mRNA_L-elsbetiae_contig58.14226.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig58.14226.1
Unique NamemRNA_L-elsbetiae_contig58.14226.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig58.14226.1 vs. uniprot
Match: D7FLT0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT0_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 7.900e-42
Identity = 91/164 (55.49%), Postives = 112/164 (68.29%), Query Frame = 1 
Query:    4 LMALAFVCPCFGRFVPEKLKSA-----PVMKATVSNHDKDIMKMRAFKAASEEMGENAGEIEMLKRVDEITDKLLREAFPDAYTLAPKKK-RAVDSPDIWENGTIVRYMAGAMILLLAAGGLYAWWDPREVAAPDRTKFIRATP---AVPSAAAKATSNSRKTR 468
            L+A+A VCP   +    K   A       M ATVS  DK++ KMRA+KAA +EMGE+A E+ MLKRV+EITDKLLRE+FPDAY  AP K+ +AVDS D+WENGT+VRY+A  M LLLAA GLYAW D      PDRT  I+ TP   + PSA + + S+SRK R
Sbjct:   11 LIAIALVCPSCAKGFGRKRTMARQGDQEPMAATVSTRDKELAKMRAYKAAVQEMGEDADELAMLKRVEEITDKLLRESFPDAYKPAPAKRPKAVDSDDVWENGTVVRYLARVMALLLAAAGLYAWNDKDVREKPDRT--IKDTPPRSSRPSARSSSASDSRKMR 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig58.14226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLT0_ECTSI7.900e-4255.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig58contigL-elsbetiae_contig58:54822..58970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001380.1
Exons4
Model size1110
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig58.14226.1prot_L-elsbetiae_contig58.14226.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig58 55461..58964 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.8101878-UTR-L-elsbetiae_contig58:54821..554601622816622.8101878-UTR-L-elsbetiae_contig58:54821..55460Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig58 54822..55460 -
1691683692.1635647-UTR-L-elsbetiae_contig58:54821..554601691683692.1635647-UTR-L-elsbetiae_contig58:54821..55460Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig58 54822..55460 -
1622816622.874113-UTR-L-elsbetiae_contig58:58964..589701622816622.874113-UTR-L-elsbetiae_contig58:58964..58970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig58 58965..58970 -
1691683692.2192273-UTR-L-elsbetiae_contig58:58964..589701691683692.2192273-UTR-L-elsbetiae_contig58:58964..58970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig58 58965..58970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.8242822-CDS-L-elsbetiae_contig58:55460..556701622816622.8242822-CDS-L-elsbetiae_contig58:55460..55670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 55461..55670 -
