mRNA_L-elsbetiae_contig5811.14248.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5811.14248.1
Unique NamemRNA_L-elsbetiae_contig5811.14248.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5811.14248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5811contigL-elsbetiae_contig5811:7359..10751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816625.623002-CDS-L-elsbetiae_contig5811:7358..75631622816625.623002-CDS-L-elsbetiae_contig5811:7358..7563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5811 7359..7563 +
1691683694.3884735-CDS-L-elsbetiae_contig5811:7358..75631691683694.3884735-CDS-L-elsbetiae_contig5811:7358..7563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5811 7359..7563 +
1622816625.6347823-CDS-L-elsbetiae_contig5811:10665..107511622816625.6347823-CDS-L-elsbetiae_contig5811:10665..10751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5811 10666..10751 +
1691683694.3979695-CDS-L-elsbetiae_contig5811:10665..107511691683694.3979695-CDS-L-elsbetiae_contig5811:10665..10751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5811 10666..10751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5811.14248.1prot_L-elsbetiae_contig5811.14248.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5811 7359..10751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5811.14248.1

>prot_L-elsbetiae_contig5811.14248.1 ID=prot_L-elsbetiae_contig5811.14248.1|Name=mRNA_L-elsbetiae_contig5811.14248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
ATTISSPRLIALRFGSLSLCVSLAAQSKFSCVPLEKGSLEPTLSDRVLLL
QEENKGKRGRPGVVNTEGGSYKHEQERERERERERERPQKHGSQGSG
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mRNA from alignment at L-elsbetiae_contig5811:7359..10751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5811.14248.1 ID=mRNA_L-elsbetiae_contig5811.14248.1|Name=mRNA_L-elsbetiae_contig5811.14248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3393bp|location=Sequence derived from alignment at L-elsbetiae_contig5811:7359..10751+ (Laminarionema elsbetiae ELsaHSoW15)
GCAACAACCATTTCCAGCCCCCGTCTTATAGCGTTGCGCTTTGGCTCTCT
CTCTCTTTGTGTGTCTCTCGCAGCACAGTCGAAGTTCAGCTGTGTGCCTC
TGGAAAAAGGTAGCCTAGAGCCAACGTTGTCTGACCGAGTACTGCTGCTG
CAGGAGGAAAATAAAGGAAAGAGAGGAAGGCCGGGGGTTGTCAACACAGA
AGGAGGTGGGTTTCATGGGGCGTCTTCGGTGAGACTCCTTAGGAGTGCCC
CAGCAGAGGCACTCTATTAGCAGTTGTGCTTATAGCCGCTGAGAGGACCC
AGGGGGTAAATTGTAGAGTAAACGGGCTTAATTTAACGGGCGTGCCACGT
CTGTCTTCCACAATAACGAAAAGTCGTGCCGTGTGGGTACTTGGTACCTG
GTACCACCTCCAGATCCTAGATATATATGTTCTGTTTTTTTCTTCCAGAT
GCCCCTCTCTTCTCGCCTTCTTGCCAGCCCCACTGCCCCACTGGAGGGTT
GGTCCACTGGCACGTGTCGTGAACATTGCCAAACCTCGCAGGCTGCGCGC
ATCCTCATGGCTTGGCTCTCTGCGGGCGCTTAACTTTCTTCCGAGATGGA
TGGATACATTTTCGGGTTGCAGAACAGAATGCCTCGTCTGAGGCAACATC
AGCTGCAGACTGCTGTCATGATGTATTCATATATTTTTGTGTAGGTACAC
AAGCTGCAGAACCACATTTCCTCCTGTGTGTGTCTTGTGAAGCGCACCTG
TGTGCAGGGAGTCTCGTCGCTTGTACACCTAACGGTTTAGTTTTCGGGGT
GCATCGGGCGACCCTTTAACTTTTATGTATGTATAACATCCAGTGGGGGG
TCCGCGCAGCAATCAGTCGGTCTCATCCACGCAAAAGTTACGGCCGGTGC
TTACCGCTCGTTTTGGTATGAAACTGGCAAAATGGTCACTACCGTGTAGG
AACCGTAGTATTTAGTGCGCAAAGGCTCACGAGTGCTTGTTTGTTTGTTT
TTGTTGTTGTTGCTGTTTCTTTACACCTACTTGTAGTTACATAAATGAGC
CGCACACCAGCACCGGCTCAATACCTCGCAGTACATATTTACTCTGACCC
ACCCACCAGCACCCACCCCCGTAGACCCACGCTTCCCCCGGCAGAGTCGT
ATCGCTCCTCCCTCCTCCTAGGGTGGGTCTTGTGTGCTACCCCCTCTGTA
