mRNA_L-elsbetiae_contig5785.14202.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5785.14202.1
Unique NamemRNA_L-elsbetiae_contig5785.14202.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5785.14202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5785contigL-elsbetiae_contig5785:4458..5641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1185
Cds size1182
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816620.5351782-CDS-L-elsbetiae_contig5785:4457..56391622816620.5351782-CDS-L-elsbetiae_contig5785:4457..5639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5785 4458..5639 +
1691683690.3545833-CDS-L-elsbetiae_contig5785:4457..56391691683690.3545833-CDS-L-elsbetiae_contig5785:4457..5639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5785 4458..5639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5785.14202.1prot_L-elsbetiae_contig5785.14202.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5785 4458..5639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5785.14202.1

>prot_L-elsbetiae_contig5785.14202.1 ID=prot_L-elsbetiae_contig5785.14202.1|Name=mRNA_L-elsbetiae_contig5785.14202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=394bp
GPGGVARPPQSPRDGSQSKHQQDGASRPPADSAPQQRPTRPGRGAASAGQ
QSITGWREPTEQAKSRMGRPAANAGRAVRGWSEETAPRARMGRPPTSPRA
GRALRGGGRDGSASAGDATSPPPTKTRMGRPPTPQGRGGSGGGRSRGDGA
KAANGNGGSGRSSRAGRGGVSGPAGEAIAVSGAPEERRKKKKMDDSVGTA
AAAAETSAAAETSAVAGTPAVAAAAAAAVVAVAAGESDSLSTCSSMPYPS
SLSSFAAPPASSLAATQPIAPAPRGPAPLLVANNPAPAPSSMDRPNIRPR
KRSHGDGGTAAAAAAAGAGLATASASAPSAHTAATGNNDTAKRLGNQKNK
PPPENAVVDGRKFKRRRDSVGGGQQAGSGEDEVAADSPSPAAAA
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mRNA from alignment at L-elsbetiae_contig5785:4458..5641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5785.14202.1 ID=mRNA_L-elsbetiae_contig5785.14202.1|Name=mRNA_L-elsbetiae_contig5785.14202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1184bp|location=Sequence derived from alignment at L-elsbetiae_contig5785:4458..5641+ (Laminarionema elsbetiae ELsaHSoW15)
GGACCGGGCGGCGTAGCGCGGCCGCCACAGTCTCCCAGGGATGGAAGCCA
GAGCAAGCACCAGCAGGATGGTGCCAGCCGCCCCCCAGCCGACAGTGCGC
CCCAGCAACGGCCAACCAGGCCGGGGAGAGGAGCGGCTTCGGCCGGGCAG
CAAAGCATCACCGGGTGGCGCGAACCCACCGAACAGGCCAAGTCGCGAAT
GGGTCGCCCTGCCGCGAACGCGGGGCGGGCGGTACGGGGATGGAGCGAGG
AAACCGCCCCCCGCGCGCGCATGGGCCGGCCTCCAACCAGCCCAAGAGCA
GGAAGAGCGCTACGGGGCGGGGGGCGCGATGGCTCCGCATCGGCTGGCGA
CGCGACAAGCCCCCCCCCTACGAAGACGCGAATGGGCCGCCCTCCAACCC
CCCAGGGACGGGGCGGTTCCGGCGGGGGTAGAAGCAGGGGGGATGGCGCG
AAGGCTGCCAACGGCAACGGCGGCAGTGGCCGCAGCAGCAGGGCTGGCAG
GGGTGGTGTTTCGGGGCCGGCAGGTGAAGCGATTGCGGTCTCGGGTGCGC
CGGAGGAGAGAAGAAAGAAGAAAAAGATGGATGATTCTGTGGGGACGGCG
GCGGCGGCGGCGGAGACATCGGCGGCGGCGGAGACATCCGCGGTGGCGGG
AACACCCGCGGTTGCAGCTGCAGCGGCAGCGGCGGTGGTGGCGGTGGCCG
CGGGCGAGTCTGATTCGCTCTCGACGTGCTCGTCGATGCCCTACCCGTCT
TCACTGTCCTCGTTTGCGGCACCTCCCGCGTCGTCGTTGGCAGCAACTCA
GCCGATTGCACCCGCACCCCGAGGCCCGGCACCGCTCTTGGTGGCCAACA
ACCCTGCTCCCGCACCGTCTTCGATGGACCGGCCCAACATCCGGCCGAGA
AAGCGGTCCCATGGGGACGGAGGCACGGCTGCGGCTGCGGCTGCGGCTGG
GGCAGGGTTGGCGACAGCGAGCGCTTCCGCCCCCTCCGCACACACAGCCG
