mRNA_L-elsbetiae_contig5795.14216.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5795.14216.1
Unique NamemRNA_L-elsbetiae_contig5795.14216.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5795.14216.1 vs. uniprot
Match: D8LNE9_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE9_ECTSI)

HSP 1 Score: 470 bits (1210), Expect = 8.180e-158
Identity = 250/335 (74.63%), Postives = 286/335 (85.37%), Query Frame = 2 
Query:  128 AGGATLVLSLLLALSLSQSFVIPLTAAKRYH-HASQSASCVRVIGLAAATDSAGSDEGAPT-----EEKV-DEQDDGQARSPAGLTLEGVYKRLKLEAQGLNDGAVGLDSKDTDYGVEVVKVQVARKPTLGMQLEEVARGGDGRGLVLVAGVEPGGNADASGKIFVGDTLCSAGVEGDMSRVEALDWDQTVAVLGSFAEESEIVLIVKRLVKREAINVKFELPSGSREYDIKAGSNLRGEMMRLDVPVYDPKTMRYDQPYATGNCAGEGTCGTCFVEVQEGADLLTAPDREELMLLSRGKLPVRWRLSCKVIVGKENKAGTVRVKAVPQAEWRSQ 1111
            +  ++L+L L L L    SF++P  A  R    AS+SASC    G+  A+++ G  E   +     E KV DE DDG ARSP+GLTL+GVYKRL LE Q   DG VGL+SKDTDY +EVVKVQ+ RKP+LGMQLEEVARGGDGRGLVLVAG+EPGGNA+ASGKI VGDTLCSAG+EGDMSRVEALDWDQTV+VLGSFAEESEIVL++KRLVKRE+INV+FELPSGSR+++IKAGSNLRGEM+RLDVPVYDP+T R+DQPYATGNCAGEGTCGTCFVEVQ+GADLLT+PD+EELMLLSRG LPVRWRLSCKVIVGKENKAGTVR+KAVPQAEWRSQ
Sbjct:    4 SAASSLLLLLALQLRNGASFLLPSPAITRCSGFASRSASC----GVMRASEADGDAEETASLNVEDEAKVEDEGDDGLARSPSGLTLDGVYKRLTLETQSRADGVVGLESKDTDYAIEVVKVQMQRKPSLGMQLEEVARGGDGRGLVLVAGLEPGGNAEASGKICVGDTLCSAGIEGDMSRVEALDWDQTVSVLGSFAEESEIVLVIKRLVKRESINVQFELPSGSRDHEIKAGSNLRGEMIRLDVPVYDPRTKRFDQPYATGNCAGEGTCGTCFVEVQQGADLLTSPDQEELMLLSRGNLPVRWRLSCKVIVGKENKAGTVRLKAVPQAEWRSQ 334
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BLAST of mRNA_L-elsbetiae_contig5795.14216.1 vs. uniprot
Match: A0A836CRA8_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRA8_9STRA)

HSP 1 Score: 241 bits (614), Expect = 4.830e-70
Identity = 130/267 (48.69%), Postives = 175/267 (65.54%), Query Frame = 2 
Query:  356 GLTLEGVYKRLKLEAQGLNDGAVGLDSKDTDYGVEVVKVQVARKPTLGMQLEEVARGGDGRGLVLVAGVEPGGNADASGKIFVGDTLCSAGVEG--DMSRVEALDWDQTVAVLGSFAEESEIVLIVKRLVKREAINVKFELPS-----------GSREYDIKAGSNLRGEMMRLDVPVYDPKTMRYDQPYATGNCAGEGTCGTCFVEVQEGADLLTAPDREELMLLSRGKLPVRWRLSCKVIVGKENKAGTVRVKAVPQAEWRSQRK 1117
            G++LEG+YKRLK+E   L++G +GL+S+D  +G+E+V                       RGLVL+  V  GGNA  SG I  GDTL   G E   DM+RVE  D+D TVA LG +A+ +EI L++KRLV+R+ + V FE P+           G +   + AGSNLR EM+R D+PVYD KT R+DQPYATGNC GEG CGTCFVEVQEGA+LL+ PD  E M++    LP RWRLSC+ +VG +N+AG VR++++PQ+ + ++RK
Sbjct:   41 GVSLEGIYKRLKIEILDLDEGIIGLESRDPAFGIEIV-----------------------RGLVLIGDV--GGNAAESGLINTGDTLTYVGNEAARDMTRVEGQDYDTTVAALGKYADLAEITLVLKRLVQRKTLEVTFETPTAYAEDGTAVEWGGQGVQMLAGSNLRSEMIRRDIPVYDAKTRRFDQPYATGNCGGEGICGTCFVEVQEGAELLSPPDGLENMVMRN--LPRRWRLSCRTVVGGKNEAGQVRLRSIPQSAYVAERK 280
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BLAST of mRNA_L-elsbetiae_contig5795.14216.1 vs. uniprot
Match: A0A7S4DIM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIM7_HETAK)

HSP 1 Score: 240 bits (613), Expect = 1.660e-69
Identity = 127/259 (49.03%), Postives = 170/259 (65.64%), Query Frame = 2 
Query:  329 DDGQARSPAGLTLEGVYKRLKLEAQGLNDGAVGLDSKDTDYGVEVVKVQVARKPTLGMQLEEVARGGDGRGLVLVAGVEPGGNADASGKIFVGDTLCSAGVE-GDMSRVEALDWDQTVAVLGSFAEESEIVLIVKRLVKREAINVKFELPSGSR-EYDIKAGSNLRGEMMRLDVPVYDPKTMRYDQPYATGNCAGEGTCGTCFVEVQEGADLLTAPDREELMLLSRGKLPVRWRLSCKVIVGKENKAGTVRVKAVPQAE 1099