1691683692.1755083-CDS-L-elsbetiae_contig58:55460..556701691683692.1755083-CDS-L-elsbetiae_contig58:55460..55670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 55461..55670 -
1622816622.8362062-CDS-L-elsbetiae_contig58:56362..564701622816622.8362062-CDS-L-elsbetiae_contig58:56362..56470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 56363..56470 -
1691683692.1855454-CDS-L-elsbetiae_contig58:56362..564701691683692.1855454-CDS-L-elsbetiae_contig58:56362..56470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 56363..56470 -
1622816622.8484275-CDS-L-elsbetiae_contig58:57336..574481622816622.8484275-CDS-L-elsbetiae_contig58:57336..57448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 57337..57448 -
1691683692.1968007-CDS-L-elsbetiae_contig58:57336..574481691683692.1968007-CDS-L-elsbetiae_contig58:57336..57448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 57337..57448 -
1622816622.8611612-CDS-L-elsbetiae_contig58:58929..589641622816622.8611612-CDS-L-elsbetiae_contig58:58929..58964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 58930..58964 -
1691683692.208176-CDS-L-elsbetiae_contig58:58929..589641691683692.208176-CDS-L-elsbetiae_contig58:58929..58964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 58930..58964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig58.14226.1

>prot_L-elsbetiae_contig58.14226.1 ID=prot_L-elsbetiae_contig58.14226.1|Name=mRNA_L-elsbetiae_contig58.14226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
MALAFVCPCFGRFVPEKLKSAPVMKATVSNHDKDIMKMRAFKAASEEMGE
NAGEIEMLKRVDEITDKLLREAFPDAYTLAPKKKRAVDSPDIWENGTIVR
YMAGAMILLLAAGGLYAWWDPREVAAPDRTKFIRATPAVPSAAAKATSNS
RKTR*
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mRNA from alignment at L-elsbetiae_contig58:54822..58970-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig58.14226.1 ID=mRNA_L-elsbetiae_contig58.14226.1|Name=mRNA_L-elsbetiae_contig58.14226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4149bp|location=Sequence derived from alignment at L-elsbetiae_contig58:54822..58970- (Laminarionema elsbetiae ELsaHSoW15)
GTGTTGATGGCCTTAGCTTTTGTGTGTCCATGTTTTGGTCGGTGAGTGGT
GTTGGCGAGGTGTAGAAAATTGAAAGTTACGCGATCAGATGAAGGTGGGA
GGTACTCTTCAGCGAGGTTTGGTATAGATAGTCCATCTAGTTTGTTCCGG
AGGTGGACCCAAGATCGGATTCCCACCGCAACACGCGATATTGTGTCAAC
ATCGAACACTCGCTTCCCCGGCGGGCCGACCTTTTGAACTCCTGCTTCCT
ATCGCACAGCACAGCAGTAGTATATAAGGGGTCGGTAACGTACACCCCTC
TTTGTACTGAAGAACAAGTTATTCCAGTCGGCCTCGGCCCTACGCGCTAC
ACACTGCTGTTGTAGCTGCACTCCGTTGCTCTCTCACGCGCCCGCACGCT
GTTTCCGCCAAGAGGGCGCGAGTCTCAAACAATCTGGCCTGTGTCAGCTA
TTTTCGGGCCCGAACCCCGAACCCAACCAATTGGTTCCGATATTCTCGAA
