mRNA_L-elsbetiae_contig58.14224.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig58.14224.1
Unique NamemRNA_L-elsbetiae_contig58.14224.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig58.14224.1 vs. uniprot
Match: D7G6Q8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Q8_ECTSI)

HSP 1 Score: 369 bits (948), Expect = 7.450e-122
Identity = 204/264 (77.27%), Postives = 223/264 (84.47%), Query Frame = 1
Query:   40 MRC-ASAAAFVMALCCCQRAGGFLAPAP--ARGVSSRGA--RVSMSGHSPGPTSRGDAIAAAAAGLLATVAGVSAAGAAT-IPEALPACPTEGNCVSSTSFKLVMQGRYMAPWSYTGDTKDASEAFSKLLKAVENDPQLKLVDQDAEGLYISATAKSAVPPDGLDKVEFLFKPEDGLVSFRSKSLKSVFAGPVMVGDGGSNRNRQGRVLVLEALRKKLGWPENGIDNYMRDQGIDSGTSRAKGYLSELGWRQGETQSYGEEDEY 813
            MRC +SA+  V++  CC    GF++P    A+  SSRG    V+M+  S GPTSRG AIAAAAAGLLATV GVSAAGA T +PE+LPACPTEGNCVSSTSFKLVMQGRYMAPWSYTGD+KDAS AF+KLLKAVENDPQLKLVDQDA+ LYISA AKSAVPPDG DKVEFLFKP DGLVSFRSKSLK+V+AGPV+VGDG SNRNR      LEALRKKLGWPE GIDNYMRDQGIDSGTSRAKGYLSE GWR+ E+QSYGEEDEY
Sbjct:    1 MRCFSSASLLVVSATCCH---GFVSPGAVVAKQASSRGRVQAVTMAAESSGPTSRGQAIAAAAAGLLATVGGVSAAGAGTTVPESLPACPTEGNCVSSTSFKLVMQGRYMAPWSYTGDSKDASVAFAKLLKAVENDPQLKLVDQDADALYISAMAKSAVPPDGFDKVEFLFKPSDGLVSFRSKSLKNVYAGPVIVGDGNSNRNR------LEALRKKLGWPEEGIDNYMRDQGIDSGTSRAKGYLSEFGWRKVESQSYGEEDEY 255          
BLAST of mRNA_L-elsbetiae_contig58.14224.1 vs. uniprot
Match: A0A7S3XUK8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUK8_HETAK)

HSP 1 Score: 132 bits (333), Expect = 1.340e-31
Identity = 71/163 (43.56%), Postives = 108/163 (66.26%), Query Frame = 1
Query:  277 LPACPTEGNCVSSTSFKLVMQGRYMAPWSY--TGDTKDASEAFSKLLKAVENDPQLKLVDQDAEGLYISATAKSAVPPDGLDKVEFLFKPEDGLVSFRSKSLKSVFAGPVMVGDGGSNRNRQGRVLVLEALRKKLGWPENGIDNYMRDQGIDSGTSRAKGYLS 759
            L ACP +GNC+S++S + +   ++ +PW++  TGD+ D  EA+SKL+K ++ DP LKL + D E  Y+ ATAKSA+PP GLD +EFL +PED + ++R+ S ++V+ GPV++GDGG+N+NR      L+ LR +L W   G     + +G+D    R KG  S
Sbjct:   87 LAACPNQGNCLSTSSIRSL--DKFSSPWTFENTGDSID--EAWSKLVKIIKEDPLLKLEELDNEKFYLRATAKSAIPPTGLDDLEFLLRPEDKIATYRTASREAVYVGPVLLGDGGANQNR------LDKLRYQLKWDVVGAGPVEQQKGLD----RLKGSTS 235          
BLAST of mRNA_L-elsbetiae_contig58.14224.1 vs. uniprot
Match: A0A7S0QPZ6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QPZ6_9CRYP)

HSP 1 Score: 100 bits (248), Expect = 1.460e-19
Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  286 CPTEGNCVSSTSFKLVMQGRYMAPWSYTGDTKDASEAFSKLLKAVENDPQLKLVDQDAEGLYISATAKSAVPPDGLDKVEFLFKPEDGLVSFRSKSLKSVFAGP--VMVGDGGSNRNRQGRVLVLEALRKKLGWPE 687
            C T+ NCVS ++ K   Q  ++APW YT  T  A+ A+  LL AVE DP L++V  +    Y+ A AKS VP DG D VEFL  P + +V++RS S ++V+  P  V + DGG  R R      +  L ++LGW E
Sbjct:  121 CQTQANCVSVSANKNPTQ--FVAPWDYTVKTGSAAAAWKALLAAVERDPSLRVVQVNDTAFYLRAEAKSKVPQDGTDDVEFLLIPSEKIVTYRSASRQNVYIYPYQVAIPDGGYQRQR------MRGLLQELGWVE 248          
