mRNA_L-elsbetiae_contig58.14221.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig58.14221.1
Unique NamemRNA_L-elsbetiae_contig58.14221.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig58.14221.1 vs. uniprot
Match: A0A6H5JJK6_9PHAE (Methyl-accepting transducer domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.590e-17
Identity = 57/92 (61.96%), Postives = 63/92 (68.48%), Query Frame = 2 
Query:    2 TARVATLQEAVESQRAALENSEACLSAAEEVARRSAASLQVAAADGDLLKTELAALRELAGGATQELRXXXXXXXAQVDGAERTATELKEEA 277
            T+RV+ LQ  VESQ AAL+ SEACLS   E AR  AASL  A A GD L+++LAALR L G AT ELR       AQVDGAERTA ELK EA
Sbjct: 1453 TSRVSGLQRTVESQCAALQRSEACLSTGREEARTLAASLDAATARGDALESDLAALRALTGAATGELREEVALLRAQVDGAERTAAELKAEA 1544
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BLAST of mRNA_L-elsbetiae_contig58.14221.1 vs. uniprot
Match: D7G6Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q5_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.350e-15
Identity = 56/92 (60.87%), Postives = 62/92 (67.39%), Query Frame = 2 
Query:    2 TARVATLQEAVESQRAALENSEACLSAAEEVARRSAASLQVAAADGDLLKTELAALRELAGGATQELRXXXXXXXAQVDGAERTATELKEEA 277
            T+RV+ LQ  VESQ AAL+ SEA LS   E AR  AASL  A A GD L+++LAALR L G AT ELR       AQVDGAERTA ELK EA
Sbjct: 2794 TSRVSGLQRTVESQCAALQRSEAYLSTGREEARTLAASLDAATARGDALESDLAALRALTGAATGELREEVALLRAQVDGAERTAAELKAEA 2885
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig58.14221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJK6_9PHAE7.590e-1761.96Methyl-accepting transducer domain-containing prot... [more]
D7G6Q5_ECTSI2.350e-1560.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig58contigL-elsbetiae_contig58:11689..11998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size310
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.3548129-CDS-L-elsbetiae_contig58:11688..119971622816622.3548129-CDS-L-elsbetiae_contig58:11688..11997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 11689..11997 +
1691683691.7967489-CDS-L-elsbetiae_contig58:11688..119971691683691.7967489-CDS-L-elsbetiae_contig58:11688..11997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig58 11689..11997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig58.14221.1prot_L-elsbetiae_contig58.14221.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig58 11689..11997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig58.14221.1

>prot_L-elsbetiae_contig58.14221.1 ID=prot_L-elsbetiae_contig58.14221.1|Name=mRNA_L-elsbetiae_contig58.14221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
HGAGGHPPGGRRVPARRSRKLRGVSLGRRGGRPAVGRFPASGGGGRRPPQ
DRACRPPRARRRRDAGAEGGAGAAPGPGGRGGADRHRAQGGGDGGRGGGG
GSE
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mRNA from alignment at L-elsbetiae_contig58:11689..11998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig58.14221.1 ID=mRNA_L-elsbetiae_contig58.14221.1|Name=mRNA_L-elsbetiae_contig58.14221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=310bp|location=Sequence derived from alignment at L-elsbetiae_contig58:11689..11998+ (Laminarionema elsbetiae ELsaHSoW15)
CACGGCGCGGGTGGCCACCCTCCAGGAGGCCGTCGAGTCCCAGCGCGCCG
CTCTCGAAAACTCCGAGGCGTGTCTCTCGGCCGCCGAGGAGGTCGCCCGG
CGGTCGGCCGCTTCCCTGCAAGTGGCGGCGGCGGACGGCGACCTCCTCAA
GACCGAGCTTGCCGCCCTCCGCGAGCTCGCCGGAGGCGCGACGCAGGAGC
TGAGGGAGGAGCTGGCGCTGCTCCGGGCCCAGGTGGACGGGGCGGAGCGG
ACCGCCACCGAGCTCAAGGAGGAGGCGACGGCGGCCGCGGCGGTGGCGGC
GGAAGCGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig58:11689..11998+

>mRNA_L-elsbetiae_contig58.14221.1 ID=mRNA_L-elsbetiae_contig58.14221.1|Name=mRNA_L-elsbetiae_contig58.14221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig58:11689..11998+ (Laminarionema elsbetiae ELsaHSoW15)
CACGGCGCGGGTGGCCACCCTCCAGGAGGCCGTCGAGTCCCAGCGCGCCG
CTCTCGAAAACTCCGAGGCGTGTCTCTCGGCCGCCGAGGAGGTCGCCCGG
CGGTCGGCCGCTTCCCTGCAAGTGGCGGCGGCGGACGGCGACCTCCTCAA
GACCGAGCTTGCCGCCCTCCGCGAGCTCGCCGGAGGCGCGACGCAGGAGC
TGAGGGAGGAGCTGGCGCTGCTCCGGGCCCAGGTGGACGGGGCGGAGCGG
ACCGCCACCGAGCTCAAGGAGGAGGCGACGGCGGCCGCGGCGGTGGCGGC
GGAAGCGAGCACGGCGCGGGTGGCCACCCTCCAGGAGGCCGTCGAGTCCC
AGCGCGCCGCTCTCGAAAACTCCGAGGCGTGTCTCTCGGCCGCCGAGGAG
GTCGCCCGGCGGTCGGCCGCTTCCCTGCAAGTGGCGGCGGCGGACGGCGA
CCTCCTCAAGACCGAGCTTGCCGCCCTCCGCGAGCTCGCCGGAGGCGCGA
CGCAGGAGCTGAGGGAGGAGCTGGCGCTGCTCCGGGCCCAGGTGGACGGG
GCGGAGCGGACCGCCACCGAGCTCAAGGAGGAGGCGACGGCGGCCGCGGC
GGTGGCGGCGGAAGCGAG
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