mRNA_L-elsbetiae_contig5812.14251.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5812.14251.1
Unique NamemRNA_L-elsbetiae_contig5812.14251.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5812.14251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5812contigL-elsbetiae_contig5812:4077..4920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size547
Cds size546
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816625.6710143-CDS-L-elsbetiae_contig5812:4076..42411622816625.6710143-CDS-L-elsbetiae_contig5812:4076..4241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 4077..4241 -
1691683694.413492-CDS-L-elsbetiae_contig5812:4076..42411691683694.413492-CDS-L-elsbetiae_contig5812:4076..4241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 4077..4241 -
1622816625.6830008-CDS-L-elsbetiae_contig5812:4539..49201622816625.6830008-CDS-L-elsbetiae_contig5812:4539..4920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 4540..4920 -
1691683694.4236124-CDS-L-elsbetiae_contig5812:4539..49201691683694.4236124-CDS-L-elsbetiae_contig5812:4539..4920Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 4540..4920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5812.14251.1prot_L-elsbetiae_contig5812.14251.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5812 4077..4920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5812.14251.1

>prot_L-elsbetiae_contig5812.14251.1 ID=prot_L-elsbetiae_contig5812.14251.1|Name=mRNA_L-elsbetiae_contig5812.14251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
MALRLICQLQCPVLFGLYGGSRNEATRGETDARAVGYNHAYYHAAAAAIV
APDWRDANGSPVSLPDTHQNDVGCPEDLKAQLTEFDLVACSTTLSPFVGV
DAEGRPDTSELRKKIFFLPKDIKKEHTEMRSRESISGGAGADAVEGDNDE
GNGFKSSGHCWNFCGGRLATMVWEDLMKQKCN
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mRNA from alignment at L-elsbetiae_contig5812:4077..4920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5812.14251.1 ID=mRNA_L-elsbetiae_contig5812.14251.1|Name=mRNA_L-elsbetiae_contig5812.14251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=844bp|location=Sequence derived from alignment at L-elsbetiae_contig5812:4077..4920- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACTACGGCTTATTTGCCAGCTGCAATGCCCGGTGCTCTTCGGCCT
CTACGGCGGGAGCAGGAACGAGGCCACCCGCGGAGAGACCGACGCAAGAG
CCGTGGGCTACAACCACGCGTACTACCATGCCGCGGCGGCGGCGATCGTC
GCCCCCGACTGGAGGGACGCCAACGGCAGTCCCGTCTCGCTCCCGGACAC
CCACCAGAACGACGTGGGCTGCCCGGAAGACCTCAAGGCCCAGCTCACGG
AGTTCGATCTGGTGGCATGCTCTACCACCCTCTCGCCCTTCGTCGGGGTT
GATGCGGAGGGGCGTCCCGACACCTCCGAACTTCGCAAGAAGATCTTCTT
CCTCCCGAAGGACATCAAGAAAGAGCACACGGTACGTTCAAAACGCAGTC
ACTGGGTCCTTTCCCACCCTGCCGTCACCTTTTGTTTGCCGGTATTGGTT
GTTGCGCGCGTGTAGTTGGCTTCATGTTTTTGCGTTGTACCTTCAGGTGT
CGTGCGTCCTTCCTTTGCTTGAGTACGCGAAGAGCTCTGTCGTTGCTGTA
GATTGCGTCGTACACTTTTCCATGTGTTCCTTCATCGTTCGTCACATTAA
AAAATAGCCCCCTCCTTCATTGTGTCGTACTCACCACCCCCCCGCTCTCC
TTCGCCGCCCCTTCTTTGTCGACAAGTAGGAGATGCGCAGTCGCGAGAGC
ATCAGCGGGGGCGCGGGAGCCGATGCCGTCGAAGGCGACAACGACGAGGG
CAACGGTTTTAAATCGTCAGGCCACTGCTGGAACTTTTGCGGGGGGCGGC
TCGCAACCATGGTGTGGGAGGACCTCATGAAGCAGAAGTGTAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5812:4077..4920-

>mRNA_L-elsbetiae_contig5812.14251.1 ID=mRNA_L-elsbetiae_contig5812.14251.1|Name=mRNA_L-elsbetiae_contig5812.14251.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig5812:4077..4920- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACTACGGCTTATTTGCCAGCTGCAATGCCCGGTGCTCTTCGGCCT
CTACGGCGGGAGCAGGAACGAGGCCACCCGCGGAGAGACCGACGCAAGAG
CCGTGGGCTACAACCACGCGTACTACCATGCCGCGGCGGCGGCGATCGTC
GCCCCCGACTGGAGGGACGCCAACGGCAGTCCCGTCTCGCTCCCGGACAC
CCACCAGAACGACGTGGGCTGCCCGGAAGACCTCAAGGCCCAGCTCACGG
AGTTCGATCTGGTGGCATGCTCTACCACCCTCTCGCCCTTCGTCGGGGTT
GATGCGGAGGGGCGTCCCGACACCTCCGAACTTCGCAAGAAGATCTTCTT
CCTCCCGAAGGACATCAAGAAAGAGCACACGATGGCACTACGGCTTATTT
GCCAGCTGCAATGCCCGGTGCTCTTCGGCCTCTACGGCGGGAGCAGGAAC
GAGGCCACCCGCGGAGAGACCGACGCAAGAGCCGTGGGCTACAACCACGC
GTACTACCATGCCGCGGCGGCGGCGATCGTCGCCCCCGACTGGAGGGACG
CCAACGGCAGTCCCGTCTCGCTCCCGGACACCCACCAGAACGACGTGGGC
TGCCCGGAAGACCTCAAGGCCCAGCTCACGGAGTTCGATCTGGTGGCATG
CTCTACCACCCTCTCGCCCTTCGTCGGGGTTGATGCGGAGGGGCGTCCCG
ACACCTCCGAACTTCGCAAGAAGATCTTCTTCCTCCCGAAGGACATCAAG
AAAGAGCACACGGAGATGCGCAGTCGCGAGAGCATCAGCGGGGGCGCGGG
AGCCGATGCCGTCGAAGGCGACAACGACGAGGGCAACGGTTTTAAATCGT
CAGGCCACTGCTGGAACTTTTGCGGGGGGCGGCTCGCAACCATGGTGTGG
GAGGACCTCATGAAGCAGAAGTGTAACGAGATGCGCAGTCGCGAGAGCAT
CAGCGGGGGCGCGGGAGCCGATGCCGTCGAAGGCGACAACGACGAGGGCA
ACGGTTTTAAATCGTCAGGCCACTGCTGGAACTTTTGCGGGGGGCGGCTC
GCAACCATGGTGTGGGAGGACCTCATGAAGCAGAAGTGTAAC
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