mRNA_L-elsbetiae_contig5786.14204.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5786.14204.1 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE) HSP 1 Score: 405 bits (1042), Expect = 6.020e-120 Identity = 425/899 (47.27%), Postives = 478/899 (53.17%), Query Frame = 1 Query: 487 MYDPEALLLEPLLISPRSERQ------TGXXXXXXXS---------VCGNVLQDDRIMSQSIG---SSSIHLGG-IMGARWENEEVSGVPPSSSSMHTTTVSSSSRPLVPASPSLPGAQAGAAPSFIPDQPLRGGRESASSDARAAAS-----------------------NWYLDFPPSQQAQLHQXXXXXXXXXXXXXXXXXX---AASLATAAANIAAEINQAAANVSPSSFPPSGGSSYPPVEDGISPYSGVASAASGGVCGGYLAEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSF---------------------RHPRFVTREDCVPGSRFPPGGSSGGSDAVEEGRSGGVGLA--------HGYGIEVP-FPRSAENDAMNVDAPGWNNPPPSSAG---------------------------AKRPHSQLG----LSGV-MPSSSLNSCPSSSSSAYAEGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKMKVLGAADGSQGWANLPRSGANESSAGGGSG---WGGDAPAAGM------SVMLPGSMDGGSDRRRSGSRNVSPAQAATAAARAALAATFPQSLAAPDXXXXXXXXXXXXXGDSS----------------------PDWTERDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGKAKTPFMLDPNLWTIVERRAICVAKQCAYRSDDDHRARRRHYHALCSHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQRSSAG----KPRSPTS-SPVPRSKRTAAATNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRELVDELGPKWSIIADKIPGNKTATACMLHWRVGLNPNHMVKGSGTWTAEEDDRLSKLVEVVGMK 2754 +YDPEALLLEPLLISPRS+RQ +G S VC ++LQDDRIMSQSIG S S LGG IMG WE ++ + SS RPLVPASP +Q+G + P WYLD PP+ + Q XXXXXXXXXX AA ATAAA++AAE+++AA+ V+PSSF G SSYPP+E G+ G + G XXXXXXXXXXXXXXXXXXXXXXXXXXX XXX + PRFVTREDCVPGSRFP GS S VEEGR+ H +G++VP F RS AKRPHSQL +SG +PSS+ + +S Y +G KKMKVLGAADGSQGW NLP N SS G+ W A +V +P S++ + XXXXXXXXXXXXX PDWTE XXXXXXXXXXXXXXXXXXXXXXX S K KTPFMLDP LWT+VERRA+C AKQCAYRS++DHRARRRHYHALC+HVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQ SS G KPRSPT+ + PR+KR AAA+NGQKEQTRAIKDANVEAHSPKDWTPELTKRLR+LVDELGPKWS IADK+PG KTATACMLHWRVG+NPNHMVKGSGTWTAEED+RLSKLVEVVGMK Sbjct: 187 IYDPEALLLEPLLISPRSDRQNTSRSDSGGARAHANSITSTSTISVVCEDLLQDDRIMSQSIGRSGSGSQQLGGGIMGPPWETDDPT---------------SSPRPLVPASPP---SQSGVQRHQGEESPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEWYLDCPPNLRHQXXXXXXXXXXXXXAISAAARPPPTAAKFATAAASVAAEVSKAASAVAPSSFATPGSSSYPPIEHGMRTAGGEGITSFSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWPXXXXXXXXXXXXXXXXXXXXXXXXXXRKQQPRFVTREDCVPGSRFPRDGSC--SGLVEEGRTAAAAATAGMQQQFMHMFGVDVPPFLRSTTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRPHSQLAVGISISGEGIPSSATATTSASCPLPYTDG-----SLSSSATAGAGVAPQIAARLTPMMLNAHGHQGPGGKKMKVLGAADGSQGWTNLPHDSGNSSSGATGNXXXXWRDGAXXXXXXXXRVTTVPVPDSINDATSGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDWTEX----XXXXXXXXXXXXXXXXXXXXXXXRGSKKTKTPFMLDPKLWTVVERRAVCTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQTSSIGSSAAKPRSPTTVATAPRNKRVAAASNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGPKWSNIADKMPG-KTATACMLHWRVGVNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 1055