BLAST of mRNA_L-elsbetiae_contig58.14224.1 vs. uniprot
Match: A0A7S1HAM6_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HAM6_HEMAN)

HSP 1 Score: 99.4 bits (246), Expect = 4.170e-19
Identity = 55/136 (40.44%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  286 CPTEGNCVSSTSFKLVMQGRYMAPWSYTGDTKDASEAFSKLLKAVENDPQLKLVDQDAEGLYISATAKSAVPPDGLDKVEFLFKPEDGLVSFRSKSLKSVFAGPVM--VGDGGSNRNRQGRVLVLEALRKKLGWPE 687
            C  + NCVS ++ K   Q  ++APW YT  T DA  A+  L   + +DP LK+VD D   LY+ A   S +P  G+D VEFLF PE+ +V+ RS S  + F  P    + DGG  + R      ++ +RKKLGW E
Sbjct:  159 CSAQANCVSVSAQKNPSQ--FIAPWDYTVTTNDAGAAWKLLKGTIGDDPSLKIVDVDDAALYLRAEGTSKIPKGGVDDVEFLFVPEEKIVTIRSGSRDNQFVYPYQQPIPDGGYQKER------MDGIRKKLGWVE 286          
BLAST of mRNA_L-elsbetiae_contig58.14224.1 vs. uniprot
Match: W7TWW3_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWW3_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.820e-19
Identity = 57/136 (41.91%), Postives = 80/136 (58.82%), Query Frame = 1
Query:  286 CPTEGNCVSSTSFKLVMQGRYMAPWSYTGDTKDASEAFSKLLKAVENDPQLKLVDQD--AEGLYISATAKSAVPPDGLDKVEFLFKPEDGLVSFRSKSLKSVFAGPVM--VGDGGSNRNRQGRVLVLEALRKKLGW 681
            C +  NC+SSTS       +YM+PW + G  +D   A+  L++AVE    LK+V+ D  ++  Y+ A A S VPP G+D +EFL  P+DGLV FRS S +  F  P+   VGDGGS + R      LE ++K +GW
Sbjct:  125 CLSAENCISSTSVNN--PSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKR------LETIQKAVGW 252          
BLAST of mRNA_L-elsbetiae_contig58.14224.1 vs. uniprot
Match: M1VGZ3_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VGZ3_CYAM1)

HSP 1 Score: 95.5 bits (236), Expect = 7.990e-19
Identity = 57/139 (41.01%), Postives = 82/139 (58.99%), Query Frame = 1
Query:  271 EALPACPTEGNCVSSTSFKLVMQGRYMAPWSYTGDTKDASEAFSKLLKAVENDPQLKLVDQDAEGLYISATAKSAVPPDGLDKVEFLFKPEDGLVSFRSKSLKSVFAGPVM--VGDGGSNRNRQGRVLVLEALRKKLGW 681
            ++L +C +E NCVSS++    +  +Y APWSY   T    EA+S L  AV  +P + +  ++ +G Y+ ATA S  PP G D +EFL +PE+ LV +RS+S K  +  P    +GD GSNR R      LE +R +LGW
Sbjct:   69 KSLGSCGSEENCVSSSAIGSPV--KYGAPWSYATVTDSPREAWSALEAAVRAEPGVAV--REVDGFYLHATAPSVFPPGGEDDIEFLLRPEEKLVLYRSRSQKVTYIYPFHQPLGDFGSNRKR------LERIRDRLGW 197          
BLAST of mRNA_L-elsbetiae_contig58.14224.1 vs. uniprot
Match: A0A7J7II66_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7II66_9RHOD)

HSP 1 Score: 93.6 bits (231), Expect = 3.720e-18
Identity = 55/138 (39.86%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  274 ALPACPTEGNCVSSTSFKLVMQGRYMAPWSYTGDTKDASEAFSKLLKAVENDPQLKLVDQDAEGLYISATAKSAVPPDGLDKVEFLFKPEDGLVSFRSKSLKSVFAGPVM--VGDGGSNRNRQGRVLVLEALRKKLGW 681
            AL  C  E NC+SST+  +    +Y  PWSY   T D  EA+S L  AV  +P L++  Q  +  Y+ AT  S  PP G+D +EFL +P D +V +RS S K  +  P +  +GD G+N+ R      LE +R +LGW
