mRNA_L-elsbetiae_contig5812.14249.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5812.14249.1
Unique NamemRNA_L-elsbetiae_contig5812.14249.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5812.14249.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.610e-31
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 2 
Query:    8 RWGILWKPLEVRLERVDKVVQAVVRCHNFCRSRAVEVPKENV-DVVVPPVVQFDDAGRISNDYFEPQPGVGGRRAVDQASISEPREAICARLEMEAIVRPRHNMEKNSSR 334
            RWGILW+P+EVR+E+ + VV AVVR HNFCR R V+VP EN    + PP V FDD G IS+DYFE  P   GR   DQA  S+PREAI   LE+  ++RP HN+ ++  R
Sbjct:  152 RWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARSHKR 261
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BLAST of mRNA_L-elsbetiae_contig5812.14249.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 4.490e-30
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 2 
Query:    8 RWGILWKPLEVRLERVDKVVQAVVRCHNFCRSRAVEVPKENV-DVVVPPVVQFDDAGRISNDYFEPQPGVGGRRAVDQASISEPREAICARLEMEAIVRPRHNMEKNSSR 334
            RWGILW+P+EVR+E+ + VV AVVR HNFCR R V+VP EN    + PP V FDD G IS+DYFE  P   GR   DQA  S+PREAI   LE+  ++RP HN+ ++  R
Sbjct:  304 RWGILWRPMEVRIEKFEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARSHKR 413
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BLAST of mRNA_L-elsbetiae_contig5812.14249.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.730e-29
Identity = 59/110 (53.64%), Postives = 74/110 (67.27%), Query Frame = 2 
Query:    8 RWGILWKPLEVRLERVDKVVQAVVRCHNFCRSRAVEVPKENV-DVVVPPVVQFDDAGRISNDYFEPQPGVGGRRAVDQASISEPREAICARLEMEAIVRPRHNMEKNSSR 334
            RWGILW+P+EVR+E+ + VV AVVR HNFC  R V+VP EN    + PP V FDD G IS+DYFE  P   GR   DQA  S+PREAI   LE+  ++RP HN+ ++  R
Sbjct:  283 RWGILWRPMEVRIEKFEHVVNAVVRLHNFCWDRKVDVPTENTGSAIPPPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARSHKR 392
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BLAST of mRNA_L-elsbetiae_contig5812.14249.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.400e-23
Identity = 54/94 (57.45%), Postives = 64/94 (68.09%), Query Frame = 2 
Query:    8 RWGILWKPLEVRLERVDKVVQAVVRCHNFCRSRAVEVPKENVDVVVPPV-VQFDDAGRISNDYFEPQPGVGGRRAVDQASISEPREAICARLEM 286
            RWGILW+P+EVR+E+ + VV AVVR HNFCR R V+VP EN    +PP  V FDD   IS+DYFE  P   GR   DQA  S+PREAI   LE+
Sbjct:  357 RWGILWRPVEVRIEKFEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPTEVAFDDDCLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEV 450
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BLAST of mRNA_L-elsbetiae_contig5812.14249.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.490e-21
Identity = 53/109 (48.62%), Postives = 67/109 (61.47%), Query Frame = 2 
Query:   11 WGILWKPLEVRLERVDKVVQAVVRCHNFCRSRAVEVPKENV-DVVVPPVVQFDDAGRISNDYFEPQPGVGGRRAVDQASISEPREAICARLEMEAIVRPRHNMEKNSSR 334
            +GIL   + +    V+ VV AVVR HNFCR R V+VP EN    + PP V FDD G IS+DYFE  P   GR   DQA  S+PREAI   LE+  ++RP HN+ ++  R
Sbjct:  227 YGILVSVVGMAKVVVEHVVNAVVRLHNFCRDRKVDVPTENTGSAIPPPEVAFDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLMRPEHNIARSHKR 335
