mRNA_L-elsbetiae_contig5819.14256.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5819.14256.1 vs. uniprot
Match: D7FHK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK6_ECTSI) HSP 1 Score: 532 bits (1371), Expect = 2.460e-182 Identity = 291/379 (76.78%), Postives = 321/379 (84.70%), Query Frame = 1 Query: 67 QAWAMLEDERADVRRDDQSPSRKRADA--ARKAQLEAESGTA--ILNPDLAARVSGLLLPSAVTLLEALVASSRLEKAMESQQGAVCQCMGQAVAQMPVQGGVRFAAYRSMAVIIRYIKPERAAASLGVPILPLLFNEALLALGNRVSLHPLNTRKESSKGNKDGKDAASSSTSAPPPLFFNVKTPLNNGHGAKLHEDTVWAGVECLAVFILDCGLFLPAAQVAEVERVVTEGVELLAHRPLEVSPFNDDEPQVLRHASTREAFVRLVHYYLLLAEEKKRNPGSTLYSEARLAFHCHLQDPDGAVARECRVALTALKTDTNSNRSHKVLDKELEEMEAEADNIMHHAGAGEAGYTLEELENGEYHVVRRVPKPKSPRKQ 1191 QAWA LE+ERA V+RDD SP+R+RA A A+++ + TA L+P+LAARVSGLLLPSAVTLLEALVASSRLEKAME +QG VCQCMGQAVAQ PVQGGVRFAAYR+MAVIIRYI+P+ AA LGVPILPLLFNEALLALGNRV+LH LNT ++ G + + P PL FNV+ PLNNGHGAKLHEDTVWAGVECLA FILDCGLFLPAAQVAEVE VVTEGVELLAHRPLEVSPFN+DEPQVLRHASTREAFVRLVHYYLLLAEEKKRNPGS LY+EA+LAFHCHLQDPDGAVARECRVALTALKTD +R+ K +K LE+MEAEAD MH++G GE GYTLEELENGEYHVVRRV K SPRK+ Sbjct: 319 QAWAKLEEERAGVKRDDPSPTRRRASATTAQESATSTNTSTADGTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYRAMAVIIRYIRPDTAAEGLGVPILPLLFNEALLALGNRVNLHALNTTTKTDVGPRSRNSEKGGGS--PKPLLFNVRNPLNNGHGAKLHEDTVWAGVECLATFILDCGLFLPAAQVAEVESVVTEGVELLAHRPLEVSPFNEDEPQVLRHASTREAFVRLVHYYLLLAEEKKRNPGSNLYTEAKLAFHCHLQDPDGAVARECRVALTALKTDRVDHRT-KENEKALEDMEAEADQNMHNSGTGEVGYTLEELENGEYHVVRRVSK--SPRKK 692
BLAST of mRNA_L-elsbetiae_contig5819.14256.1 vs. uniprot
Match: A0A6H5JC72_9PHAE (GLOBIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC72_9PHAE) HSP 1 Score: 530 bits (1364), Expect = 6.860e-172 Identity = 297/402 (73.88%), Postives = 328/402 (81.59%), Query Frame = 1 Query: 1 PLSLSLSLSLSHRNLTETSRPLQAWAMLEDERADVRRDDQSPSRKRADA--ARKAQLEAESGTAILNPDLAARVSGLLLPSAVTLLEALVASSRLEKAMESQQGAVCQCMGQAVAQMPVQGGVRFAAYRSMAVIIRYIKPERAAASLGVPILPLLFNEALLALGNRVSLHPLNTRKESSKGNKDGKDAASSSTSAPPPLFFNVKTPLNNGHGAKLHEDTVWAGVECLAVFILDCGLFLPAAQ---VAEVERVVTEGVELLAHRPLEVSPFNDDEPQVLRHASTREAFVRLVHYYLLLAEEKKRNPGSTLYSEARLAFHCHLQDPDGAVARECRVALTALKTDTNSNRSHKVLDKELEEMEAEADNIMHHAGAGEAGYTLEELENGEYHVVRRVPKPKSPRKQ 1191 P +SLS+SL R L QAWA LE+ERA V+RDD P+R+RA A A+++ + L+P+LAARVSGLLLPSAVTLLEALVASSRLEKAME +QG VCQCMGQAVAQ PVQGGVRFAAYRSMAVI+RYIKPE AA LGVPILPLLFNEALLALGNRV+LH LNT+ + +++ S P L FNV+ PLNNGHGAKLHEDTVWAGVECLA FILDCGLFLPAAQ VAEVE VVTEGVELLAHRPLEVSPFN+DEPQVLRHASTREAFVRLVHYYLLLAEEKKRNPGS LY+EA+LAFHCHLQDPDGAVARECRVALTALKTD +R+ K +K LE+MEAEAD MH++G GE GYTLEELENGEYHVVRRV K SPRK+ Sbjct: 1175 PFLVSLSISLVQRVLRMGE---QAWAKLEEERAGVKRDDPGPTRRRASAKTAQESTTHTNTAAGTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQTPVQGGVRFAAYRSMAVIVRYIKPETAAEGLGVPILPLLFNEALLALGNRVNLHALNTKTVVAPRSRNSDKGGGS----PKTLLFNVRNPLNNGHGAKLHEDTVWAGVECLATFILDCGLFLPAAQAMPVAEVESVVTEGVELLAHRPLEVSPFNEDEPQVLRHASTREAFVRLVHYYLLLAEEKKRNPGSNLYTEAKLAFHCHLQDPDGAVARECRVALTALKTDRVDHRT-KENEKALEDMEAEADQNMHNSGTGEVGYTLEELENGEYHVVRRVSK--SPRKK 1566 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5819.14256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5819.14256.1 >prot_L-elsbetiae_contig5819.14256.1 ID=prot_L-elsbetiae_contig5819.14256.1|Name=mRNA_L-elsbetiae_contig5819.14256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=401bp PLSLSLSLSLSHRNLTETSRPLQAWAMLEDERADVRRDDQSPSRKRADAAback to top mRNA from alignment at L-elsbetiae_contig5819:430..11906- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5819.14256.1 ID=mRNA_L-elsbetiae_contig5819.14256.1|Name=mRNA_L-elsbetiae_contig5819.14256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11477bp|location=Sequence derived from alignment at L-elsbetiae_contig5819:430..11906- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5819:430..11906- >mRNA_L-elsbetiae_contig5819.14256.1 ID=mRNA_L-elsbetiae_contig5819.14256.1|Name=mRNA_L-elsbetiae_contig5819.14256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2406bp|location=Sequence derived from alignment at L-elsbetiae_contig5819:430..11906- (Laminarionema elsbetiae ELsaHSoW15)back to top |