BLAST of mRNA_L-elsbetiae_contig5786.14204.1 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI) HSP 1 Score: 342 bits (877), Expect = 1.240e-104 Identity = 177/210 (84.29%), Postives = 191/210 (90.95%), Query Frame = 1 Query: 2155 KAKTPFMLDPNLWTIVERRAICVAKQCAYRSDDDHRARRRHYHALCSHVHQNGERKGMRFQHHQLEKVQKHQRAHQ-----NTQRSSAG----KPRSPTS-SPVPRSKRTAAATNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRELVDELGPKWSIIADKIPGNKTATACMLHWRVGLNPNHMVKGSGTWTAEEDDRLSKLVEVVGMK 2754 K KTPFMLDP LWT+VERRA+C AKQCAYRS++DHRARRRHYHALC+HVHQNGERKGMRFQHHQLEKVQKHQRAHQ NTQRSS G KPRSPT+ + PR+KR AAAT+GQKEQTRAIKDANVEAHSPKDWTPELTKRLR+LVDELGPKWS IADK+PG KTATACMLHWRVG+NP+HMVKGSGTWTAEED+RLSKLVEVVGMK Sbjct: 109 KTKTPFMLDPKLWTVVERRAVCTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQLEKVQKHQRAHQVSAKQNTQRSSIGSSAAKPRSPTTVAAAPRNKRVAAATSGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGPKWSNIADKMPG-KTATACMLHWRVGVNPDHMVKGSGTWTAEEDERLSKLVEVVGMK 317
BLAST of mRNA_L-elsbetiae_contig5786.14204.1 vs. uniprot
Match: A0A6H5KQ17_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ17_9PHAE) HSP 1 Score: 145 bits (366), Expect = 2.440e-33 Identity = 85/193 (44.04%), Postives = 111/193 (57.51%), Query Frame = 1 Query: 2176 LDPNLWTIVERRAICVAKQCAYRSDDDHRARRRHYHALCSHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQRSSAGKPRSPTSSPVPRSKRTAAATNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRELVDELGPK----WSIIADKIPGNKTATACMLHWRVGLNPNHMVKGSGTWTAEEDDRLSKLVEV 2742 LD +LW +VE+ ++C ++ C YR D A RRHYH+ C+H H GE+KGM F HHQLEKVQKHQR+H+ SA P P E +A++ A VE + P DW E T++L ELV++L W IA P KT C+LHWR LN N +++G+GTW AEED+RL KL V Sbjct: 210 LDKDLWVVVEKGSVCTSRDCTYR-DAARIASRRHYHSNCTHTHNGGEKKGMAFHHHQLEKVQKHQRSHKREATKSA-----PYKRTTP-------------EDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTHAWPSIARYFP-TKTGIQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPV 382
BLAST of mRNA_L-elsbetiae_contig5786.14204.1 vs. uniprot
Match: D8LH85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH85_ECTSI) HSP 1 Score: 145 bits (366), Expect = 2.210e-32 Identity = 85/193 (44.04%), Postives = 111/193 (57.51%), Query Frame = 1 Query: 2176 LDPNLWTIVERRAICVAKQCAYRSDDDHRARRRHYHALCSHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQRSSAGKPRSPTSSPVPRSKRTAAATNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRELVDELGPK----WSIIADKIPGNKTATACMLHWRVGLNPNHMVKGSGTWTAEEDDRLSKLVEV 2742 LD +LW +VE+ ++C ++ C YR D A RRHYH+ C+H H GE+KGM F HHQLEKVQKHQR+H+ SA P P E +A++ A VE + P DW E T++L ELV++L W IA P KT C+LHWR LN N +++G+GTW AEED+RL KL V Sbjct: 339 LDKDLWVVVEKGSVCTSRDCTYR-DAARIASRRHYHSNCTHTHNGGEKKGMAFHHHQLEKVQKHQRSHKREATKSA-----PYKRTTP-------------EDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTHAWPSIARYFP-TKTGIQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPV 511
BLAST of mRNA_L-elsbetiae_contig5786.14204.1 vs. uniprot