Sbjct:   70 ALAKCAAEDNCISSTA--VGNPSKYGPPWSYAKATADPGEAWSSLEAAVRAEPGLEV--QKVQKYYLYATGPSVFPPGGVDDIEFLMRPMDEVVLYRSSSRKVTYVYPFLQPLGDFGTNKAR------LERIRNRLGW 197          
BLAST of mRNA_L-elsbetiae_contig58.14224.1 vs. uniprot
Match: A0A4D9D6F4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6F4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.950e-16
Identity = 49/115 (42.61%), Postives = 69/115 (60.00%), Query Frame = 1
Query:  349 MAPWSYTGDTKDASEAFSKLLKAVENDPQLKLVDQD--AEGLYISATAKSAVPPDGLDKVEFLFKPEDGLVSFRSKSLKSVFAGPVM--VGDGGSNRNRQGRVLVLEALRKKLGW 681
            M+PW + G  +D   A+  L++AVE    LK+V+ D  ++  Y+ A A S VPP G+D +EFL  P+DGLV FRS S +  F  P+   VGDGGS + R      LE ++K +GW
Sbjct:    1 MSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKR------LETIQKSVGW 109          
BLAST of mRNA_L-elsbetiae_contig58.14224.1 vs. uniprot
Match: D8LT63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT63_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.060e-16
Identity = 53/134 (39.55%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  286 CPTEGNCVSSTSFKLVMQGRYMAPWSYTGDTKDASEAFSKLLKAVENDPQLKLVDQDAEGLYISATAKSAVPPDGLDKVEFLFKPEDGLVSFRSKSLKSVFAGPVM--VGDGGSNRNRQGRVLVLEALRKKLGW 681
            C +  NC+S+++ K+   G+  +PW Y   T DA  AF+ L+ AVE   +  +   D EG YI A   S VPP  +D VEFL KPED +V +RS S  ++F  P+   V D G  + R      LE +R  LGW
Sbjct:  134 CSSSENCLSTSAVKV--PGKLGSPWEYAMRTDDADTAFASLVHAVERTSEATMKIVDREGHYILAEFPSKVPPGSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKER------LEGIRNDLGW 259          
BLAST of mRNA_L-elsbetiae_contig58.14224.1 vs. uniprot
Match: A0A7S0CBW6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CBW6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.650e-13
Identity = 50/125 (40.00%), Postives = 66/125 (52.80%), Query Frame = 1
Query:  343 RYMAPWSYTGDTKDASEAFSKLLKAVENDPQLKLVD-QDAEGLYISATAKSAVPP-----DGLDKVEFLFKPEDGLVSFRSKSLKSVFAGPVM--VGDGGSNRNRQGRVLVLEALRKKLGWPENG 693
            R+  PW+Y  +T D   A+  L+ AV N  Q   V+  +    Y+ ATAK+  PP     D LD +EFL +P+D LV +RS S  SVF  P+   V D  SN  R      LE +R+ LGW E G
Sbjct:   93 RFSPPWTYLTETSDPQVAWKSLINAVNNVDQFGKVEIVELTNNYLHATAKTVSPPGLTGEDALDDLEFLLRPDDNLVLYRSSSRISVFVYPLTQPVSDRNSNLKR------LERIRETLGWEEMG 211          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig58.14224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G6Q8_ECTSI7.450e-12277.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3XUK8_HETAK1.340e-3143.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0QPZ6_9CRYP1.460e-1941.91Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S1HAM6_HEMAN4.170e-1940.44Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
W7TWW3_9STRA5.820e-1941.91Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
