AT FWR+AGM+YL+Y ++A   +R ALKEP ++   A+   +Y  + +V G    K
Sbjct:    5 ATNFWRIAGMSYLQYVNRAAGSVRSALKEPMKSKLSAQGEFSYKASAWVDGTQMSK 60
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5823.14262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FZG1_ECTSI2.270e-2991.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YQS1_9STRA1.160e-1357.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5K8B7_FISSO1.260e-1056.00Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
W7U8A3_9STRA2.530e-1057.78Atp synthase subunit epsilon n=2 Tax=Monodopsidace... [more]
B7G8W9_PHATC3.430e-1052.83Predicted protein n=4 Tax=Phaeodactylum tricornutu... [more]
A0A448YV42_9STRA2.350e-841.07Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3L8J2_9STRA5.730e-843.14Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A444ENQ8_ENSVE1.790e-744.44Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A2V0NKU9_9CHLO4.340e-745.83Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A1E7ER17_9STRA7.780e-741.07Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5823contigL-elsbetiae_contig5823:2558..4283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionATPase, F1 complex, epsilon subunit, mitochondrial
Ec32 orthologEc-19_003180.1
Exons2
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.8280997-CDS-L-elsbetiae_contig5823:2557..26081622816626.8280997-CDS-L-elsbetiae_contig5823:2557..2608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5823 2558..2608 +
1691683695.2997966-CDS-L-elsbetiae_contig5823:2557..26081691683695.2997966-CDS-L-elsbetiae_contig5823:2557..2608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5823 2558..2608 +
1622816626.841768-CDS-L-elsbetiae_contig5823:4157..42831622816626.841768-CDS-L-elsbetiae_contig5823:4157..4283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5823 4158..4283 +
1691683695.319105-CDS-L-elsbetiae_contig5823:4157..42831691683695.319105-CDS-L-elsbetiae_contig5823:4157..4283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5823 4158..4283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5823.14262.1prot_L-elsbetiae_contig5823.14262.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5823 2558..4283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5823.14262.1

>prot_L-elsbetiae_contig5823.14262.1 ID=prot_L-elsbetiae_contig5823.14262.1|Name=mRNA_L-elsbetiae_contig5823.14262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARTTALAREVVTYNRNV
FVKGVPQGK
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mRNA from alignment at L-elsbetiae_contig5823:2558..4283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5823.14262.1 ID=mRNA_L-elsbetiae_contig5823.14262.1|Name=mRNA_L-elsbetiae_contig5823.14262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1726bp|location=Sequence derived from alignment at L-elsbetiae_contig5823:2558..4283+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCAGGCAACAACATTCTGGCGGTTGGCAGGCATGACGTACCTAGA
GGTGAGATACGGTGAAAGAAAAAGTGGCTGCTTGTGTTGGTTTGCAACCA
AAGAACAGCACGAAACGTCGTTTCTGCCCACTACTGCATGGACTCAGGGC
AACGCAGCGCACACGACGCACGTAGAGAGGATGCGATGCTAGGGACAACC
ACTCTAACACACGAGATACGGGAGATGTTATGGGCATTCTATTTCTCCTT
TGCCGCTGGTTTTCACCTCCCTCCCCCCATCGCCATCCTTTGCACACGCG
GAAGGCTAACCGCGAAACAGCAGCGGTACCCGCTGCCCGTCCCTCAGTCG
ACACAGCAGTAGTATGATCCATCAAGGTTCTTCGAAAATTCTATGTAGGG
AACATCGCAGGAGTCGCTGTTTTTGACAGGCCGTGCTCTTTACTGGAATT
GCGCACGCACAACACAAATGCGGCCAAGGGTTCCAATGTTCCTCTAGCGA
AGAGTATTTACGAGTTCCTCTCCATCCTTGTTCGTGCCCCCGGACCCCTT
CACTCTCCAAGAAGAAGCTCGGCAGGAAAAATGCTGCAAACAGCGTCGCC
TTGCAAGCTTGCAGACTAGACGGCCGTGTAGAAAGGTTCCTTGCGTGCCA
AAGACACCCTGCTGCATCCAAGATACAACCGTGCAGACGACGACAGAGAG
AGGAATCCGGGATACCTGTAGGTGACACAAGATACCACACCCCCTGGACC
GAATTTTAGAGCTCCATTACTCCGCAACGAAGAGGGTGCCAGCACCAAAC
GACACATTTTCGGACAGCCCTTGACTAGATCTTTCCAACGCCACCCTCTT
TGGCACTAGAACTCTTCTTGCGAGGGAGGAATCGAGCTTTGAAAATCTGT
CCAGGGGGTGTGGTATCTTGTGTCACCTACGGTATATTTGTGTTGTACAC
CGACGACTAAAGAAACCGCTGACCAGTGCGCACGTACCGAGAGTTACAAG
GTGGGGTATCGTGAAACCCCAAACGTCAGGTAGTACTCGTAGCAAAACCA
TAATCTTGAGAACTGTTCCTTCATGGTCCTAGCAGCACCAGCCTGTAGTA
TGTAGGGGGTGGTGTAAAACCTGTCGACCCCGCCTAGAGTACAAAGGATG
GTGGTGGGTAGGCTTTTGTTCGGGCGCGGAACCCCCGCCCCGCCCCCGCC
CAAATCCCGCGATTTACCGTATTTTTCAAGATTTTTTTACTCCTCTTGGA
ATTTTTCCGCAGAATCCCCCCTGTGGCAGAAGCGATAAACAAGAACGAAG
CGTGTTGCGTGCTAACTTCGTATTTCACTCCAACCGGTGGTGTTTTATTT
TCCATCGAACTGACCTGCGGTCCTGCTTTCTGCGGAAGCGCTCTCCCCTT
GCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGATGATGATGATGATGATGATGATGATACTCTGGATTTG
AGTATGTACTTACTATCTCTCCGTTTGAGCTCCTGACGCTGCGCCCCTTT
CACCGCGTCTTCCGCTTTGTGCTCTTCTAAACCACGGCGCTGTGTCGCAG
TACGCTAGCAAGGCCACCACGGTGATGCGCGGCGCCCTCAAGGAGCCCGC
TCGCACCACGGCGCTGGCGAGGGAAGTGGTCACCTACAACCGCAACGTCT
TCGTCAAGGGGGTGCCGCAGGGAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5823:2558..4283+

>mRNA_L-elsbetiae_contig5823.14262.1 ID=mRNA_L-elsbetiae_contig5823.14262.1|Name=mRNA_L-elsbetiae_contig5823.14262.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig5823:2558..4283+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCAGGCAACAACATTCTGGCGGTTGGCAGGCATGACGTACCTAGA
GATGTCTCAGGCAACAACATTCTGGCGGTTGGCAGGCATGACGTACCTAG
AGTACGCTAGCAAGGCCACCACGGTGATGCGCGGCGCCCTCAAGGAGCCC
GCTCGCACCACGGCGCTGGCGAGGGAAGTGGTCACCTACAACCGCAACGT
CTTCGTCAAGGGGGTGCCGCAGGGAAAGTACGCTAGCAAGGCCACCACGG
TGATGCGCGGCGCCCTCAAGGAGCCCGCTCGCACCACGGCGCTGGCGAGG
GAAGTGGTCACCTACAACCGCAACGTCTTCGTCAAGGGGGTGCCGCAGGG
AAAG
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