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BLAST of mRNA_L-elsbetiae_contig5812.14249.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.330e-17
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = 2 
Query:   11 WGILWKPLEVRLERVDKVVQAVVRCHNFCRSRAVEVPKENVDVVVPPVVQFDDAGRISNDYFEPQPGVGGRRAVDQASISEPREAICARLEMEAIVRPRHNMEKNS 328
            WGILW+PL++RLERV  V+ +VVR HNF R R   +P+    V  P  V+F   G +   YF+  P  G +    +AS   PREAI   LE  +I RPR N+++NS
Sbjct:  312 WGILWRPLDMRLERVSSVINSVVRLHNFLRRRRARIPRSPWRVTQPVEVRFRPDGSLEGTYFDTVPTRGRQTRGGRASA--PREAIRQYLEQYSIGRPRWNLQRNS 415
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BLAST of mRNA_L-elsbetiae_contig5812.14249.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.280e-15
Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 2 
Query:   11 WGILWKPLEVRLERVDKVVQAVVRCHNFCRSRAVEVPKENVDVVVPPVVQFDDAGRISNDYFEPQPGVGGRRAVDQASISEPREAICARLEMEAIVRPRHNMEKNSS 331
            WGILW+PL+V+L RV  V+ AVVR HNF R    +VP+    V  P  V+F   G +   Y++  P  G  R      +S PREAI   L+  +I RPR N+++NS+
Sbjct:  246 WGILWRPLQVKLGRVSSVMNAVVRLHNFLRRWRAKVPQSPWRVDQPQEVRFAPDGSLEGTYYDTVPTRG--RPTTGQRVSAPREAIRQYLKQYSIGRPRWNLQRNST 350
[Close]
BLAST of mRNA_L-elsbetiae_contig5812.14249.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.810e-13
Identity = 42/109 (38.53%), Postives = 56/109 (51.38%), Query Frame = 2 
Query:    8 RWGILWKPLEVRLERVDKVVQAVVRCHNFCRSRAVEVPKENVDVVVPPVVQFDDAGRISNDYFEPQPGVGGRRAVDQASISEPREAICARLEMEAIVRPRHNMEKNSSR 334
            RWGILW+P+EVR+E+ + VV                               FDD G IS+DYFE  P   GR   DQA  S+PREAI   LE+  ++RP HN+ ++ +R
Sbjct:  253 RWGILWRPMEVRIEKFEHVVA------------------------------FDDDGLISSDYFETVPVRTGRPVKDQAKASKPREAIRKELEVAGLIRPEHNIARSHNR 331
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5812.14249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KNF2_9PHAE2.610e-3154.55DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE4.490e-3054.55DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE4.730e-2953.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1X4_9PHAE1.400e-2357.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K540_9PHAE6.490e-2148.62DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE4.330e-1744.34DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE6.280e-1542.06DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE4.810e-1338.53DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5812contigL-elsbetiae_contig5812:594..1174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size581
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816625.7788496-CDS-L-elsbetiae_contig5812:593..10521622816625.7788496-CDS-L-elsbetiae_contig5812:593..1052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 594..1052 +
1691683694.4672747-CDS-L-elsbetiae_contig5812:593..10521691683694.4672747-CDS-L-elsbetiae_contig5812:593..1052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5812 594..1052 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816625.7898593-UTR-L-elsbetiae_contig5812:1052..11741622816625.7898593-UTR-L-elsbetiae_contig5812:1052..1174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5812 1053..1174 +