M1VGZ3_CYAM17.990e-1941.01Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
A0A7J7II66_9RHOD3.720e-1839.86Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A4D9D6F4_9STRA1.950e-1642.61Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D8LT63_ECTSI2.060e-1639.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0CBW6_9STRA5.650e-1340.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig58contigL-elsbetiae_contig58:38695..45395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue1.7e-17
Seed eggNOG ortholog45157.CMI167CT
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
EggNOG OGs28JPF@1,2QS2R@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionProtein of unknown function DUF1499
Ec32 orthologEc-26_000490.1
Exons6
Model size1808
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig58.14224.1prot_L-elsbetiae_contig58.14224.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig58 39687..45356 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.5621998-UTR-L-elsbetiae_contig58:38694..396861622816622.5621998-UTR-L-elsbetiae_contig58:38694..39686Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig58 38695..39686 -
1691683691.9520826-UTR-L-elsbetiae_contig58:38694..396861691683691.9520826-UTR-L-elsbetiae_contig58:38694..39686Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig58 38695..39686 -
1622816622.6385427-UTR-L-elsbetiae_contig58:45356..453951622816622.6385427-UTR-L-elsbetiae_contig58:45356..45395Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig58 45357..45395 -
1691683692.0380414-UTR-L-elsbetiae_contig58:45356..453951691683692.0380414-UTR-L-elsbetiae_contig58:45356..45395Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig58 45357..45395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.575355-CDS-L-elsbetiae_contig58:39686..398521622816622.575355-CDS-L-elsbetiae_contig58:39686..39852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 39687..39852 -
1691683691.964406-CDS-L-elsbetiae_contig58:39686..398521691683691.964406-CDS-L-elsbetiae_contig58:39686..39852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 39687..39852 -
1622816622.5863888-CDS-L-elsbetiae_contig58:40787..409011622816622.5863888-CDS-L-elsbetiae_contig58:40787..40901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 40788..40901 -
1691683691.9748204-CDS-L-elsbetiae_contig58:40787..409011691683691.9748204-CDS-L-elsbetiae_contig58:40787..40901Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 40788..40901 -
1622816622.5964453-CDS-L-elsbetiae_contig58:41839..419671622816622.5964453-CDS-L-elsbetiae_contig58:41839..41967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 41840..41967 -