            +DG  R+  GLTLE +    K+    L++G  GLD++D +YG+E+ K +V+R+  LG+ L E+  G DGRGLVLV  V  GGNA  +G+  VGD L   G E GDM+RVE LD+D T+A LG +A+   + L+ KRLV+R+ + V    P GS  + ++ AGS LRGEM+R  + VYDP   R+DQPY TGNC GEG CGTC V V EG +LL+ PDR E M+L   K P R+RLSC+ IVG  N+ G V +K++P  E
Sbjct:   57 EDGVTRNADGLTLEEIAGLFKMSVFDLDEGLYGLDTRDVNYGIEIAKARVSREGGLGLGLSEMMAGRDGRGLVLVEDVAEGGNAATTGQFRVGDALSWVGEEPGDMTRVEGLDFDGTLAALGKYADREAVTLVAKRLVRRQPLEVTLIQPDGSEAKLEMLAGSVLRGEMLRQGLQVYDPSQKRFDQPYVTGNCGGEGLCGTCLVAVLEGKELLSLPDRVEAMVLE--KRPARYRLSCRTIVGVTNQPGKVVLKSMPTLE 313
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BLAST of mRNA_L-elsbetiae_contig5795.14216.1 vs. uniprot
Match: A0A4D9CWU2_9STRA (PDZ domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWU2_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.450e-55
Identity = 121/270 (44.81%), Postives = 157/270 (58.15%), Query Frame = 2 
Query:  350 PAGLTLEGVYKRLKLEAQGLNDGAVGLDSKDTDYGVEVVKVQVAR-KPTLGMQLEEVARGGDGRGLVLVAGVEPGGNADAS----GKIFVGDTLCSAGVEG-DMSRVEALDWDQTVAVLGSFAEESE--IVLIVKRLVKREAINVKFELPSGSREYD-----------IKAGSNLRGEMMRLDVPVYDPKTMRYDQPYATGNCAGEGTCGTCFVEVQEGADLLTAPDREELMLLSRGKLPVRWRLSCKVIVGKENKAGTVRVKAVPQAEW 1102
            P  LTLE +  ++K E   L+ GA GL+SKD  Y VE+ KV +   +  +G+ LEE+ RG DGRG VLV+ + P GNA  +    GKI VGD +C  G E   M R E LD++QT+  L  F E     I L++KRLV R +++V      G  E             + AGS LR E++R  +PVY   T+R+DQPY TGNC GEG CGTC V+V EG +LL   D  E M+ +R      WRLSC+VIVG  N  GTVR K +PQA +
Sbjct:   12 PPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGEGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMV-TRKWGAANWRLSCRVIVGATNTPGTVRFKLMPQAPF 280
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BLAST of mRNA_L-elsbetiae_contig5795.14216.1 vs. uniprot
Match: A0A7S2V297_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V297_9STRA)

HSP 1 Score: 195 bits (495), Expect = 4.150e-54
Identity = 111/204 (54.41%), Postives = 138/204 (67.65%), Query Frame = 2 
Query:  536 RGLVLVAGVEPGGNADASGKIFVGDTLCSAG--VEGDMSRV--EALDWDQTVAVLG--SFAE-ESEIVLIVKRLVKREAINVKFELPSGSRE-YDIKAGSNLRGEMMRLDVP--VYDPKTMRYDQPYATGNCAGEGTCGTCFVEVQEGADLLTAPDREELMLLSRGKLPVRWRLSCKVIVGKENKAGTVRVKAVPQAEWRSQRK 1117
            RGLVLV  + PGGNA  S KI VGDTLC A     G  S V  EA+D D T+  LG  SFA  + ++VLI KRLVKRE +NVK  LP G  +   + +GSNLRGEM+R  +P  +YDP+T RYDQP+ TGNC GEG CGTC +EV +G ++L+  D  E MLL     P+RWRLSC+  VG +NK+G+V+V+AVPQ E R  RK
Sbjct:    1 RGLVLVKDLAPGGNAALSAKIRVGDTLCRAADPTVGARSVVSLEAVDLDGTLQNLGALSFASRQKQLVLIFKRLVKREMVNVKIALPDGGEKTLQMLSGSNLRGEMIRQGLPEYIYDPETKRYDQPFITGNCGGEGICGTCLIEVMDGPEMLSEADNLENMLLENQ--PIRWRLSCRTFVGPDNKSGSVKVRAVPQKEMRESRK 202
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BLAST of mRNA_L-elsbetiae_contig5795.14216.1 vs. uniprot
Match: A0A7R9YBT6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBT6_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.630e-49
Identity = 108/255 (42.35%), Postives = 154/255 (60.39%), Query Frame = 2 