1691683694.4786196-UTR-L-elsbetiae_contig5812:1052..11741691683694.4786196-UTR-L-elsbetiae_contig5812:1052..1174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5812 1053..1174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5812.14249.1prot_L-elsbetiae_contig5812.14249.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5812 594..1052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5812.14249.1

>prot_L-elsbetiae_contig5812.14249.1 ID=prot_L-elsbetiae_contig5812.14249.1|Name=mRNA_L-elsbetiae_contig5812.14249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
GLEVGHPVEAARGPPGARRQGGTGGGAMPQLLPIARGGGAEGERRCRRSS
GGPVRRCRTHQQRLLRTAAGRRGQAGGGPGFHFRTERGDLRAIGNGGDRS
PAPQHGEKQLPVAGGALNSSVRAVFPRQHHARLILAYGGDVARFGASVMV
VV*
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mRNA from alignment at L-elsbetiae_contig5812:594..1174+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5812.14249.1 ID=mRNA_L-elsbetiae_contig5812.14249.1|Name=mRNA_L-elsbetiae_contig5812.14249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=581bp|location=Sequence derived from alignment at L-elsbetiae_contig5812:594..1174+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCTGGAGGTGGGGCATCCTGTGGAAGCCGCTCGAGGTCCGCCTGGAGC
GCGTAGACAAGGTGGTACAGGCGGTGGTGCGATGCCACAACTTCTGCCGA
TCGCGCGCGGTGGAGGTGCCGAAGGAGAACGTCGATGTCGTCGTTCCTCC
GGTGGTCCAGTTCGACGATGCCGGACGCATCAGCAACGACTACTTCGAAC
CGCAGCCGGGCGTCGGGGGCAGGCGGGCGGTGGACCAGGCTTCCATTTCC
GAACCGAGAGAGGCGATTTGCGCGCGATTGGAAATGGAGGCGATCGTTCG
CCCGCGCCACAACATGGAGAAAAACAGCTCCCGGTTGCAGGGGGGGCGTT
GAATTCAAGTGTTCGGGCCGTGTTTCCCCGCCAGCATCACGCCCGTTTAA
TATTAGCGTACGGTGGCGACGTAGCTCGTTTTGGAGCATCAGTGATGGTG
GTTGTATAAGAGAATATTTGCTAAGTAGTTTGAGTTGCCTGCCCCCCCCG
CTTTCGCCCCCCCCCTCCCCATAACGCAGAGTTAGGCCCTTTGGCGCATG
AATTGAGTTCTCCCGGGAGGGATGATTGTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5812:594..1174+

>mRNA_L-elsbetiae_contig5812.14249.1 ID=mRNA_L-elsbetiae_contig5812.14249.1|Name=mRNA_L-elsbetiae_contig5812.14249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig5812:594..1174+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCTGGAGGTGGGGCATCCTGTGGAAGCCGCTCGAGGTCCGCCTGGAGC
GCGTAGACAAGGTGGTACAGGCGGTGGTGCGATGCCACAACTTCTGCCGA
TCGCGCGCGGTGGAGGTGCCGAAGGAGAACGTCGATGTCGTCGTTCCTCC
GGTGGTCCAGTTCGACGATGCCGGACGCATCAGCAACGACTACTTCGAAC
CGCAGCCGGGCGTCGGGGGCAGGCGGGCGGTGGACCAGGCTTCCATTTCC
GAACCGAGAGAGGCGATTTGCGCGCGATTGGAAATGGAGGCGATCGTTCG
CCCGCGCCACAACATGGAGAAAAACAGCTCCCGGTTGCAGGGGGGGCGTT
GAATTCAAGTGTTCGGGCCGTGTTTCCCCGCCAGCATCACGCCCGTTTAA
TATTAGCGTACGGTGGCGACGTAGCTCGTTTTGGAGCATCAGTGATGGTG
GTTGTATAAGGTCTGGAGGTGGGGCATCCTGTGGAAGCCGCTCGAGGTCC
GCCTGGAGCGCGTAGACAAGGTGGTACAGGCGGTGGTGCGATGCCACAAC
TTCTGCCGATCGCGCGCGGTGGAGGTGCCGAAGGAGAACGTCGATGTCGT
CGTTCCTCCGGTGGTCCAGTTCGACGATGCCGGACGCATCAGCAACGACT
ACTTCGAACCGCAGCCGGGCGTCGGGGGCAGGCGGGCGGTGGACCAGGCT
TCCATTTCCGAACCGAGAGAGGCGATTTGCGCGCGATTGGAAATGGAGGC
GATCGTTCGCCCGCGCCACAACATGGAGAAAAACAGCTCCCGGTTGCAGG
GGGGGCGTTGAATTCAAGTGTTCGGGCCGTGTTTCCCCGCCAGCATCACG
CCCGTTTAATATTAGCGTACGGTGGCGACGTAGCTCGTTTTGGAGCATCA
GTGATGGTGGTTGTATAA
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