mRNA_L-elsbetiae_contig5781.14200.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5781.14200.1
Unique NamemRNA_L-elsbetiae_contig5781.14200.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5781.14200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5781contigL-elsbetiae_contig5781:8037..10857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1272
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5781.14200.1prot_L-elsbetiae_contig5781.14200.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5781 8043..10407 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816620.2446988-UTR-L-elsbetiae_contig5781:8036..80421622816620.2446988-UTR-L-elsbetiae_contig5781:8036..8042Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5781 8037..8042 +
1691683690.154317-UTR-L-elsbetiae_contig5781:8036..80421691683690.154317-UTR-L-elsbetiae_contig5781:8036..8042Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5781 8037..8042 +
1622816620.3248873-UTR-L-elsbetiae_contig5781:10407..108571622816620.3248873-UTR-L-elsbetiae_contig5781:10407..10857Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5781 10408..10857 +
1691683690.2169905-UTR-L-elsbetiae_contig5781:10407..108571691683690.2169905-UTR-L-elsbetiae_contig5781:10407..10857Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5781 10408..10857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816620.2627265-CDS-L-elsbetiae_contig5781:8042..81631622816620.2627265-CDS-L-elsbetiae_contig5781:8042..8163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5781 8043..8163 +
1691683690.165545-CDS-L-elsbetiae_contig5781:8042..81631691683690.165545-CDS-L-elsbetiae_contig5781:8042..8163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5781 8043..8163 +
1622816620.2796528-CDS-L-elsbetiae_contig5781:8827..89641622816620.2796528-CDS-L-elsbetiae_contig5781:8827..8964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5781 8828..8964 +
1691683690.185667-CDS-L-elsbetiae_contig5781:8827..89641691683690.185667-CDS-L-elsbetiae_contig5781:8827..8964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5781 8828..8964 +
1622816620.293033-CDS-L-elsbetiae_contig5781:9447..96571622816620.293033-CDS-L-elsbetiae_contig5781:9447..9657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5781 9448..9657 +
1691683690.1958792-CDS-L-elsbetiae_contig5781:9447..96571691683690.1958792-CDS-L-elsbetiae_contig5781:9447..9657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5781 9448..9657 +
1622816620.31033-CDS-L-elsbetiae_contig5781:10059..104071622816620.31033-CDS-L-elsbetiae_contig5781:10059..10407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5781 10060..10407 +
1691683690.205216-CDS-L-elsbetiae_contig5781:10059..104071691683690.205216-CDS-L-elsbetiae_contig5781:10059..10407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5781 10060..10407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5781.14200.1