Query:  359 LTLEGVYKRLKLEAQGLNDGAVGLDSKDTDYGVEVVKVQVARKPTLGMQLEEVARGGD---GRGLVLVAGVEPGGNADASG-KIFVGDTLCS-AGVEGDMSRVEALDWDQTV-AVLGSFAEESEIVLIVKRLVKREAINVKFELPSGSRE-YDIKAGSNLRGEMMRLDVPVYDPKTMRYDQPYATGNCAGEGTCGTCFVEVQEGADLLTAPDREELMLLSRGKLPVRWRLSCKVIVGKENKAGTVRVKAVPQAEW 1102
            L++E +  RL ++   ++DG  GL  +D  YG++VVK  V RKP+LG+ L E+    D    R LVLV G+E  GNA A G  + VGD + + A   G     E  D+D  +  ++G      E+ L+V RLV+R  + + +ELP+G R      AGSNLRG  ++  V +YD +T R+D PYATG+CAGEG CGTC V V  G DLL+  DR E  L+ +G+ P+ WR +C+V VG +N+ GTV V+  PQ+ +
Sbjct:   58 LSVEDIADRLAIQVFDMDDGKFGLSCRDPAYGLKVVKTSVKRKPSLGIVLNEMVDASDPSADRALVLVGGLE--GNAAAEGVDLEVGDVITAIADGSGGYISTEGRDYDFLIDTIVGVDPGAEELTLVVNRLVERAMVTINYELPNGDRSSVQAPAGSNLRGIFLQEGVRLYDERTRRFDMPYATGDCAGEGLCGTCLVNVWSGEDLLSPADRNEA-LICKGR-PMGWRAACRVFVGADNQEGTVEVRLQPQSRF 308
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BLAST of mRNA_L-elsbetiae_contig5795.14216.1 vs. uniprot
Match: A0A7S3P6U2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6U2_9STRA)

HSP 1 Score: 179 bits (453), Expect = 6.120e-46
Identity = 103/257 (40.08%), Postives = 151/257 (58.75%), Query Frame = 2 
Query:  374 VYKRLKLEAQGLNDGAVGLDSKDTDYGVEVVKVQV---ARKPTLGMQLEEVARGGDGRGLVLVAGVEPGGNADASGKIFVGDTLCSAGV-EGDM-SRVEALDWDQTVAVLGSFAE-----ESEIVLIVKRLVKREAINVKFELPSGS-REYDIKAGSNLRGEMMRLDVPVYDPKTMRYDQPYATGNCAGEGTCGTCFVEVQEGADLLTAPDREELMLLSRGKLPVRWRLSCKVIVGKENKAGTVRVKAVPQAEWRSQ 1111
            + +RLKLE   L +G  G DS+D  YG+EV++ ++   +  P+LG+ L E+A   DGRGLVLV+ V        S  I VGD +      +G +  R   L++D+TV  +G   E     +  + L + RLVKR  I V+   P  +    +  AG NLR  ++R D+ +Y+ KT R+D PYATG+CAGEG CGTC V V EG DLL   D  E  L++RG+ P+ WR SC+ +VG  N+ GT++V+  PQ+++  +
Sbjct:  125 IARRLKLEIFDLEEGIFGFDSQDPVYGLEVIQTEIPLSSENPSLGLVLTEMAGNKDGRGLVLVSEVTGNAKNARSSPILVGDVITGVRTSDGSLRERTTGLNYDRTVEAVGDVKEAALKGDGTLHLELNRLVKRATIQVQVVQPGKNVTTIEALAGENLRRLLLRKDIRLYNRKTKRFDMPYATGDCAGEGLCGTCLVAVNEGMDLLNPKDGAE-ELITRGR-PLSWRASCRTVVGSNNEGGTIQVRVQPQSDFEDE 379
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BLAST of mRNA_L-elsbetiae_contig5795.14216.1 vs. uniprot
Match: B7G5I1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5I1_PHATC)

HSP 1 Score: 162 bits (409), Expect = 9.450e-41
Identity = 100/251 (39.84%), Postives = 142/251 (56.57%), Query Frame = 2 
Query:  374 VYKRLKLEAQGLNDGAVGLDSKDTDYGVEVVKVQV-ARKPTLGMQLEEVARGGDGRGLVLVAGVEPGGNADASGK--IFVGDTLCSAGVEGDM--SRVEALDWDQTVAVLGSFAEESE---IVLIVKRLVKREAINVKFELPSGSREY-DIKAGSNLRGEMMRLDVPVYDPKTMRYDQPYATGNCAGEGTCGTCFVEVQEGADLLTAPDREELMLLSRGKLPVRWRLSCKVIVGKENKAGTVRVKAVPQAE 1099
            + ++ KLE   L++G  G DSKD  YG+EVV   +      LG+ L E+A   DGRGLV+V+ +   GNA  +    I VGDT+        +   RV A ++D+TV  +G   E S    I L + RL+KR  + V+ +  SG  +  +  AG NLR   MR  + +YD +T R+DQP+ TGNC G+G CGTC V V +G DLL   D  E+ + ++G+ P  WR SC+  VG  N  GT+R+   PQ+E
Sbjct:   52 LAQKFKLEIFDLDEGLFGFDSKDNRYGLEVVHTNIDVGNDGLGLVLTEMAGSPDGRGLVMVSKIT--GNAAKANPQAIHVGDTITGVMANDGVLKERVTAFNYDKTVEAIGRAKESSTDGTITLELNRLIKRLPVRVEIDDGSGHVQVIEALAGENLRRMFMRKQLKLYDERTRRFDQPFNTGNCGGDGVCGTCLVNVLQGMDLLNPKDSHEVFI-TKGR-PPSWRASCRTTVGFNNVGGTLRISLHPQSE 298
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BLAST of mRNA_L-elsbetiae_contig5795.14216.1 vs. uniprot
