mRNA_L-elsbetiae_contig5812.14250.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5812.14250.1
Unique NamemRNA_L-elsbetiae_contig5812.14250.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5812.14250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5812contigL-elsbetiae_contig5812:1927..2334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size408
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5812.14250.1prot_L-elsbetiae_contig5812.14250.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5812 1951..2283 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816625.8250966-UTR-L-elsbetiae_contig5812:1926..19501622816625.8250966-UTR-L-elsbetiae_contig5812:1926..1950Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5812 1927..1950 +
1691683694.4898074-UTR-L-elsbetiae_contig5812:1926..19501691683694.4898074-UTR-L-elsbetiae_contig5812:1926..1950Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5812 1927..1950 +
1622816625.8550932-UTR-L-elsbetiae_contig5812:2283..23341622816625.8550932-UTR-L-elsbetiae_contig5812:2283..2334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5812 2284..2334 +
1691683694.5186903-UTR-L-elsbetiae_contig5812:2283..23341691683694.5186903-UTR-L-elsbetiae_contig5812:2283..2334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5812 2284..2334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816625.8433213-CDS-L-elsbetiae_contig5812:1950..22831622816625.8433213-CDS-L-elsbetiae_contig5812:1950..2283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 1951..2283 +
1691683694.504867-CDS-L-elsbetiae_contig5812:1950..22831691683694.504867-CDS-L-elsbetiae_contig5812:1950..2283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 1951..2283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5812.14250.1

>prot_L-elsbetiae_contig5812.14250.1 ID=prot_L-elsbetiae_contig5812.14250.1|Name=mRNA_L-elsbetiae_contig5812.14250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MLLRTSTAVATSLATVCARVGGRVSVESSLCFSSECKTTAVSLSFDSECK
PHLLFVCASATVLGLGLGLCIFWQADLSILCSVFFLPPGFLAGLLRCSQA
SIFALFSRRR*
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mRNA from alignment at L-elsbetiae_contig5812:1927..2334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5812.14250.1 ID=mRNA_L-elsbetiae_contig5812.14250.1|Name=mRNA_L-elsbetiae_contig5812.14250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig5812:1927..2334+ (Laminarionema elsbetiae ELsaHSoW15)
CGGTTTTTAACGTGAAGAAACAAGATGTTGCTCAGGACATCGACTGCTGT
TGCCACGAGCCTGGCAACAGTGTGTGCGAGGGTGGGTGGGCGTGTTTCTG
TCGAGTCTTCGTTGTGTTTCTCCTCCGAATGTAAAACCACAGCGGTCAGT
TTATCATTCGACTCGGAATGTAAGCCACACCTCTTATTTGTTTGTGCTTC
GGCCACAGTGTTGGGGTTAGGGTTAGGTCTGTGTATATTTTGGCAAGCAG
ATTTAAGTATCCTCTGCTCTGTGTTTTTCCTCCCGCCGGGTTTTCTTGCT
GGACTGTTGCGTTGCTCGCAAGCAAGTATTTTCGCTTTGTTTTCGCGAAG
ACGATAAGAGGAAAGAAGCATGTGTCGTGCTTATAGGTGGGGTTTTTCAG
GATACGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5812:1927..2334+

>mRNA_L-elsbetiae_contig5812.14250.1 ID=mRNA_L-elsbetiae_contig5812.14250.1|Name=mRNA_L-elsbetiae_contig5812.14250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig5812:1927..2334+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCTCAGGACATCGACTGCTGTTGCCACGAGCCTGGCAACAGTGTG
TGCGAGGGTGGGTGGGCGTGTTTCTGTCGAGTCTTCGTTGTGTTTCTCCT
CCGAATGTAAAACCACAGCGGTCAGTTTATCATTCGACTCGGAATGTAAG
CCACACCTCTTATTTGTTTGTGCTTCGGCCACAGTGTTGGGGTTAGGGTT
AGGTCTGTGTATATTTTGGCAAGCAGATTTAAGTATCCTCTGCTCTGTGT
TTTTCCTCCCGCCGGGTTTTCTTGCTGGACTGTTGCGTTGCTCGCAAGCA
AGTATTTTCGCTTTGTTTTCGCGAAGACGATAAATGTTGCTCAGGACATC
GACTGCTGTTGCCACGAGCCTGGCAACAGTGTGTGCGAGGGTGGGTGGGC
GTGTTTCTGTCGAGTCTTCGTTGTGTTTCTCCTCCGAATGTAAAACCACA
GCGGTCAGTTTATCATTCGACTCGGAATGTAAGCCACACCTCTTATTTGT
TTGTGCTTCGGCCACAGTGTTGGGGTTAGGGTTAGGTCTGTGTATATTTT
GGCAAGCAGATTTAAGTATCCTCTGCTCTGTGTTTTTCCTCCCGCCGGGT
TTTCTTGCTGGACTGTTGCGTTGCTCGCAAGCAAGTATTTTCGCTTTGTT
TTCGCGAAGACGATAA
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