mRNA_L-elsbetiae_contig5812.14252.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5812.14252.1
Unique NamemRNA_L-elsbetiae_contig5812.14252.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5812.14252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5812contigL-elsbetiae_contig5812:6514..9724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size478
Cds size477
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5812.14252.1prot_L-elsbetiae_contig5812.14252.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5812 6514..9724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816625.714126-CDS-L-elsbetiae_contig5812:6513..65341622816625.714126-CDS-L-elsbetiae_contig5812:6513..6534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 6514..6534 -
1691683694.4325197-CDS-L-elsbetiae_contig5812:6513..65341691683694.4325197-CDS-L-elsbetiae_contig5812:6513..6534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 6514..6534 -
1622816625.726055-CDS-L-elsbetiae_contig5812:7797..78901622816625.726055-CDS-L-elsbetiae_contig5812:7797..7890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 7798..7890 -
1691683694.4416394-CDS-L-elsbetiae_contig5812:7797..78901691683694.4416394-CDS-L-elsbetiae_contig5812:7797..7890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 7798..7890 -
1622816625.7364876-CDS-L-elsbetiae_contig5812:8232..83521622816625.7364876-CDS-L-elsbetiae_contig5812:8232..8352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 8233..8352 -
1691683694.4498663-CDS-L-elsbetiae_contig5812:8232..83521691683694.4498663-CDS-L-elsbetiae_contig5812:8232..8352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 8233..8352 -
1622816625.7485826-CDS-L-elsbetiae_contig5812:9481..97241622816625.7485826-CDS-L-elsbetiae_contig5812:9481..9724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 9482..9724 -
1691683694.458099-CDS-L-elsbetiae_contig5812:9481..97241691683694.458099-CDS-L-elsbetiae_contig5812:9481..9724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 9482..9724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5812.14252.1

>prot_L-elsbetiae_contig5812.14252.1 ID=prot_L-elsbetiae_contig5812.14252.1|Name=mRNA_L-elsbetiae_contig5812.14252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MNVNQQAGGGSTPPMHQLQQLLAAPQQGAGVAVDGAAPSVMTTPPVSTRG
ASSAHAADAPLDLTGDSQWPASASSAPAPRSNGSPIAMWEATESLGDQPG
ACGLGTLAAAEDERLWRTNIPATSTSMGVTYLPTSSEEDDEEFGSPFNSE
SLIAPTPPA