Match: D8LNE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE5_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.970e-9
Identity = 47/70 (67.14%), Postives = 53/70 (75.71%), Query Frame = -1 
Query: 2103 GAGLKGRVLRGGSGXXXXXSASVEGNVSI-QYPRLVPLTAPKSAPAAERLYSTNNGRATTASTTNSRRPS 2309
            G GLKGR+LRGG GX    S S +GNVS+ +YPRLVPLTAPKSAP  E+LYSTN GR  T+ST   RRPS
Sbjct: 1139 GPGLKGRLLRGGGGXSG--SVSADGNVSVSKYPRLVPLTAPKSAPTVEKLYSTN-GRGATSST--GRRPS 1203
[Close]
BLAST of mRNA_L-elsbetiae_contig5795.14216.1 vs. uniprot
Match: A0A2J8AI05_9CHLO (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AI05_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 7.070e-8
Identity = 36/74 (48.65%), Postives = 43/74 (58.11%), Query Frame = 2 
Query:  884 YATGN----CAGEGTCGTCFVEVQEGADLLTAPDREELMLLSRGKLPVRWRLSCKVIVGKENKAGTVRVKAVPQ 1093
            Y T N    C G G CGTC VEV+EGA+LL+     E   LS GK P  WRL+C+ +VG   K+G V V   PQ
Sbjct:   19 YTTWNKVWQCGGVGQCGTCIVEVKEGAELLSERTAVEKKKLS-GK-PESWRLACQTLVGDGEKSGAVTVATKPQ 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5795.14216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LNE9_ECTSI8.180e-15874.63Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A836CRA8_9STRA4.830e-7048.692Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S4DIM7_HETAK1.660e-6949.03Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CWU2_9STRA1.450e-5544.81PDZ domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A7S2V297_9STRA4.150e-5454.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9YBT6_9STRA1.630e-4942.35Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3P6U2_9STRA6.120e-4640.08Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7G5I1_PHATC9.450e-4139.84Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
D8LNE5_ECTSI4.970e-967.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2J8AI05_9CHLO7.070e-848.652Fe-2S ferredoxin-type domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5795contigL-elsbetiae_contig5795:4729..10539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score471.9
Seed ortholog evalue2.6e-130
Seed eggNOG ortholog2880.D8LNE9
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009767,GO:0009773,GO:0009987,GO:0010598,GO:0015979,GO:0016020,GO:0019684,GO:0022900,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0055114,GO:0098796
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2S4WU@2759,COG0633@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionFerredoxin
Ec32 orthologEc-04_004110.1
Exons7
Model size2315
Cds size1014
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.9482188-UTR-L-elsbetiae_contig5795:4728..48201622816621.9482188-UTR-L-elsbetiae_contig5795:4728..4820Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5795 4729..4820 -
1691683691.4657097-UTR-L-elsbetiae_contig5795:4728..48201691683691.4657097-UTR-L-elsbetiae_contig5795:4728..4820Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5795 4729..4820 -
1622816621.9610546-UTR-L-elsbetiae_contig5795:5153..62531622816621.9610546-UTR-L-elsbetiae_contig5795:5153..6253Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5795 5154..6253 -