1691683691.9932325-CDS-L-elsbetiae_contig58:41839..419671691683691.9932325-CDS-L-elsbetiae_contig58:41839..41967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 41840..41967 -
1622816622.6069138-CDS-L-elsbetiae_contig58:43019..430971622816622.6069138-CDS-L-elsbetiae_contig58:43019..43097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 43020..43097 -
1691683692.0068693-CDS-L-elsbetiae_contig58:43019..430971691683692.0068693-CDS-L-elsbetiae_contig58:43019..43097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 43020..43097 -
1622816622.6181376-CDS-L-elsbetiae_contig58:43693..438551622816622.6181376-CDS-L-elsbetiae_contig58:43693..43855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 43694..43855 -
1691683692.0160244-CDS-L-elsbetiae_contig58:43693..438551691683692.0160244-CDS-L-elsbetiae_contig58:43693..43855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 43694..43855 -
1622816622.6284745-CDS-L-elsbetiae_contig58:45227..453561622816622.6284745-CDS-L-elsbetiae_contig58:45227..45356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 45228..45356 -
1691683692.0271595-CDS-L-elsbetiae_contig58:45227..453561691683692.0271595-CDS-L-elsbetiae_contig58:45227..45356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 45228..45356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig58.14224.1

>prot_L-elsbetiae_contig58.14224.1 ID=prot_L-elsbetiae_contig58.14224.1|Name=mRNA_L-elsbetiae_contig58.14224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=259bp
MRCASAAAFVMALCCCQRAGGFLAPAPARGVSSRGARVSMSGHSPGPTSR
GDAIAAAAAGLLATVAGVSAAGAATIPEALPACPTEGNCVSSTSFKLVMQ
GRYMAPWSYTGDTKDASEAFSKLLKAVENDPQLKLVDQDAEGLYISATAK
SAVPPDGLDKVEFLFKPEDGLVSFRSKSLKSVFAGPVMVGDGGSNRNRQG
RVLVLEALRKKLGWPENGIDNYMRDQGIDSGTSRAKGYLSELGWRQGETQ
SYGEEDEY*
back to top

mRNA from alignment at L-elsbetiae_contig58:38695..45395-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig58.14224.1 ID=mRNA_L-elsbetiae_contig58.14224.1|Name=mRNA_L-elsbetiae_contig58.14224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6701bp|location=Sequence derived from alignment at L-elsbetiae_contig58:38695..45395- (Laminarionema elsbetiae ELsaHSoW15)
CGGCTGCCCCTGCGGTGTTATTCCCGTGTGCCTGGAACGATGCGCTGTGC CTCGGCTGCCGCGTTCGTCATGGCCTTGTGCTGCTGCCAAAGGGCCGGCG GTTTCTTGGCACCAGCACCAGCACGAGGCGTGAGCTCACGAGGGGCCCGA GTGTCCATGTCCGGTCATGTGAGTTGCTGTCATGTGGTCATGTTGTCTAC TGCTACTCTTCTAGACGAAGCGCCTCTCGCCACCACTGTTGTATATTGTG TACACGGCTGCATCCATGAGGCATGCGGTGATTTCGTCTTCTGGTGGCTG TAGGGTGTGGAGGACAAAGTGAGTTCCGTCTGTTGCTGTACTGTACATAC ATACATACACACACAGCAAGAGAGAGTACATACGATCACCCTCAACGTAC GCGCGTTTCTGTGCCTGCGGCTGCCGTGTTGTGCACAACGCTGTGTTGGT GGCGGTGTGCCATGGCCCTGTGTTAAGGCGGCCAAGAACCTAGAAAGGAG GCTTGCGTGCCAGAAAGAGAAATGGCGAGGAAGTGTAGTCACTGCTGTTG CCAGAGTGAACATGCCGCCTTTTGCTCTCGCGGCCAACACACGCTGTTGG TTCTTTTGTGAGGAAGGACAGGCCAAAGCATAGCCTAGTCTTCTGATGGG