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mRNA from alignment at L-elsbetiae_contig5812:6514..9724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5812.14252.1 ID=mRNA_L-elsbetiae_contig5812.14252.1|Name=mRNA_L-elsbetiae_contig5812.14252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3211bp|location=Sequence derived from alignment at L-elsbetiae_contig5812:6514..9724- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGTGAACCAGCAGGCAGGTGGTGGTTCGACTCCTCCTATGCACCA
GCTTCAACAGCTTCTCGCAGCTCCTCAGCAGGGTGCAGGAGTGGCTGTTG
ATGGGGCCGCGCCTTCGGTGATGACGACCCCTCCTGTTTCGACCCGCGGC
GCGAGTTCTGCACATGCAGCCGACGCCCCCCTCGACCTTACTGGCGATAG
CCAGTGGCCAGCCTCCGCGTCATCAGCCCCTGCTCCTCGTTCGGTGAGTG
TCTCAGCTTGTGACAGTTCGCCGTGTATTTTCTCTCCTCCGTTCCCGGCA
ACGCCCCACATGCGTTTGAGATCAGTTATATTGATTTTGATGGGTTATAC
CTCGCGCCCACGCGGTGAGGCCGTTGATAACTGCAGGAAGAAGAGCGTTC
TTGGCACGAGCACTACTGCTTTCATTGTATGTGGTGCGATGTACGAAATC
TTTGTCTTTCTTCTATTCATGGAGAAAAAACGATTGTATTGCGTCCTTCT
CAGGCACTCAGGAAGTAAGCATGTAGGTTTAGTGTCGGTGGGATATGTAT
CCATAGACTAGTCTAAGGCCTGGAACGTAGGATCGCCATTGGTATGTTAG
AATGTCGACCAGTGGCAGATTCCTTGGCGTAATGGATGGTTAGAAAATAG
TATCGTAACTGGCGCAATTTCTATGGATGTCCTTGGGCGAATTCGTGTTT
TTTCGCCGAAGGGTGAAAAGAAGCTGACGCGCCATCATGTAGCGAGGGAG
GGATATAGCGTACGTACACACGCTGAACGCACGGGTTCCTTGGTTGATGT
TGATAACAAACCAAGTCCTTCGCGGAGTTAGTCATCTGTAACGAAGAGCT
TGTTGCGGAATGTGAATGAAATCGTGGCTGCAAAAATTGCCGTGCGAGAG
AAAAGGGCGCCGTGAGAGAGATGCTCAGCCATCCATTTGTAGTTGCAGAT
AAATCTTAATCTTCGGACGTACGCACAAAAAATTGGCTGACATAATTACA
GCGCCCACTATTGTAGGGAGAGTAGCAACGCTGAAGTGGTGGTGGCAGCA
CACATGGTATGCTTGATGCTTGTGTACAAGCCAACCCCCTGGCGACGGGA
CTCGTGTGATCGCGTGTTTTTTGTGAATCTATATGCCAGAGCTTGGGCGT
GAAACATCGGTTAGCCGTCCGTTTGTAATGTGTGCGTGAAGAGTAAAAAA
CTTCCAATACAGCCTGTTGAGTTGTAGTAGCCACCCACCAAATCATTGCA
GCAACAGATGGGAGCCACTGTGTTTTATGACACGTTAGGAGCGAGCACAT
CGCGACTGCTGTGACAGCGCAACCTTTCTCCTGTTTTTTCATCATGATCG
TGGCTGCCCGTCCTTTGGACAGAATGGATCGCCAATCGCGATGTGGGAAG
CGACAGAGAGTTTAGGTGATCAACCAGGAGCCTGCGGACTAGGAACCCTT
GCCGCCGCTGAAGATGAGAGGCTTTGGCGTACAAATATACCGGTACGGGA
TAGCTTTCCCTTGTCATTTAAATGTTAATGGTGTCACAATGTAGTTTTTA
TTGGACAAACGGACGGTGCGAGACATCATCCTGTCCTCTGCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTGGGTTTTTTTTTT
TTTTTTTCCTCCGCCTCGGCCCCTCATGTTATCGCGTTCGCGGNNNNNNN
NNNTTTTTGGACAAAGGATAGGTGCGGGCAAACATCCTTTCCTTTGCCCC
CCCCCCCCCCCTCAGCCACTCCGATACATGTCTGGGGTTTGACTTCTAAT
TGTCGTGCCCCCTATGTACGCGCATTTATCGCAGGCGACTTCGACGTCAA
TGGGCGTGACATACCTGCCGACATCCAGCGAAGAGGACGACGAAGAGTTC
GGGTCGCCTTTCAACTCTGAATCACTGGTAAGCAATGTTTTTGGCCGCCA
CGTTTGCTGTAGGCCGTTGCCCGTACGCCATCTTTGTCGCTGTGTTTGGT
TTGATTGTTGTCTGGGTCCTCGCGTTTAAAATCGGACTCTGAACGTGAGG