1691683691.4792032-UTR-L-elsbetiae_contig5795:5153..62531691683691.4792032-UTR-L-elsbetiae_contig5795:5153..6253Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5795 5154..6253 -
1622816622.04526-UTR-L-elsbetiae_contig5795:10430..105391622816622.04526-UTR-L-elsbetiae_contig5795:10430..10539Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5795 10431..10539 -
1691683691.581767-UTR-L-elsbetiae_contig5795:10430..105391691683691.581767-UTR-L-elsbetiae_contig5795:10430..10539Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5795 10431..10539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.9716244-CDS-L-elsbetiae_contig5795:6253..64391622816621.9716244-CDS-L-elsbetiae_contig5795:6253..6439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5795 6254..6439 -
1691683691.4925437-CDS-L-elsbetiae_contig5795:6253..64391691683691.4925437-CDS-L-elsbetiae_contig5795:6253..6439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5795 6254..6439 -
1622816621.9834714-CDS-L-elsbetiae_contig5795:6867..69571622816621.9834714-CDS-L-elsbetiae_contig5795:6867..6957Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5795 6868..6957 -
1691683691.5062854-CDS-L-elsbetiae_contig5795:6867..69571691683691.5062854-CDS-L-elsbetiae_contig5795:6867..6957Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5795 6868..6957 -
1622816621.9973204-CDS-L-elsbetiae_contig5795:7141..72801622816621.9973204-CDS-L-elsbetiae_contig5795:7141..7280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5795 7142..7280 -
1691683691.5197344-CDS-L-elsbetiae_contig5795:7141..72801691683691.5197344-CDS-L-elsbetiae_contig5795:7141..7280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5795 7142..7280 -
1622816622.0086572-CDS-L-elsbetiae_contig5795:7601..77141622816622.0086572-CDS-L-elsbetiae_contig5795:7601..7714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5795 7602..7714 -
1691683691.5340192-CDS-L-elsbetiae_contig5795:7601..77141691683691.5340192-CDS-L-elsbetiae_contig5795:7601..7714Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5795 7602..7714 -
1622816622.02517-CDS-L-elsbetiae_contig5795:8324..84651622816622.02517-CDS-L-elsbetiae_contig5795:8324..8465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5795 8325..8465 -
1691683691.549471-CDS-L-elsbetiae_contig5795:8324..84651691683691.549471-CDS-L-elsbetiae_contig5795:8324..8465Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5795 8325..8465 -
1622816622.035421-CDS-L-elsbetiae_contig5795:10085..104301622816622.035421-CDS-L-elsbetiae_contig5795:10085..10430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5795 10086..10430 -
1691683691.5711055-CDS-L-elsbetiae_contig5795:10085..104301691683691.5711055-CDS-L-elsbetiae_contig5795:10085..10430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5795 10086..10430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5795.14216.1prot_L-elsbetiae_contig5795.14216.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5795 6254..10430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5795.14216.1

