mRNA_L-elsbetiae_contig5818.14255.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5818.14255.1
Unique NamemRNA_L-elsbetiae_contig5818.14255.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5818.14255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5818contigL-elsbetiae_contig5818:6715..7668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size242
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5818.14255.1prot_L-elsbetiae_contig5818.14255.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5818 6721..7668 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.1261146-UTR-L-elsbetiae_contig5818:6714..67201622816626.1261146-UTR-L-elsbetiae_contig5818:6714..6720Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5818 6715..6720 +
1691683694.7273517-UTR-L-elsbetiae_contig5818:6714..67201691683694.7273517-UTR-L-elsbetiae_contig5818:6714..6720Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5818 6715..6720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.1387067-CDS-L-elsbetiae_contig5818:6720..68151622816626.1387067-CDS-L-elsbetiae_contig5818:6720..6815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5818 6721..6815 +
1691683694.7383034-CDS-L-elsbetiae_contig5818:6720..68151691683694.7383034-CDS-L-elsbetiae_contig5818:6720..6815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5818 6721..6815 +
1622816626.149774-CDS-L-elsbetiae_contig5818:7001..70981622816626.149774-CDS-L-elsbetiae_contig5818:7001..7098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5818 7002..7098 +
1691683694.7534204-CDS-L-elsbetiae_contig5818:7001..70981691683694.7534204-CDS-L-elsbetiae_contig5818:7001..7098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5818 7002..7098 +
1622816626.1628404-CDS-L-elsbetiae_contig5818:7626..76681622816626.1628404-CDS-L-elsbetiae_contig5818:7626..7668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5818 7627..7668 +
1691683694.7649074-CDS-L-elsbetiae_contig5818:7626..76681691683694.7649074-CDS-L-elsbetiae_contig5818:7626..7668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5818 7627..7668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5818.14255.1

>prot_L-elsbetiae_contig5818.14255.1 ID=prot_L-elsbetiae_contig5818.14255.1|Name=mRNA_L-elsbetiae_contig5818.14255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
MQGKRKLRHHGKSPRRRSARAASSRQPNYAESPTREPSKRQRKASVPATG
AGHGGDGGRVTPQKWPCAKEERGRVVAT
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mRNA from alignment at L-elsbetiae_contig5818:6715..7668+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5818.14255.1 ID=mRNA_L-elsbetiae_contig5818.14255.1|Name=mRNA_L-elsbetiae_contig5818.14255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig5818:6715..7668+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCAATGCAGGGTAAGCGGAAGCTTCGGCACCACGGCAAGTCCCCCCG
CCGCAGAAGTGCCCGTGCAGCCAGCAGCCGGCAACCCAACTACGCGGAAA
GGTAAGCATGTTGATCAGTCTTAGAATTTGGCGATACGTAGCGTACAGTC
GCTGTGTAGTACATGGGGCACGGGCCAATCCGTGACGGTACCGGGGGGGT
GTACAGTGGTCGAAGCATGACACCCGCAGTACAGTACTCCTCAAACATCC
ATGTTGTGTATTCTCCGTTTGTATTTTGGTTTGTCAGCCCGACGAGAGAG
CCGTCCAAGCGTCAAAGGAAGGCATCTGTGCCGGCGACAGGGGCAGGACA
CGGTGGTGATGGGGGGCGCGTGACCCCGCAAAAGGTGGGTTGTGTCTGCT
TTGATTGAGTGTCGGCGTCATTTTTCCCGTAGACATGATGCCTTTGATAC
TGCCTACACCTGTGGACAGCTGAAATGGCAGTATGTAGCCGGGCAATGAG
TAGGGTACTCAGGGGATTCGTTGCGAGGTTGAACAGCAGCAGTATCTACG
CTGTCCAAACACCAGGTGTGCTGGAAGTACCGCGAGTTATCGTACATGCT
CTCTGCGGCGAGCGACACAATGCCCGAAGTGGTGATAGTAAACTTCATTC
ATGGACTTCTTTGGACAAACCACTCTTGATAGTGGCGCAAAGGCTAAACG
CCAAAAGAGAGTAGACGAGCAAGAGGAGTTGCAGGTGTTGGGGAAAATGG
TGAAAGGCAACGTAGAGGGCTATTTACTGCGTTTTTTTTTCGCGGTTGCT
TGTTTTCTTCGCGCCACCCGATGTGATACTCACGTGTGGTGAAGCACATA
CTGCATATCTCAAAGCGATGTTGTGTTGGGGCCCTTGTGCGTTCTGCGGT
CTACAAGTGCAGTGGCCCTGCGCGAAGGAGGAACGTGGAAGGGTTGTGGC
CACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5818:6715..7668+

>mRNA_L-elsbetiae_contig5818.14255.1 ID=mRNA_L-elsbetiae_contig5818.14255.1|Name=mRNA_L-elsbetiae_contig5818.14255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig5818:6715..7668+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGGTAAGCGGAAGCTTCGGCACCACGGCAAGTCCCCCCGCCGCAG
AAGTGCCCGTGCAGCCAGCAGCCGGCAACCCAACTACGCGGAAAGATGCA
GGGTAAGCGGAAGCTTCGGCACCACGGCAAGTCCCCCCGCCGCAGAAGTG
CCCGTGCAGCCAGCAGCCGGCAACCCAACTACGCGGAAAGCCCGACGAGA
GAGCCGTCCAAGCGTCAAAGGAAGGCATCTGTGCCGGCGACAGGGGCAGG
ACACGGTGGTGATGGGGGGCGCGTGACCCCGCAAAAGCCCGACGAGAGAG
CCGTCCAAGCGTCAAAGGAAGGCATCTGTGCCGGCGACAGGGGCAGGACA
CGGTGGTGATGGGGGGCGCGTGACCCCGCAAAAGTGGCCCTGCGCGAAGG
AGGAACGTGGAAGGGTTGTGGCCACCTGGCCCTGCGCGAAGGAGGAACGT
GGAAGGGTTGTGGCCACC
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