CGGCCGTTTGTGTGCACGGTCCCGCTTACCCCCTTGCCGCCGTTTGCGCT
TGGACTGCGCGACTGAGCAAATGGTATGTACGTATACATACGTATATACA
TATATATATGCATGGCAATAAGTGCCAATAGCTCCGTAGATGTGCCTCCC
CACAAACCTAAATGGAACTATGTATGACGGTTCAGTAGATTGTGCGGCCA
TGATGGTGTACATCTAGTAACAGATACGGGGACGGTGGTCGTCATGAGCA
GCCCGGCTGTTTGAGATTTCTGTCCCCTTCCGCTCGAACAGCTTGAACAG
CTGCTATTGACAAAGGCCAGTCAGCTCTTCGTGCAAACTTGCAGCAGTCT
TTCTCCTCGACGTCTGCCGGCCAAAGGCAAAAAACAGCCCTCTCTGTAAG
GTTGAGATGGCAAGCACGCACAGCCCCCCACCCGACTACATACCTCGAGA
CAGCTGAAGGCAGGACAGTTTCCCTGTAACGTTCATGGCGCGCACGGTCT
GTGATGGGCTGTCGGTTGCAAGCCAGCACGCACGCACATGGCGTTGTAAG
CGTGTTCTGGTTCTTTAGTGTGTGTGTGGCAGCTGTTGTCGTGCTGCGGT
CCCGCGCAAAAAACAGCCGACACTTCCCTCAGAAACTTCGTACAAAAGTA
AAAGTTTGACGCAACTCGAACACCAGCCAACAGCAGGTTAACAGCAGTCA
GCAAGTAATCTAGCTGTTCGTATCTTGCTGTTTTTGTAAAAGTTTTCCGG
CGTACTCAAACAACGCACACACACGCAGAAGCCGGCGCAACATTTTTTTC
GGCGTTTTTGGTTTATTTCCCCGGGTGTTAAGCTATATTTGAAATCGTTG
AAAACGCTCCCAGGTCGGGCAGAAAAGCATGCAGGTATCGGACGCTTGGT
CTGCTCTCTTGCTTCATTCACCCTCTGGAGTGTTTATCCATGAGCACGTC
TGAAAGGAAGTCTTGTATCTATAGTACATATGTATGGCACTGGATTTTAA
ACGCATGCAACGCCCCTTACAGGTTTGTCCCGGAAAAATTGAAATCAGCC
CCAGTGATGAAGGCCACCGTAAGCAACCACGACAAGGACATCATGAAGAT
GCGGGCCTTCAAGGCCGCTTCTGAGGAGATGGGGGTGCGTCTGTCATTAA
AAAAAGTTACATTTGTCTGCTCACTGCTGTGTTTTTCTTGTGAACAGACA
GGCGTGTTTCGCGCTCGCGCCGCACATGCCGTGATCTCGCGCCGTTTAGT
TGTGCCTCGATGTTTACGGTGTTGGGGGTAATGTTGCTGCATGCTCCAGT
CAGCGCAGTAGCCTAGGCTGTTGTCGTTAGAGCGCTCGTTTGTCTTGGTC
GTTGGACCGTGAAAGCGTCAAGATCGGCTATGGCGGCTCAGAAGGACTCT
CTGGGGTGTGCCGGCTCACAGCAGTGTCGCGGCTCAAACCTTAAACACGT
GAAGAGCTTCTACGCGAATTAGAAAAAAAAAACATTCGAGCTTGGCTGAA
GATCTCGATGATGATTGTCCAGGTGGTTGAAATTCCCGCGTTATCAAGGT
TTTGGTTGTTGTTGTTATTGTTGTTTATTTTTACGTAGGTATCCCTTCTC
CACGAAGCGTTGTTATGCCGTGCTGAGTTGGCTCGGTGGCGCATCCCAAA
CAAAACTAACATTCCACCGGCGGGTCTCATTCTCCTTACAACATTTTTAG
TTTTTAGATTTTAGATCAGATCGGATGCCATGGATCCACGGTGACGTCCC
AAGAGGCCGACCGAGCCCTTCAAAATCTATCGCCCGTCAAACTCACCCTC
TCCTCCCACGTTAGCACACGTTGGGCGCGGGCGGTTTGTCTCACCTGGTT
GGTGCCGTTGCCGAACCGGCTTGCCTACTTCGCTTGCTTTGCTGCTTTGC
TTGCTTGGCTTGCTTGGCTTGCTTCTCTTATTTTGCTTGCTCTGGTTGCC
TGGTTGCCTGATTGCCTGATTGCTTGATTGCTTGATTGCTCTGCTCACAG
GAGAACGCTGGTGAAATTGAGATGCTGAAGCGAGTGGACGAGATCACCGA
CAAGCTCTTGAGAGAGGCGTTTCCGGACGCCTACACACTCGCGCCAAAAA
AGAAACGGGTGAGTTGTTTGCGCATCCCCCCTGTGGACTAAACATAGCCC
CGGACGCCATGGTACTTTAGTTTTCAGATTGAGAGCACCAGATGGTTTTC
CTTGCTTGTTTTTCACAGGGAAAGGAGAAGGTGCCAGTGGTGGTGAGATG
GTGGTGGATGGGAGGTCTCAGGAGGGGCAATCCACGAAAGTGTCGACTCG
GCTTCGTAGTGCTTCCCGTACATATCAAGCAAGTTGCTCTGCTAAGAGGA
AAAGTGGACGATCTTAACTCTTGTGCCAGAAACTAGAGACACACACGACA
CACACAACACGCACATCCACATATCGAGCGAGACAGGCAGGCAGGCAGGC