CCCGACCGTTGTGGATGCTCATTTCGTTACAGCAACGAAAACTTGCTTGA GCAATATATGTATGCAAGCGCTTGCGTTGCGGGTAAAGGGGGCCCGTGAG GCGTTAGCTTGTTAGAGCATGGGTCATCACAGCAGTCGAAGATATGACCC CTTCGAGTGTGGTGTGAGAGAGATCCTCGCGCCTCACTTCATGCAGCTCA TGATTGTCTCCACAACTTTGAAAGTGTGCGCTTTTGTCGAAGGAGGTCGG TGGCGTAGGTAGGACCAAATGCGACCGCACGCACGGGACCACCCGAGTGA CTGCGAAACCGAGCACCCCCCAGGCGAAATAAACCCTTTTAACTCAGCTT TCGAACAACGTAGCAACTACAGCTCCCCGCGTACCGTAGGTGACACAAGA TACCACACACCGTGGGACAGATTTTCAAAGCTCGAGTACTCCCCAGCAAG GAGAGTGACAGTAGTGCCGAAAGGAGGTGGCGTTGCAAAAATCTAGTCGA GGGCTGTCCGAAAATGTGTCGTTTGGTGCTGGCACCCTCTTCGTTACGGA GTACTGGAGCTCTAAAAGTCGGTCCAGGGGGGGGTGGTATCTTGTGTCAC CTGCGGTAAGCACGCCCATGATTTCCCCATCCCCTCTGGGGGATCAGTGC TGTCGAAAAAACTCCAAGTGTAGGTGATTGGTTGCCTCTTACGCGGCGTG GAGATCCGTTCCTCGAGGCGAAGACACTGCTTTGTCCATGGTCTCAACGA CTCTTAATCCACGCGAGCGGCAACTCACCTCCCCCGCCCCCTCAACCTGA ACGCCACGAAGACGCGATTGCTCGTATTATTAACACTCCTGTGTTGTGCC CTTCCTTCCCCGTCCCCATCCAACATCGACACCGCAAAAGTCACCAGGGC CGACGAGCCGGGGAGACGCAATCGCGGCGGCGGCGGCGGGTTTGCTGGCG ACCGTTGCAGGCGTTTCGGCGGCAGGGGCGGCGACGATCCCGGAGGCGCT GCCCGCCTGTCCCACGGAGGGGAACTGCGTTAGCTCCACCTCATTCAAGC TGGTGAGGAACTGTTGCTGTTGTTGTTATTTGCTGTTTGCTGATGCTGTC GGTACTGCTGTTGCTGGTGTGTTGTTGTCGGTGTCTGCTGCTGCTGCTGC TGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTTGCTGCTGTTGCTGATGTA TTGCTGGTGTTGGGGCGTGTGAACAAACAGGCGGTGATTCGGAATGTCGT GCAAAACCGTCACACGATGATAATAAAAGCAAATGTGCGAAACAACACAC GCTGCTGACCGTGTTTTGCTATTGTTGCTAATTTCTAAATTCTCCTAAAA TAAAATAGTGCTGACAATGGTCGACTTTTGGGGTTGCTTGGCTGCGTGTG AGCGGGGGCGTGGGGTGGCTGTTTCCCAACAATATATCTACTCTTGAGTA CTCGCCACAAGGTGACAGTGACTAAATTTTGTTGCATTGCTGTGAGTTAA ACAACATGGTAAATAGAAGGCTTGGTTGTATGTATTGTGACTCCAGGCAA GAGACCGCATGCATCCGTTTCTTGTGTGTTGGGGTAGATGTGTGCTTTCA TTCAAAAAGTTGCTTGTTTCCTTCTGGTGCCTGGTCCCCATGTGTCAGGT AATGCAAGGGCGATACATGGCGCCTTGGTCGTACACGGGAGACACCAAAG ACGCCTCTGAGGCGTTCTCCAAACTCGTGAGTGTCTTGTGTCTATTGCAA GGTACACATCCTTTGTGCACGACAACACAACTACGCCAACACCTCAATGT CGCCACCTTCATTCCCCTGCCCCCTATTTCGGCAATTCTGCGCCCATTCG CTCAAACATCCCCCTCCCCGCTCCTTGCAACTGATGTGGCAGATTTGTCC GAAATGCCTCCAATATTTTGTTTGTTGGCGTCATCTCCTTTGTGCTTGCT GTGTTGCCGTGTATTACTTGCAATACTGTGTACCCAAACACGGCTGACCC CACACGAGCAGAATATGACTTACATATGACAAGACTAAGAGACAGCACTC CTGACGTCACCGTCTTGCCACAACGGGTGATGTGCTTTACACCTGATCGA ACAAGCAGCGACAGCCGTAGATACGCTTGGGGGGTAGTGAGACATGAGCG AACTCTCATTTATTTTATTTTTCTCCCAAGTCTAATAAATATCTGCCCAA ATATTAAGGTTTCAAGGTTCGGTTCTGTAGGGTACGGGTAACTCCGGTAG GGTATTGTAAGGGTCACAAAACCCACAGAACCACAGGGTAGGGTATTGTA AGGGTCACAAAACCCACAGAACCATAAGGTAGGGCATTGTCAGGGTCACA AAACCCACAGAACCATAGGGTGGGGCATTGTAAGGGTCACAAAACCCACA GAACCATAGGGTAGGGTATTGTAAGGGTCACAAAACCCACAGAATCTTAG GGTAGGGTATTGTCAGTCACAAATGGGTATTCTATAGGGTATTTTACCCC ATTTTCCGGGTATTTACCCGACTCAAAGGCTTCTGTAGGGTATGGTCAGG TCACAAAACCCACAGAACCACAAGGAAGGGTATTGCAAGGGCCACAAAAC CCACAGAACCATGGGGTAGGGTACCTACCGCCGGTAATTACCCCCGGTAT