GCCTCTACCTCAATTTTGTATTAGATCTCCGCGTGTTGTGTACATCTAAA
TATTCCATTTGTTTGTTCTTTCACTCCCAAAGATAGTTTGATTCTGTCCC
GGGTCTCCGAAATATATTTGGACAAACGACCGTGAAGCACGGCCATCTCT
CTTTTGGTCAGAGCACAGCTGGACAGGCGTGACGAAAATTGACGAACATT
CCCTAATTTACTTCCCCTCTCGGAAGGCAACAGATCGCGAGTCGGTGCTC
TAAGGCGTTGTTCTGGCCGAAAAAGATGGCCATTGACGGTCGTTATTTTG
TTATTTTAATCAAGTTTGAGGGGCGCTCCAATACAATACACACGATCGGA
TGGACATTTTGGCCTATTTTGAATCTAGATATCTGGATAGAGCCTTTATT
TCCTCTCCTATTAGGATAAAGGGAAACAAAGGTCGCGGCTTTGCCGCTCC
GCGGCTCATGAACTAATAACCACGGCTCATGAACTAATAACCAGTTCCGA
TCTCTCCACCCAGTACCTCTCCAATTTACAGATCTACATATATATGAGCG
TACTATTCCATCAGCACTTGATGCGGTCAATTCCCGTGGTCAAAGGCTCT
GCTGATACCTACCTAAAAAAAGTAGTTTGTGCAAATGCTCCACCCTTGAA
ATGACTCTATATTAACCTACGTGCCTCCATGGCTGTGCCGAAAAACCGAG
CGATTTCGTGAATTCCTTTGACGGCCGACAGCCGCGTGATGAAGTTTGCT
TGCTGCTGAGGGGCAAAACACGCAGCAGCAAACGAACATAAAATAGACCC
GAACCAAGGGTCAGCAAAGCGATAAAAAAAGTTCAAGACGAATTGTTGTG
CGGAGCCCCCCGCTCCCATCTACACTCGCTTATAATGCGGGGTGAAAACA
AACAGGACAAACCAACATCACCACCCCCTGGTTCTATCTTGGCACCCTAA
CAATGCCAGGATGTTCCGTGCCGGGTTCTCGCCGGTCAGGCCCACAAATC
AGCCAGTCCTCCCCACCGATTAGATATACCGCCCACCACGTGGTAGAAGA
ACCAAGAGAGGGCAAAAAGGACCTCGGGCAAGACAAGACGCAAGCCGAAA
GTACAAACACATAAGCAGACACACAAACACCCATAAGCCCCAGACAAGAT
GAGAAACAAACACGTCATCACTCCCCCGGTGGTGGTGGGTGCAAGATGGT
ACAAGCAGTGGGGGGGGGGGGAGACTAGCCGAGAATTGATTCAATCCGCA
ACATGTCGCGCCACTGCGTCCGCTTCCGCCCCCCTCTTGCGTATGTCGCG
TGCAGTTTACGGTACACGAAAGCCCCCTTCCCTTGAGAACGCCCGGGGCG
TTCTTTTTTCGCTCCTATTTTCCGATCCCCCTATGGGGCGAGGTCGCACA
CGGAACTGGCAGTTCGCGTTCCAGCAGCACTGAACTGCTGTTTCGTTGTT
TGTTGTTGTTGAGGGCTATGTTGGCATTTTTGCTCGAAAATAGTTGTTAT
TTATCCCGAACGTCGTTATGTTGCCAAAGTGCATTTGGATGTGTTGTCGA
GAGGTAAGAAAATATTACCCCCGCCCCCGGGGGGCTTGTCGCCCCGAGGA
TTTTTCTTTTTTTGCGTGAAAAGACCCCCCCGCAACTTCGAGGTCGCCTC
GCCGAGGCGTTTTCTTTTTGACCTCAAGATTTTCGAACGCACCCCCCCCG
GGGCGCTCTCAAGAAGAGATGCCGCGCGGCTTGCGACCGGCTGCTGCGGA
AGCCAGATATATGCCATTTGTCAAGTCAACCAGAGGGTGGGGGCGGCACC
GCAAGGCGAACCCTCGCTCGCGTATGTATGCCGGCAGACCTTCGTCCGTC
CCACATACCGTCTCGCAACCCCACCCTGCTGCTAAATATAGGTGTACATA
TAACGGCGCGCGTGTGGATATGTACAGAGCCCGTGACGCAACTTTCTGAC
CCCTGCCGCTGCTCCGCTCTCATCATGCCGCGCGCGGTGTTGCTGCCTGC
TGTTTTGCCCTTGTTCCCCGCCACCGTCGCCGCCTTCGCCTTCGCCTTCG
CGCAAAAAAAAAACAAAATCGACGGACGGATGGACGGATGCCTTGTCGTC
ACGTCAGGATCTTACAAGCACGAGCAGGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGGCCCCAAAAGCATGGCTCCCAAGGCAGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5811:7359..10751+

>mRNA_L-elsbetiae_contig5811.14248.1 ID=mRNA_L-elsbetiae_contig5811.14248.1|Name=mRNA_L-elsbetiae_contig5811.14248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig5811:7359..10751+ (Laminarionema elsbetiae ELsaHSoW15)
GCAACAACCATTTCCAGCCCCCGTCTTATAGCGTTGCGCTTTGGCTCTCT
CTCTCTTTGTGTGTCTCTCGCAGCACAGTCGAAGTTCAGCTGTGTGCCTC
TGGAAAAAGGTAGCCTAGAGCCAACGTTGTCTGACCGAGTACTGCTGCTG
CAGGAGGAAAATAAAGGAAAGAGAGGAAGGCCGGGGGTTGTCAACACAGA
AGGAGGCAACAACCATTTCCAGCCCCCGTCTTATAGCGTTGCGCTTTGGC
TCTCTCTCTCTTTGTGTGTCTCTCGCAGCACAGTCGAAGTTCAGCTGTGT
GCCTCTGGAAAAAGGTAGCCTAGAGCCAACGTTGTCTGACCGAGTACTGC
TGCTGCAGGAGGAAAATAAAGGAAAGAGAGGAAGGCCGGGGGTTGTCAAC
ACAGAAGGAGGATCTTACAAGCACGAGCAGGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGGCCCCAAAAGCATGGCTCCCAAGGCAGCGGCGATC
TTACAAGCACGAGCAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GGCCCCAAAAGCATGGCTCCCAAGGCAGCGGC
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