GTAACGCAAGTATAGCATATCGTCGCCACCTCATCAAAATCGTAAGGTTG
CCGCAACTCTGATACGCCACGCCTACTACTGTAGGGTCGCAGAGGTAGGC
GACACGAAACAAGAAAAACCAACCCAACAGGTGCCGTGAAACCGTGAAAC
CTCCAGAAGCGAAGAGGAAAATATCCATACCCACACATGTAGTAGCGGCA
GTAGCAGCAGCAGACCGCTCTCTGTGCAGTTATGAAGGTATGTGCAAAGC
ACCCTCCTTGTCCAATACCGCGAGGTGTACTATTGATTGTTATGGAGTGC
TCCTCGGGCAGTCATCGTGGGGTCCTATCAGCGACTAAATAGGTTCTTGG
TTCAAAACGTCTCTAGGTTGTTTTGGTTGTGCTTTTTGCACTCGCTCAAA
AGCGCACCGGGGTAAGAGATTGGCAATAACGAAAACCCTCCGGGTAATGC
AGACAGGTTTCAGCTTTCATGGCTGTGTAGAATGTCATGATGTTGGTGCT
ACACCAGGTGTTGATGGTGCTTTGTTTCAAGGAGGGGGTGTTGGTGTACC
TGCAAGCCCAGGGTTTCATGTGAAGCATGCATGAACCGTGATGGAGACAC
GTCCCCTTGTTATAAGATTCAATTATTCAAAGTACCTCCTGCAGAACTGC
AGCAATCATTGCTCGCCGGCGTAAGAACACCCCTCCCCTTGAGGCCACAT
CCCGTGGAAATACGGGGCAGCAGTCATCGTGGGCACTGACGTCACACGCA
GGCACCGACGTGACACGCTCCCGCGATCATCCTCTGTTTTTATTCACCCC
TTGTAGACGGTACAGCAGCAGGGCAGTGATATATGACCTACATAGTTGTG
GTTATCACCCCCCGCCCTTTTGGTCTCCCTCCTTGTCGTGGGAACCCTCA
CAACCTGCACTTTATCGCCGACGGGCAATACCACCCCCCCCCCTCGGATA
ACCACCCTCGGTGGCAAGGTCTTGAAGCACCCAAAGGTGTCACCGGGGGG
GTTGTGTCTTGGGTTGTTTATAGTTTTCTTCTGTATGCCACCTCTTCTGA
TTGCGATGCACACGACGCACCGGGAATGACTCGTAACAACATGTTTGTTT
CGTTGAATCCTCCGTCTTTTTTTTGCCGCCACAACCACAGATCGCGCCGA
CTCCCCCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5812:6514..9724-

>mRNA_L-elsbetiae_contig5812.14252.1 ID=mRNA_L-elsbetiae_contig5812.14252.1|Name=mRNA_L-elsbetiae_contig5812.14252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig5812:6514..9724- (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGTGAACCAGCAGGCAGGTGGTGGTTCGACTCCTCCTATGCACCA
GCTTCAACAGCTTCTCGCAGCTCCTCAGCAGGGTGCAGGAGTGGCTGTTG
ATGGGGCCGCGCCTTCGGTGATGACGACCCCTCCTGTTTCGACCCGCGGC
GCGAGTTCTGCACATGCAGCCGACGCCCCCCTCGACCTTACTGGCGATAG
CCAGTGGCCAGCCTCCGCGTCATCAGCCCCTGCTCCTCGTTCGATGAACG
TGAACCAGCAGGCAGGTGGTGGTTCGACTCCTCCTATGCACCAGCTTCAA
CAGCTTCTCGCAGCTCCTCAGCAGGGTGCAGGAGTGGCTGTTGATGGGGC
CGCGCCTTCGGTGATGACGACCCCTCCTGTTTCGACCCGCGGCGCGAGTT
CTGCACATGCAGCCGACGCCCCCCTCGACCTTACTGGCGATAGCCAGTGG
CCAGCCTCCGCGTCATCAGCCCCTGCTCCTCGTTCGAATGGATCGCCAAT
CGCGATGTGGGAAGCGACAGAGAGTTTAGGTGATCAACCAGGAGCCTGCG
GACTAGGAACCCTTGCCGCCGCTGAAGATGAGAGGCTTTGGCGTACAAAT
ATACCGAATGGATCGCCAATCGCGATGTGGGAAGCGACAGAGAGTTTAGG
TGATCAACCAGGAGCCTGCGGACTAGGAACCCTTGCCGCCGCTGAAGATG
AGAGGCTTTGGCGTACAAATATACCGGCGACTTCGACGTCAATGGGCGTG
ACATACCTGCCGACATCCAGCGAAGAGGACGACGAAGAGTTCGGGTCGCC
TTTCAACTCTGAATCACTGGCGACTTCGACGTCAATGGGCGTGACATACC
TGCCGACATCCAGCGAAGAGGACGACGAAGAGTTCGGGTCGCCTTTCAAC
TCTGAATCACTGATCGCGCCGACTCCCCCGGCGATCGCGCCGACTCCCCC
GGCG
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