CCACGGGGAACAACGACACAGCGAAAAGACTCGGCAACCAAAAGAACAAG
CCCCCGCCGGAGAACGCCGTCGTGGACGGGCGCAAGTTCAAGCGACGGCG
GGACAGCGTCGGCGGCGGGCAGCAAGCCGGTAGCGGCGAGGACGAAGTCG
CCGCCGATTCCCCGTCCCCGGCGGCGGCGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5785:4458..5641+

>mRNA_L-elsbetiae_contig5785.14202.1 ID=mRNA_L-elsbetiae_contig5785.14202.1|Name=mRNA_L-elsbetiae_contig5785.14202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2364bp|location=Sequence derived from alignment at L-elsbetiae_contig5785:4458..5641+ (Laminarionema elsbetiae ELsaHSoW15)
GGACCGGGCGGCGTAGCGCGGCCGCCACAGTCTCCCAGGGATGGAAGCCA
GAGCAAGCACCAGCAGGATGGTGCCAGCCGCCCCCCAGCCGACAGTGCGC
CCCAGCAACGGCCAACCAGGCCGGGGAGAGGAGCGGCTTCGGCCGGGCAG
CAAAGCATCACCGGGTGGCGCGAACCCACCGAACAGGCCAAGTCGCGAAT
GGGTCGCCCTGCCGCGAACGCGGGGCGGGCGGTACGGGGATGGAGCGAGG
AAACCGCCCCCCGCGCGCGCATGGGCCGGCCTCCAACCAGCCCAAGAGCA
GGAAGAGCGCTACGGGGCGGGGGGCGCGATGGCTCCGCATCGGCTGGCGA
CGCGACAAGCCCCCCCCCTACGAAGACGCGAATGGGCCGCCCTCCAACCC
CCCAGGGACGGGGCGGTTCCGGCGGGGGTAGAAGCAGGGGGGATGGCGCG
AAGGCTGCCAACGGCAACGGCGGCAGTGGCCGCAGCAGCAGGGCTGGCAG
GGGTGGTGTTTCGGGGCCGGCAGGTGAAGCGATTGCGGTCTCGGGTGCGC
CGGAGGAGAGAAGAAAGAAGAAAAAGATGGATGATTCTGTGGGGACGGCG
GCGGCGGCGGCGGAGACATCGGCGGCGGCGGAGACATCCGCGGTGGCGGG
AACACCCGCGGTTGCAGCTGCAGCGGCAGCGGCGGTGGTGGCGGTGGCCG
CGGGCGAGTCTGATTCGCTCTCGACGTGCTCGTCGATGCCCTACCCGTCT
TCACTGTCCTCGTTTGCGGCACCTCCCGCGTCGTCGTTGGCAGCAACTCA
GCCGATTGCACCCGCACCCCGAGGCCCGGCACCGCTCTTGGTGGCCAACA
ACCCTGCTCCCGCACCGTCTTCGATGGACCGGCCCAACATCCGGCCGAGA
AAGCGGTCCCATGGGGACGGAGGCACGGCTGCGGCTGCGGCTGCGGCTGG
GGCAGGGTTGGCGACAGCGAGCGCTTCCGCCCCCTCCGCACACACAGCCG
CCACGGGGAACAACGACACAGCGAAAAGACTCGGCAACCAAAAGAACAAG
CCCCCGCCGGAGAACGCCGTCGTGGACGGGCGCAAGTTCAAGCGACGGCG
GGACAGCGTCGGCGGCGGGCAGCAAGCCGGTAGCGGCGAGGACGAAGTCG
CCGCCGATTCCCCGTCCCCGGCGGCGGCGGCGGGACCGGGCGGCGTAGCG
CGGCCGCCACAGTCTCCCAGGGATGGAAGCCAGAGCAAGCACCAGCAGGA
TGGTGCCAGCCGCCCCCCAGCCGACAGTGCGCCCCAGCAACGGCCAACCA
GGCCGGGGAGAGGAGCGGCTTCGGCCGGGCAGCAAAGCATCACCGGGTGG
CGCGAACCCACCGAACAGGCCAAGTCGCGAATGGGTCGCCCTGCCGCGAA
CGCGGGGCGGGCGGTACGGGGATGGAGCGAGGAAACCGCCCCCCGCGCGC
GCATGGGCCGGCCTCCAACCAGCCCAAGAGCAGGAAGAGCGCTACGGGGC
GGGGGGCGCGATGGCTCCGCATCGGCTGGCGACGCGACAAGCCCCCCCCC
TACGAAGACGCGAATGGGCCGCCCTCCAACCCCCCAGGGACGGGGCGGTT
CCGGCGGGGGTAGAAGCAGGGGGGATGGCGCGAAGGCTGCCAACGGCAAC
GGCGGCAGTGGCCGCAGCAGCAGGGCTGGCAGGGGTGGTGTTTCGGGGCC
GGCAGGTGAAGCGATTGCGGTCTCGGGTGCGCCGGAGGAGAGAAGAAAGA
AGAAAAAGATGGATGATTCTGTGGGGACGGCGGCGGCGGCGGCGGAGACA
TCGGCGGCGGCGGAGACATCCGCGGTGGCGGGAACACCCGCGGTTGCAGC
TGCAGCGGCAGCGGCGGTGGTGGCGGTGGCCGCGGGCGAGTCTGATTCGC
TCTCGACGTGCTCGTCGATGCCCTACCCGTCTTCACTGTCCTCGTTTGCG
GCACCTCCCGCGTCGTCGTTGGCAGCAACTCAGCCGATTGCACCCGCACC
CCGAGGCCCGGCACCGCTCTTGGTGGCCAACAACCCTGCTCCCGCACCGT
CTTCGATGGACCGGCCCAACATCCGGCCGAGAAAGCGGTCCCATGGGGAC
GGAGGCACGGCTGCGGCTGCGGCTGCGGCTGGGGCAGGGTTGGCGACAGC
GAGCGCTTCCGCCCCCTCCGCACACACAGCCGCCACGGGGAACAACGACA
CAGCGAAAAGACTCGGCAACCAAAAGAACAAGCCCCCGCCGGAGAACGCC
GTCGTGGACGGGCGCAAGTTCAAGCGACGGCGGGACAGCGTCGGCGGCGG
GCAGCAAGCCGGTAGCGGCGAGGACGAAGTCGCCGCCGATTCCCCGTCCC
CGGCGGCGGCGGCG
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