>prot_L-elsbetiae_contig5795.14216.1 ID=prot_L-elsbetiae_contig5795.14216.1|Name=mRNA_L-elsbetiae_contig5795.14216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=338bp
MCINNTAGGATLVLSLLLALSLSQSFVIPLTAAKRYHHASQSASCVRVIG
LAAATDSAGSDEGAPTEEKVDEQDDGQARSPAGLTLEGVYKRLKLEAQGL
NDGAVGLDSKDTDYGVEVVKVQVARKPTLGMQLEEVARGGDGRGLVLVAG
VEPGGNADASGKIFVGDTLCSAGVEGDMSRVEALDWDQTVAVLGSFAEES
EIVLIVKRLVKREAINVKFELPSGSREYDIKAGSNLRGEMMRLDVPVYDP
KTMRYDQPYATGNCAGEGTCGTCFVEVQEGADLLTAPDREELMLLSRGKL
PVRWRLSCKVIVGKENKAGTVRVKAVPQAEWRSQRKS*
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mRNA from alignment at L-elsbetiae_contig5795:4729..10539-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5795.14216.1 ID=mRNA_L-elsbetiae_contig5795.14216.1|Name=mRNA_L-elsbetiae_contig5795.14216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5811bp|location=Sequence derived from alignment at L-elsbetiae_contig5795:4729..10539- (Laminarionema elsbetiae ELsaHSoW15)
CAGAGCTAAGACTTTGTGGCAAAATCTTCCGCGGCATTGCCGAAGTTACA
GTCGTGCCCAGAGGTTGGAGAAACGCCATTCGATAAGACCAGTCAGGTCA
CAAAAAAACATGTGCATCAACAATACAGCCGGCGGAGCAACGCTGGTTCT
CTCGCTGTTGCTGGCCCTGTCCCTCTCGCAGTCGTTCGTGATCCCCTTGA
CGGCTGCGAAAAGATACCACCATGCGTCACAGTCTGCATCGTGCGTCAGG
GTGATAGGCTTGGCGGCAGCCACAGACAGTGCAGGCTCTGACGAGGGAGC
ACCGACTGAGGAGAAGGTTGACGAGCAAGACGACGGTCAAGCAAGAAGCC
CCGCTGGGCTTACTCTGGAAGGGGTGTACAAGCGGCTCAAGTTGGAGGCG
CAGGGCCTGAACGATGGAGCCGTGGGGCTCGACTCTAAGGACACCGATTA
TGGCGTAAGTTGAAGCCTTGAAAAACAGTGCACAACAATACAACAATACT
GCTGACTGTACACATGCACACAAGTGAAGACGGTGGAGACGTGTACTACG
TGGTGCCGCCCAACCTTAGATTTACATGTGGTAGATTGTATGTAGTCGAT
CTACCTACATGTGTACCTAAATACATACCTACACAGGTAAATAGGTGGCA
CAACGAGTGATGTGTGTTGCCCTGCAGGAGGCTGCCCGCTCTGGGCCTGT
TTGTCGGCATGTATCAGCGCTGAGACCTCAACCCAGTACAGTCTAAAGGG
CCATCTTCTACGCCGTAGGCAACATCGACTGTTATTGTGAGGATAAGTTT
TTGTGCCTTGCATCCATGGCTATTTTACGATAAAGTTTGTGCTTGTTCCT
GCTGTGTATCACGGAGGAGAAGGAATGCGCCCGGCGTGAAGGATAGTTTT
AGCCCTTTTGGTACTGGAAGCCCGTTTGGAGAAAAAATTGGCGACACCTA
AAATTTGCCAACTGTTCTCGACCAAGACTTTCAATGGTAGTCTTTGGAAC
CCGTATAACGGCCTGGGGACACCCCGCCAAGCGGTATGGACACTATATCT
GCCCTACTTGCCCTGCACACAGCTCCACAGCAGTGCTGGAGACACAACTG
AGTTGTTGGGGATATCTCGAAAATCTCGGGAACAAAAATCGCCGAGATTC
GTACCTTCCGCCGCGCCCCCGGCGGTTCAGCCGTTCGAGCCGCCAGCACA
CACACCTCTCTGCTGTCACTGTTGAGAATCGCCGTCTGCTGAGCTTAGAG
CGGGTTGCGTCGCCCGCCACGCTCAAGTGTGTGTTGTGATGGCTGTTTCG
TGTATTTACACACCCACAGCTCAGGGTTAACGTCATGTCTCTACAGCAGA
GAAGTCTGTCTTGTCTAGTACGCTAATACAGTTTGTACTGCGTTTCAGTA
CATATACTTTTTTTCTCCAAACGGGTTGGACAGTTTGACTTGCGTTTTGA
ATGCAACTTTTCTCCAAATGATGTCGGGGCTCCGCAGCTTCAAAAATGGA
GAGACTTTTGTTTCTTGGCCAATCAGTGGGCACCCAGAAGGCGCGATAAC
TTTTCGGCGATAATTTGTTTTTTCAGAGGGCTATCTAGCGTACTAAAAGG
GTTGATTACTCGCGCGTAAAGCGCTTTTTCCAGAATGTACGGAGCGGTCT
ATCTTATAGATAGACCTCTTGTAGGGAGATAATGTTCCTAGAAGTACTTA
CATACGTTGCTGAGCTGAACACGAACACAGAAAACTTAAGCACCCGTTAG
ACAGGAGTGTGTACAACACAGCACGGTGGTTCTGCCCTCTCCGGTGCCGT
GCGGTCAACCGGCCCGTCGTTTTGTTGTTCATGGGCGGACTTGCTCGGGC
GACATTGTTGGTGTCGGTGTCGTTATCGGTGCCTCTTTATTCGTCGACAC
GGGGTTTTGAGTGAGCCTGTACAGCAAGATCTCTTTTGGGGGCAGCGACA
GCAGCAGACAAAAGAGCCGAGGGCATCAACCAACCCACAAAAATGCAGCA
CTACATGCATACAGAGTACGAATACCACCGCACCCTGCCCACACACGACC
GGAACACGAACGCGAACATCACAGGTCGAGGTCGTGAAGGTCCAGGTGGC
GCGCAAACCTACCCTTGGCATGCAGCTGGAGGAGGTGGCGAGGGGCGGAG