GGCTTTGTAGATACCCTACAGAACCGACCCTTGAAAGGTTTGACAAACAA AATTTGACGAACAAAAACGCGAAACGCCTCCTCGTCTTCCCACCCTCGGC GCCCACCTGTGCCGACACGACGCCCCAGCTCAAGGCGGTGGAGAACGACC CGCAGCTCAAGCTCGTCGACCAAGATGCCGAGGGGCTGTACATCTCGGCG ACGGCAAAGTCTGCGGTGCCCCCGGATGGCCTGGACAAGGTCGAGTTCCT CTTCAAGTGAGAGATATAATGCAGCAGATATAATGCATGCCTATGTAGCA GATGTAATGCAGCGGTGACCGGTAGGGCCCCAGCCTCGTAGATTTCGTAG CTTGCTGTCACGTGGACTAGCTCAGGGTTGCTTCAAAAGCATGCGATTTA GAAGTGCGGGCTTGTGTGCGGGGAACCGCATCTTGGAATGCGTCGTGTGG CATGGTTAGGTTGGAAGTGAGGTGCAATGACCCAGTTTAGCTTTCGGGCC AGATTGACCAGCGACTAACTACCAGTGCTGTTACCCCGATTTTGCGGTGC CCTCCTCGACCGCGGTTATTAACGGGAGTCCGCGTTATTGGGCAACAGCA ACGAAGATAGCAAAACGCCCAGTAGGGGCTCCGTGGCATTGAAATTACGT CACGGGCCTTCCTCTACCAATCGTAGACGTATCGATCGTGTCACTATGAA ATTGGCAACCACGGGACGCCTATCTCTTTTGTCGGACACAGGACTCGTAA AGCTCGAGTTGTGAGACTCGACATGTGAAAGTCAACCCCGGGGATGCGGC AGTTACACAAGACGCGCATCCAGCGCTACACGGTATATACCGTGTACGAC ACAAGATAACACACCCCCTGGACCGATTTTCAAAGCTCAAGTACTCCACA GCTAAATAGAGTGTTAGCCCCGAAAAGGGCGGTGTTGCAAATATCTCATC AAGAGCTGTCCGAAAACCGTCTCATTTGATATTTAAGACCCATCCATGCT CGTTGCGGGTTAACCGAGCTTTGAAAATCGGTCCATGGGTTGTGTTCTCT TGTGTCGTATACGGTACACTTTCTCGAAAACTCGTCCACTTCCATCCAAC CACACGTCCCGACTTTCTCGAAAACTCGTCCACTTCCATCCAACCGCACG TCCCGCTCTCGACCGCTGGCCCCGCGCAACGCCCCTGCATGCAGGCCCGA GGACGGGCTGGTGTCGTTCCGGTCCAAGAGCCTGAAAAGCGTGTTCGCCG GGCCGGTGATGGTCGGAGACGGGGGCTCGAACCGAAACAGGCAAGGCCGC GTGCTCGTGTGCACAGCAGCTCTAATGTAGCGGCATGATGGCCTGCTGCT TGGTGTTGTACTAATAGACCCAGTTCAGGCGGCACCGCGCATCGCTCGTC TTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCTCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCA CCCCCACCCCCNNNNNNNNNNGGCATGATGGCCTGCTGCTTGGTGTTGTA CTAATAGCCCCAGTTCAGGCGGCACCGCGCATCGCTCGTCTTCCCCCCCC CCCCCCCTGACCTGCTGCACCCCATCTAGACCATTACTCGCCGGCTTGAA AACGGGCGCCATCTAACCCGCCCGCTCAAAAACGGATTCATCCAAGAGTC TACTCGGGCTTATATGCCGCCGACGTTGTTTTTGGTGAGCACGTGCCGGA GCTTTCGCTGGAAACCATTTTTCGTTTTTGTTGTTCCGCGTCTGTCTCTA TGATAACCCTCCCGTCCTCCACGCACACCACACTCACACGTTCGGGATGT TTCGCCGGAGATACCTTGAACTTTCTTGCAATAATAAGGGGGCGCAATGC CTGTTTCGCCTCGCCTAGAACAGGCGAAAACCGCAAAACGTCCCTCGAGG CTTTGCCTTTACAGGATGCGAGGGTCCACGCTCTGAAGGAACGTGCTATT GCCGCTGACTGCTACGAGTACCCCCCCCCCCCCCCCCCCCGCCGGCGCGG GTGTCTTTTCGCGCGCGGGGGGGGGGCGGTGTAGGGGGGGGGGGGGGGGG GGGGGGGGGAGAGNNNNNNNNNNCCCTCGCGGCTTTTCCCTTACAGGGGG GGGGGGGCCCCCCCCCGAAGGAACGGGCTTTTGCCGCGGGCGTCCAACCG GCCCCCCCCCCCCCCCCCGTATGGCATTGTGGCCTTTCAACAGGCTGGAA GCGCTTCGAAAGAAGCTGGGGTGGCCGGAAAACGGGATAGACAACTACAT GCGAGATCAGGGGATCGACAGCGGCACGTCGAGGGCGAAAGGGTACCTCA GCGAGCTGGGCTGGAGGCAGGGAGAAACGCAGTCCTACGGAGAAGAGGAC GAATATTAGACACCCTCGTTATGTACCTGTGATGGCGTATTTACTCGAAG TTCAGGTCATGCACGTATGCATTTTGTTCGTTGTACGGAAACTTCGACCT CACCGTCGACGAGGGAAAGGAACGGCCGAACCCTTCTCGCGACAAAAATC TCAGGCAAGCACCGCAGACGGGGTGAGTGGGGGCCTTGGGGAAAGGGACC CCTTCTGTGTGACCACGGTTCAGTACTCTGGCAAGATGTCCTCATGACAG