Match: A0A6H5JLY2_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY2_9PHAE) HSP 1 Score: 133 bits (335), Expect = 4.310e-28 Identity = 78/195 (40.00%), Postives = 104/195 (53.33%), Query Frame = 1 Query: 2173 MLDPNLWTIVERRAICVAKQCAYRSDDDHRARRRHYHALCSHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQRSSAGKPRSPTSSPVPRSKRTAAATNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRELVDELGP-KWSIIADKIPGNKTATACMLHWRVGLNPNHMVKGSGTWTAEEDDRLSKLVEVVGMK 2754 +LD +LW + ER C + +C Y+ + RRHYHA C H H+ G + GM F HHQLEK+QKHQRAH T K+T A + + NVE + P++WT + L LV GP W II+ + G KT T CMLHWR LN N VKG+GTW + ED+R+ LV++ G + Sbjct: 551 VLDADLWIVRERGEHCSSNECIYKDKTTGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRTLH-----------------KKTPAEA--------VLNEGNVEPYLPQEWTEQEASVLAHLVGMYGPTNWGIISAGV-GTKTETQCMLHWRFALNGNATVKGTGTWQSVEDERMLSLVQIFGQR 719
BLAST of mRNA_L-elsbetiae_contig5786.14204.1 vs. uniprot
Match: D8LCS2_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS2_ECTSI) HSP 1 Score: 131 bits (329), Expect = 1.930e-27 Identity = 77/195 (39.49%), Postives = 103/195 (52.82%), Query Frame = 1 Query: 2173 MLDPNLWTIVERRAICVAKQCAYRSDDDHRARRRHYHALCSHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQRSSAGKPRSPTSSPVPRSKRTAAATNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRELVDELGP-KWSIIADKIPGNKTATACMLHWRVGLNPNHMVKGSGTWTAEEDDRLSKLVEVVGMK 2754 +LD +LW + ER C + +C Y+ + RRHYHA C H H+ G + GM F HHQLEK+QKHQRAH T K+T A + + NVE + P++WT + L LV GP W II+ + KT T CMLHWR LN N VKG+GTW + ED+R+ LV++ G + Sbjct: 565 VLDADLWIVRERGEHCSSNECIYKDKTTGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRTLH-----------------KKTPAEA--------VLNEGNVEPYLPQEWTEQEASVLAHLVGMYGPTNWGIISAGV-ATKTETQCMLHWRFALNGNATVKGTGTWQSVEDERMLSLVQIFGQR 733
BLAST of mRNA_L-elsbetiae_contig5786.14204.1 vs. uniprot
Match: A0A836CC17_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC17_9STRA) HSP 1 Score: 102 bits (253), Expect = 5.430e-20 Identity = 71/208 (34.13%), Postives = 96/208 (46.15%), Query Frame = 1 Query: 2176 LDPNLWTIVERRAICVAKQCAYRSDDDHRARRRHYHALCSHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQRSSAGKPR---SPTSSPVPRSKRTAAATNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRELVDELGPK-----------WSIIADKIPGNK-------TATACMLHWRVGLNPNHMVKGSGTWTAEEDDRLSKLV 2736 +DP LW V C A QC R+ A RRHYHA C H H G + GMRF HHQLEK++KHQR H +++ + + SP++ P + T A+ A +E H + W+ T RLR LV+ + W +A + + +A CML WR +N V G GTW ED RL+ LV Sbjct: 1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPP--------------DVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLV 194
BLAST of mRNA_L-elsbetiae_contig5786.14204.1 vs. uniprot
Match: A0A835YQW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW6_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 3.990e-19 Identity = 70/191 (36.65%), Postives = 88/191 (46.07%), Query Frame = 1 Query: 2218 CVAKQCAYRSDDDHRARRRHYHALCSHVHQNGERKGMRFQHHQLEKVQKHQRAHQ-NTQRSSAGKPRSPTSSPVPRSKRTAAATNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRELVDELGP------KWS----IIADKIPG-NKTATACMLHWRVGLNPNHMVKGSGTWTAEEDDRLSKLVEVVGMK 2754 C A+ C R D ARRRHYHA C H H G + GMRF HHQLEK++KHQ AH R G P S + +E H+P+ W PE T+ L LV GP W +A +PG + C+LHWR+ +N V G TW+ ED RL+ LV + G K Sbjct: 18 CHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHAAEASRDRGGAPHLDPSMMA------------------ELNSHGIELHNPEAWPPEATRHLDTLVR--GPVGRPSSAWGEFPRALAAALPGFTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTK 188