ACGGCCGTGGGTTGGTTTTGGTAGCGGGCGTGGAACCTGGTGGAAATGCC
GACGCTTCCGGCAAGGTAAGATTGGAGATGCCGCGTTTACTCTGCGATAT
GTAGGCAGTGTACGCCACGGTGGGGAGCTAGATCGACCCCACGTACCTGG
TAATGTATGTATTTGTGTGGGTTTTTATGCTTTGTGGCGAAAACGCCGAC
GCTTCCGTCTGTAGGGGATTCAGAGTGAGCTTCCCGCTTGGAGCAGGAAA
CTGCTCCCCTTCTCCCGTCCATGGAAGTTGGGCCACACCAGCCACATGAT
GCACGATGCGGCGAAATCTACGAATGGTCCACCCAATGCCTTGACGTCTA
CTGCCGTGATATTTTTTGTAGCTCCTGCGCTTGACAGCGGTGGATCCCAT
CGATGTCCCCGCGCTTTTCGTCCGCCGCTGCATACCCGTGCTTGCCTCAC
GCACCCAGCGCAGCCCCCTTCCCCCGCGTCCCACCCTCGACTGTCTGTGC
AACTGCGCCCTTGTCTACAGCGCCTATACTCGAAGCATATATGGACGGGG
TTCTGGTGCCGCTTTTGCTGCTCCAAGGGCTACTTACTGCTCATTACACG
GCTGCATATGCCACCGCTTTATAAGTGTACCTGATGCCGCCGCTCCTCCT
GCCGCCGCTCCCGAATCTTAAACAGATTTTCGTGGGCGACACGCTTTGCT
CGGCGGGCGTAGAGGGAGACATGTCGAGGGTGGAGGCTCTCGATTGGGAC
CAGACCGTGGCCGTCCTGGGCAGCTTCGCGGAGGAGAGGTGGGTTCCGAG
CTTGCAGCCTGGAGGCTCTCGTGTTGTGGCACCGCTCGGACTTTCCGCGA
AACCGTCTTGTGCTTCATACGTGCATCTGTGTATTTTTTCACCAAACGTG
TGATGTCTGCCTCGATATCTGCCTCGAAAACGAGACAAGAAGACGAACCG
AGAACCGACCAAAGCCTGTTTTCTCGGCCTCTCCTGTCCGAGCGTATACT
GCTGTTATCGCTTTCTGGTGCCCCCCCCCCCGTTTCCTGCTTTTCCGAAT
TCACGCCCTCGACTGCGATACAATCTCCGTCCGTTGTCTGCGCCCTGGTT
ACGGATCAGCGAAATCGTCCTAATCGTGAAGCGGCTTGTCAAGCGGGAGG
CGATCAACGTCAAGTTCGAGCTTCCCAGTGGCTCCCGCGAGTACGACATC
AAGGCGGGCTCCAACCTCAGGGGGGAGATGATGCGGCTGGACGTTCCGGT
AAGCTCTCTATTGTTTGTCATCCTGCGCCATATGTTCGTGGTACACGCTG
GCATCGCTGCTGGCTGTATCCCGCCGCTGTCGCTGCCACTGCTGCTGCTG
CTGCTGCCTTGTAGGCAGCACACTGAAATGCTTGGTTTCTTCCTCCTTCG
ATTCGCGTTATGTACCATTCGGTTTTCGCAAGGTGTACGACCCGAAAACC
ATGCGGTACGATCAGCCGTACGCCACGGGAAACTGCGCGGGAGAGGGGAC
ATGTGGCACCTGCTTCGTAGAGGTGGGTCAGAGAGGCTTGTGACACGGGA
GTAGTCCGAGAACCTGGAACGGTCTTTATATATGTAGTTTGTGTTTGTAA
ACCTCGTGCACAGATACACATCTTTCAAGTGTCTCGCTCCAGTGTCGTTA
AGAGGCGACCCAAGCTCTGAAGGGACTCTAGGACGATTTTGGGGGCGTTT
TGACCTCTTCCCCCAGTTGCTCCGAGTTTCAAAAGTCTCGCAGTCAGTCA
TGGCAGCTCTACTTGAGCCCCAAAATGATCAGGAAAACTCAGGCAAGAAA
CTTACCCCCCACAAGAGTCGCCAGCGGTGCCATAATAGAAAAGGCCTCAA
ACGGGCGTTGGGCAAGTGTTCCTGTCTCGAAGGTAATATGTGGTGAAATG
AGCGGTCATAAATCCCTCCCCCCCCCCTCCCCTTTACGTGACTGTTACAG
GTCCAAGAGGGGGCGGACCTCCTCACGGCACCGGATCGGGAGGAGCTCAT
GCTGCTTTCGAGGGGAAAGCTGCCCGTTCGCTGGCGGTTATCGTGCAAAG
TCATCGTCGGGAAGGAAAATAAAGCTGGGACTGTCAGGGTCAAGGCCGTT
CCGCAAGCAGAATGGAGGTCGCAGAGGAAGAGCTAAATAAGTCTGACTAA
TCGCACACACAGGGAGTTTGGGTCAGAGGCCTCTTTATTCCGTCCGCGAC
TGCCGTATTTGATGACGTCACTAGAGATGTTGGAAAACACTCGCGACAGA
ATGCGGTTTTGAGACGTAGGAAAATAAATCACAACAAACGTTTTAATCTC
ATGCTTAACACGGCACACTAGCCGTAGCAGCCCGTTTTGGATTAGGTCGG
GTGGCGGGTAGGCATTGTTCTGGGTGACGGGTGCGATGTGGCAAGTTTCA
GAGCATTCCGCAGCACTCCGCGCGGAGTGAGTCTCTGTATATATTTCTCG
TCTATCTAGAGAAGTTGCACGTTAGACTATTGTAGACAGTTGCGAAAATC
TCGAATATTCGACCCGGTCGCCCCCGCAGTAACTTTGTGTTTTGATAACC
CTGCTTGCTAGTTGCGGGTTTGTTGTTTGGCAGTGGAGAGCGCTTTCGTG
AGCAGCATAGCCATGGAGAGGGAGGCTGCTCAACCTTTCTCGCATTAGAG
GTCGGCAGCAAGCCGTGGGAGGAATGTGTGAGGCCTGCTAACGTGTGACT
CCGCCGCAAGGACCGCAGACATTGCCTTGGAGGTACTAACCGAACGATCG
ACCGCACAAACCAAAGACGTTTCCGAATTCAAGTCGAAAAATAGACTGAT
GTTGAAGTTTAACCCGGTGGTGAGTCGGGGCAAGTACGGCGCGGTGGGAC
GGGAGATAGAGCGCTGTGACGTACCCCCCGACCTGAAGTGATAGCCTCAT
TGTTAATTGTCGTAGGAAGTGGTTTCGGAGCTACGGCTACCGTTTAGAAT
CTTGCAAGTTCTTGGGACCTCATTAAGCTACTTTGGGAATTACCGTGGGC
ATCCGATGGCGCCAACTCCATCCTCTCTAGTGAGAATGTTGTGTACATGT