AGGCAGAGATGGAGAGAGAGAGAGAGAGAGAGAGACAGAGGAGGAGAGCT
GCTCTCGGCGAGTTCGCTTTTGCCGGAAGCCGTTGATATCGCAACCAGTC
GGTTCGTTTGCCGACTCGTGATTCTCCCACACACTGCTTCCCACTACTCT
GTGCTTCGGAGCAGACTACTGCAGACAAGACACAGACCATTTAAACGAGG
TGCCTCCAGGCCCCCTGAATCTAATACTCGGTTAGTACGGCGGATTTCCT
GCTGCTGCTGCTGCTGCCGCTGCTGCTTGGTCTGCAGCTGTGGTCACGCG
CGCCCTTTCTTGCCTCGCGCTTTTTTTTCCCGTTGCAAAAAATACCAAAG
GCGGTGGACAGCCCGGATATCTGGGAAAATGGGACGATCGTCCGCTACAT
GGCCGGCGCGATGATTCTCCTTCTGGCGGCCGGGGGGCTGTATGCTTGGT
GGGACCCGAGGGAGGTGGCAGCGCCAGACCGCACCAAGTTCATCAGGGCA
ACGCCAGCAGTGCCATCCGCGGCGGCGAAGGCGACCTCCAACTCGAGGAA
GACGCGGTAGAACATGTAGTTGTTGGTGTTGTCTTCGCATTAGAAACCGT
TCCGATATCTCTACCCAGTACCTTCATCTGTCCATACTACTACCTGCATG
GATTCGTACCTCCACCTGTCCGTTCTAATCCATGAACATGTAGAGGGTTG
GGATATTTCTGGCGGTAACGGTATTTTTAGTACGAAGTATTTGTCTAGAC
GCGCGTTGTGGCACCACCGTAGCAGCTCGTCTTGAGTTCGTCTGGCGCAG
AGGATCAACTTTCACGCAGCATGTGATTCTCAGTCACGGGGGGGAGAGGG
GAGGGGAAGGTGTACCGACTAACTGGTGTGTTGGTGTTGCCGAAGAGGTA
TATGGCGAAATCTGGTGATTTATAAGATCTCCCGTGTGTGTATCCTCCCC
GCGGGGAGAACGGGGTCCGCGGCGGAGTTGGAATAGAGAAATGGCACTAA
ATGATTGGCAAGTAATAATCAGTGTACAGCAGTATCAGGTGTAGTGAGAC
CACTGGGCCAGAGGATGAAGACCGTCGTAAAGCTTGCCTCACGTCCACAG
GCATAGCTGATGTGTTTGTTCATGAGGTCTGTTATGTACCTACTAGAGTA
TAGCATGTTTTTTCCAATTCTTGAATTGAAATCGGTCTCTGCTGCGACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig58:54822..58970-

>mRNA_L-elsbetiae_contig58.14226.1 ID=mRNA_L-elsbetiae_contig58.14226.1|Name=mRNA_L-elsbetiae_contig58.14226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig58:54822..58970- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTTAGCTTTTGTGTGTCCATGTTTTGGTCGATGGCCTTAGCTTTT
GTGTGTCCATGTTTTGGTCGGTTTGTCCCGGAAAAATTGAAATCAGCCCC
AGTGATGAAGGCCACCGTAAGCAACCACGACAAGGACATCATGAAGATGC
GGGCCTTCAAGGCCGCTTCTGAGGAGATGGGGGTTTGTCCCGGAAAAATT
GAAATCAGCCCCAGTGATGAAGGCCACCGTAAGCAACCACGACAAGGACA
TCATGAAGATGCGGGCCTTCAAGGCCGCTTCTGAGGAGATGGGGGAGAAC
GCTGGTGAAATTGAGATGCTGAAGCGAGTGGACGAGATCACCGACAAGCT
CTTGAGAGAGGCGTTTCCGGACGCCTACACACTCGCGCCAAAAAAGAAAC
GGGAGAACGCTGGTGAAATTGAGATGCTGAAGCGAGTGGACGAGATCACC
GACAAGCTCTTGAGAGAGGCGTTTCCGGACGCCTACACACTCGCGCCAAA
AAAGAAACGGGCGGTGGACAGCCCGGATATCTGGGAAAATGGGACGATCG
TCCGCTACATGGCCGGCGCGATGATTCTCCTTCTGGCGGCCGGGGGGCTG
TATGCTTGGTGGGACCCGAGGGAGGTGGCAGCGCCAGACCGCACCAAGTT
CATCAGGGCAACGCCAGCAGTGCCATCCGCGGCGGCGAAGGCGACCTCCA
ACTCGAGGAAGACGCGGTAGGCGGTGGACAGCCCGGATATCTGGGAAAAT
GGGACGATCGTCCGCTACATGGCCGGCGCGATGATTCTCCTTCTGGCGGC
CGGGGGGCTGTATGCTTGGTGGGACCCGAGGGAGGTGGCAGCGCCAGACC
GCACCAAGTTCATCAGGGCAACGCCAGCAGTGCCATCCGCGGCGGCGAAG
GCGACCTCCAACTCGAGGAAGACGCGGTAG
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