BLAST of mRNA_L-elsbetiae_contig5786.14204.1 vs. uniprot
Match: A0A835ZA42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA42_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 2.870e-18 Identity = 66/185 (35.68%), Postives = 90/185 (48.65%), Query Frame = 1 Query: 2209 RAICVAKQCAYRSDDDHRARRRHYHALCSHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQ--RSSAGKPRSPTSSPVPRSKRTAAATNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRELVDELGPK-------WSIIADKIPGNK-TATACMLHWRVGLNPNHMVKGSGTWTAEEDDRLSKL 2733 R C A+ C R+ A RRHYHA C HVH +G + GMRF HHQLEK++KHQRAH+ + +A P SP +P E A+ E + P W+ + RL LV++ + W +A + +A+ CMLHWR +N ++ G GTW ED RL L Sbjct: 1 RCRCEAQDCTMRAAGTRLATRRHYHATCGHVHASGAKAGMRFHHHQLEKIRKHQRAHKRSSVIALTAPAPDSPYPGGLP------------VEVAEALLRGGAELYDPALWSADAGARLGALVEQQHARRGVGRVAWDKVAAAMRAPALSASQCMLHWRDVVNGGAIIMGVGTWCNAEDTRLRAL 173
BLAST of mRNA_L-elsbetiae_contig5786.14204.1 vs. uniprot
Match: A0A6H5L2W7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W7_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 2.830e-17 Identity = 66/168 (39.29%), Postives = 90/168 (53.57%), Query Frame = 1 Query: 2164 TPFMLDPNLWTIVERRAICVAKQCAYRSDDDHRARRRHYHALCSHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQRSSAGKPRSPTSSPVPRSKRTAAATNGQKEQT-RAIKDANVEAHSPKDWTPELTKRLRELVDELGP-KWSIIADKIPGNKTATACMLHWRVG 2661 T F LD +LW +V RR IC A+QC YR+ + R+HYHA CSHVHQ G +KGMRF HHQLEKV+KHQR+H + Q + + + SSP P A G Q+ R + E + W+ + L LV G +W ++ N++ T C W +G Sbjct: 656 TFFELDESLWRVVTRREICKAEQCVYRNPQTMVSHRKHYHATCSHVHQEGVKKGMRFHHHQLEKVKKHQRSHCSNQ-TRVPRDQGIASSPSPSPSMGVARPRGLDNQSSREGMSSGGEDDEEEPWSAREVELLEALVRNFGSGRWDQVSVHF-NNRSPTQCARKWALG 821 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5786.14204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5786.14204.1 >prot_L-elsbetiae_contig5786.14204.1 ID=prot_L-elsbetiae_contig5786.14204.1|Name=mRNA_L-elsbetiae_contig5786.14204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=918bp WDATNSVRSCSPGMATTSSSNDGGIQTLRVHESSSNVLSQVINMQGPYWRback to top mRNA from alignment at L-elsbetiae_contig5786:6031..11810+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5786.14204.1 ID=mRNA_L-elsbetiae_contig5786.14204.1|Name=mRNA_L-elsbetiae_contig5786.14204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5780bp|location=Sequence derived from alignment at L-elsbetiae_contig5786:6031..11810+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5786:6031..11810+ >mRNA_L-elsbetiae_contig5786.14204.1 ID=mRNA_L-elsbetiae_contig5786.14204.1|Name=mRNA_L-elsbetiae_contig5786.14204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5508bp|location=Sequence derived from alignment at L-elsbetiae_contig5786:6031..11810+ (Laminarionema elsbetiae ELsaHSoW15)back to top |