CATACACACCTTCCTTCACACATAAAAACTTCGTACAACATTTTCCGAAA
CTGAATCTTAAATCACGAGGGGCGGCGACTGTTGGTGGTGGAAGCCGTTG
TTGCTCGTCCGTTGTTCGTCGAATACAGCCTTTCAGCTGCCGGTGCAGAC
TTCGGCGCAGTCAACGGCACCAGTCTCGGATACTGAGTAGACAAGGGATT
TGAACGGAAGCACAAACGGAGGACGAACAATAAAGACAGCCGGACCTGGG
AGTTGTGGAATCAGCGCTCTGAAATTCGTACACACAAAATTACACATAAA
AAAATAGTGCGCTTTCGTTCGGCGAACCAAACACTGCCACGATCACCAAC
TCCCGGTGCCTGCCCCTACAAGTCTATGTGTATCTACACAATTCGCCGTA
CAAGGGCTAAGTTTCAGCCTCTAAAACGGTTTAAAACGTGTTTCAGAACT
GTTTCCTGCGGTCCGAGGCCGTTCCATCACTGCAACATAGGTAGACTATG
TACGTACGTTACCTTTGAGATGCTAACGTTGCCCTCCACGGATGCTGAAC
CGCCACCTCCACCACCACTACCACCTCGCAGCACCCGTCCCTTCAGTCCC
GCACCTGCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5795:4729..10539-

>mRNA_L-elsbetiae_contig5795.14216.1 ID=mRNA_L-elsbetiae_contig5795.14216.1|Name=mRNA_L-elsbetiae_contig5795.14216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2028bp|location=Sequence derived from alignment at L-elsbetiae_contig5795:4729..10539- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCATCAACAATACAGCCGGCGGAGCAACGCTGGTTCTCTCGCTGTT
GCTGGCCCTGTCCCTCTCGCAGTCGTTCGTGATCCCCTTGACGGCTGCGA
AAAGATACCACCATGCGTCACAGTCTGCATCGTGCGTCAGGGTGATAGGC
TTGGCGGCAGCCACAGACAGTGCAGGCTCTGACGAGGGAGCACCGACTGA
GGAGAAGGTTGACGAGCAAGACGACGGTCAAGCAAGAAGCCCCGCTGGGC
TTACTCTGGAAGGGGTGTACAAGCGGCTCAAGTTGGAGGCGCAGGGCCTG
AACGATGGAGCCGTGGGGCTCGACTCTAAGGACACCGATTATGGCATGTG
CATCAACAATACAGCCGGCGGAGCAACGCTGGTTCTCTCGCTGTTGCTGG
CCCTGTCCCTCTCGCAGTCGTTCGTGATCCCCTTGACGGCTGCGAAAAGA
TACCACCATGCGTCACAGTCTGCATCGTGCGTCAGGGTGATAGGCTTGGC
GGCAGCCACAGACAGTGCAGGCTCTGACGAGGGAGCACCGACTGAGGAGA
AGGTTGACGAGCAAGACGACGGTCAAGCAAGAAGCCCCGCTGGGCTTACT
CTGGAAGGGGTGTACAAGCGGCTCAAGTTGGAGGCGCAGGGCCTGAACGA
TGGAGCCGTGGGGCTCGACTCTAAGGACACCGATTATGGCGTCGAGGTCG
TGAAGGTCCAGGTGGCGCGCAAACCTACCCTTGGCATGCAGCTGGAGGAG
GTGGCGAGGGGCGGAGACGGCCGTGGGTTGGTTTTGGTAGCGGGCGTGGA
ACCTGGTGGAAATGCCGACGCTTCCGGCAAGGTCGAGGTCGTGAAGGTCC
AGGTGGCGCGCAAACCTACCCTTGGCATGCAGCTGGAGGAGGTGGCGAGG
GGCGGAGACGGCCGTGGGTTGGTTTTGGTAGCGGGCGTGGAACCTGGTGG
AAATGCCGACGCTTCCGGCAAGATTTTCGTGGGCGACACGCTTTGCTCGG
CGGGCGTAGAGGGAGACATGTCGAGGGTGGAGGCTCTCGATTGGGACCAG
ACCGTGGCCGTCCTGGGCAGCTTCGCGGAGGAGAGATTTTCGTGGGCGAC
ACGCTTTGCTCGGCGGGCGTAGAGGGAGACATGTCGAGGGTGGAGGCTCT
CGATTGGGACCAGACCGTGGCCGTCCTGGGCAGCTTCGCGGAGGAGAGCG
AAATCGTCCTAATCGTGAAGCGGCTTGTCAAGCGGGAGGCGATCAACGTC
AAGTTCGAGCTTCCCAGTGGCTCCCGCGAGTACGACATCAAGGCGGGCTC
CAACCTCAGGGGGGAGATGATGCGGCTGGACGTTCCGCGAAATCGTCCTA
ATCGTGAAGCGGCTTGTCAAGCGGGAGGCGATCAACGTCAAGTTCGAGCT
TCCCAGTGGCTCCCGCGAGTACGACATCAAGGCGGGCTCCAACCTCAGGG
GGGAGATGATGCGGCTGGACGTTCCGGTGTACGACCCGAAAACCATGCGG
TACGATCAGCCGTACGCCACGGGAAACTGCGCGGGAGAGGGGACATGTGG
CACCTGCTTCGTAGAGGTGTACGACCCGAAAACCATGCGGTACGATCAGC
CGTACGCCACGGGAAACTGCGCGGGAGAGGGGACATGTGGCACCTGCTTC
GTAGAGGTCCAAGAGGGGGCGGACCTCCTCACGGCACCGGATCGGGAGGA
GCTCATGCTGCTTTCGAGGGGAAAGCTGCCCGTTCGCTGGCGGTTATCGT
GCAAAGTCATCGTCGGGAAGGAAAATAAAGCTGGGACTGTCAGGGTCAAG
GCCGTTCCGCAAGCAGAATGGAGGTCGCAGAGGAAGAGCTAAGTCCAAGA
GGGGGCGGACCTCCTCACGGCACCGGATCGGGAGGAGCTCATGCTGCTTT
CGAGGGGAAAGCTGCCCGTTCGCTGGCGGTTATCGTGCAAAGTCATCGTC
GGGAAGGAAAATAAAGCTGGGACTGTCAGGGTCAAGGCCGTTCCGCAAGC
AGAATGGAGGTCGCAGAGGAAGAGCTAA
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