GGAACCCATCGAGCACTGGAAATAAATGTGAAGAAGAAAAAAAAACAATA CAGCGGGGTGGCAACTACTTAACCCCTCTTGCGCGCACGACTACTACTGC TGTTCCTTTCCCAACCAGTACGGCGGTGAGTAGTGCGTTGGTGGTGGCAC GTGCCTTTTATAGTTATCTGCGGTGGAATACAACACCCTGTTTCGCCGTC GATGGGAGGACGTCGATGTTAGCGTATCGACTCGTCTGGACTCTTTTGTC CCACAGACGGAAAACAGTTTCGCTTCTTTCTTCTTTCCGCAAAAGGGTGA GGATAGTTGATGAAGGGTATGTGTACGATTTTCTCCCTTGCTGCCAGCGA GCGTTTCTTCTAGTAGTCGGGAGGGTTAATCCACGATGCAATGCCTTTGC TGTAGAGCATGTTCTTGTCTACCAGGTTGGGAACGGATAGTTCAGCCTCC TAGTATAGGAAACCTAGTACACCTAGTAGGAGAGGGGCGGTAGAAAGCAG AAAAACAGCAGTGTCCATCAGAGCGAACACAGCAGTGGATGGATGTAGCA GCAGCAGCAAGATGGGATATTTCTCTGAGCGCGTGTACGGATGTGGCGTT GAACGGCAACTACACCAGGCGGTTCGGCTTCACTGCGTGTCGAGGTCCAA TCACCGCGTTCAAGACATGTCTTCACCGCCGAACGGTTCAGCTCAGCTTC GGAGTGTCTAGATTAGACCCCCGTCGTGCTTTCAAAACCTCGCTTCCTCG C
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig58:38695..45395-

>mRNA_L-elsbetiae_contig58.14224.1 ID=mRNA_L-elsbetiae_contig58.14224.1|Name=mRNA_L-elsbetiae_contig58.14224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1554bp|location=Sequence derived from alignment at L-elsbetiae_contig58:38695..45395- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCTGTGCCTCGGCTGCCGCGTTCGTCATGGCCTTGTGCTGCTGCCA
AAGGGCCGGCGGTTTCTTGGCACCAGCACCAGCACGAGGCGTGAGCTCAC
GAGGGGCCCGAGTGTCCATGTCCGGTCATATGCGCTGTGCCTCGGCTGCC
GCGTTCGTCATGGCCTTGTGCTGCTGCCAAAGGGCCGGCGGTTTCTTGGC
ACCAGCACCAGCACGAGGCGTGAGCTCACGAGGGGCCCGAGTGTCCATGT
CCGGTCATTCACCAGGGCCGACGAGCCGGGGAGACGCAATCGCGGCGGCG
GCGGCGGGTTTGCTGGCGACCGTTGCAGGCGTTTCGGCGGCAGGGGCGGC
GACGATCCCGGAGGCGCTGCCCGCCTGTCCCACGGAGGGGAACTGCGTTA
GCTCCACCTCATTCAAGCTGTCACCAGGGCCGACGAGCCGGGGAGACGCA
ATCGCGGCGGCGGCGGCGGGTTTGCTGGCGACCGTTGCAGGCGTTTCGGC
GGCAGGGGCGGCGACGATCCCGGAGGCGCTGCCCGCCTGTCCCACGGAGG
GGAACTGCGTTAGCTCCACCTCATTCAAGCTGGTAATGCAAGGGCGATAC
ATGGCGCCTTGGTCGTACACGGGAGACACCAAAGACGCCTCTGAGGCGTT
CTCCAAACTCGTAATGCAAGGGCGATACATGGCGCCTTGGTCGTACACGG
GAGACACCAAAGACGCCTCTGAGGCGTTCTCCAAACTCCTCAAGGCGGTG
GAGAACGACCCGCAGCTCAAGCTCGTCGACCAAGATGCCGAGGGGCTGTA
CATCTCGGCGACGGCAAAGTCTGCGGTGCCCCCGGATGGCCTGGACAAGG
TCGAGTTCCTCTTCAACTCAAGGCGGTGGAGAACGACCCGCAGCTCAAGC
TCGTCGACCAAGATGCCGAGGGGCTGTACATCTCGGCGACGGCAAAGTCT
GCGGTGCCCCCGGATGGCCTGGACAAGGTCGAGTTCCTCTTCAAGCCCGA
GGACGGGCTGGTGTCGTTCCGGTCCAAGAGCCTGAAAAGCGTGTTCGCCG
GGCCGGTGATGGTCGGAGACGGGGGCTCGAACCGAAACAGGCAAGGCCGC
GTGCTCGTGCCCGAGGACGGGCTGGTGTCGTTCCGGTCCAAGAGCCTGAA
AAGCGTGTTCGCCGGGCCGGTGATGGTCGGAGACGGGGGCTCGAACCGAA
ACAGGCAAGGCCGCGTGCTCGTGCTGGAAGCGCTTCGAAAGAAGCTGGGG
TGGCCGGAAAACGGGATAGACAACTACATGCGAGATCAGGGGATCGACAG
CGGCACGTCGAGGGCGAAAGGGTACCTCAGCGAGCTGGGCTGGAGGCAGG
GAGAAACGCAGTCCTACGGAGAAGAGGACGAATATTAGGCTGGAAGCGCT
TCGAAAGAAGCTGGGGTGGCCGGAAAACGGGATAGACAACTACATGCGAG
ATCAGGGGATCGACAGCGGCACGTCGAGGGCGAAAGGGTACCTCAGCGAG
CTGGGCTGGAGGCAGGGAGAAACGCAGTCCTACGGAGAAGAGGACGAATA
TTAG
back to top