>prot_L-elsbetiae_contig5781.14200.1 ID=prot_L-elsbetiae_contig5781.14200.1|Name=mRNA_L-elsbetiae_contig5781.14200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=272bp
MNSMADALSHQCLLYFAADFGVSGALLSALEVGEAFLSCEGRSAEALSGK
RREENAPSGSTCTRRTGLARAGKGGIRPLTFHEFLDVLVRMSLACFRPEG
GKLSDTPQGNRDEPVGPGQCLRALLTHMWRRLHDSAELALNGVRAGGLRH
RSSIQKGALLKGVKLFNDEMLSRWRTEGFLDFASSSTSRATPTSLGSVHR
CALRQGRATEMLRDMLAVDKGVVEVAIEPAKAGLPRHQGVEHGDGAEGVG
AAASNSGARETSVAVSICSSH*
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mRNA from alignment at L-elsbetiae_contig5781:8037..10857+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5781.14200.1 ID=mRNA_L-elsbetiae_contig5781.14200.1|Name=mRNA_L-elsbetiae_contig5781.14200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2821bp|location=Sequence derived from alignment at L-elsbetiae_contig5781:8037..10857+ (Laminarionema elsbetiae ELsaHSoW15)
GCAACAATGAACTCTATGGCGGATGCTCTCTCGCACCAGTGCTTGCTGTA
CTTTGCGGCAGATTTCGGTGTCTCAGGAGCCCTGTTGTCGGCCCTGGAAG
TCGGCGAGGCCTTCCTATCCTGCGAGGGTGAGAGCCAAATTTGAGAACTT
TGCTTTAGACGCCCACTCTGAGTGGTGCTGTGGTATTCGAATTTCAAGCC
AATTCGTGCCACCCGGAAGGAGACTCAGGTGGCTTCGTGCTGAAGACCCA
TGATTATGTTCGTCTATTTAGATAGTGTTTTTTCTATTTCCGCAACCTCG
GAAGCTTAAGCTACTTCGAAATACACGCACAACTCACAGTCGAGGTCCTG
GTAGTGTCGATACCAGGTATGCACCAGTAATGCTGGGCTATTCTTTAGAA
TTGCCGGCATTGGCTAATCGTTGAGTTTTACGGTGTGATATCATTAGAGA
GTGCCGCGCGGCGAGAAAACATCACCTGTACATTGTTTAACATGAATTGC
CGTGTGTACCATCGTATCAAGAAGGCTGCAGAGCGCGAGCTCGCGATTTG
ATCGCACGGAGTTTCTGTTTGTCCCTGATACGATGCTCTCCCCTGGTGTG
TGTGTACTTCTATGAAATTAACTTTTTCGACCTTATTCCCCGATCCCCAG
TGTCTTGAAATTAGCACTGTGTGGGTGTGCGTCCCCTACTGTATTAAAAA
ATGCCCATGCATCCAAATATTAAAACGGGACCCTGACGGACCGTATGAAG
GCAAAACCGAATCAAAACTTGCCGCCGCTATCGATCGTCAGGGCGGTCTG
CCGAAGCCTTATCCGGGAAACGCAGAGAAGAAAACGCCCCGTCTGGTTCC
ACATGCACCCGTCGCACCGGCCTTGCTCGAGCCGGCAAAGGAGGCATCAG
GCCACTGACGTTCCACGAGTTCTTAGATGTGAGAAATTAAGAGTTTTAAT
TCTGTGCGTCATCATTCGTCGCCAGTTGAGTTCAAGCAACGTAAGTAGAG
CAGGCCGGATTATCTAGAGATTCAACTATCGCGTGCTTTATTTTGTTGAG
CGGTACTTCTTTTTGTGGGCCACCAAGAGTTCTGCTAGCAAAGGTGGGCG
TTTGCAGCTCGTGTCTTGTAGGACTTATTCGTGTGCGCTACCGCACAGAG
TGCGTGAAAGGGGGCGTCGGTCACAACCCTTATGTAGAGAACAGCACCCT
TTGTCGTCACGAAATTAACTGCAACACAAAGCATACTCCATGCGACACGC
ATTGGCACCTCCTGTGCCCTGAGGCCAACACTATCGTGCAACTTCATGCA
CCAACCAACATTCGCGTGTACTCTCTCTCTCTCTCCACAAAGGAGTACAC
AGTAGTCCGGCGATGCTCTCCGCCGCGCGTGTCTCACCAACCATGAAATG
CCTCGCCACAGGTCTTGGTGCGAATGTCTTTGGCATGCTTCCGCCCAGAA
GGTGGAAAATTGTCGGACACTCCGCAGGGCAACCGTGATGAACCTGTTGG
GCCGGGGCAATGCTTGCGCGCCCTGCTGACCCACATGTGGCGGAGGCTCC
ACGATTCCGCGGAACTAGCGCTGAACGGGGTCCGTGCAGGGGGGCTACGG
CATCGATCAAGCATTCAAAAGGTCCTGGGAGGGTTGAGAGCACAAAGCTA
GGATCGGTTTGTGGACCAATAGACTATAGGTGATGCAAGGGACTTTGAAA
GTCATTCCCGTTGACATTCATGGTGCAATATTCAACGAGCATGGTGGGTG
ATGTTGAGATGGTTCCAAGATTCCTGCTCTGGAGCTGCTCTCAAGCAAAC
CTACCATGTTCGCTTCCCCCCAGAGGCAGATGATATTGTACAAGCGGGTC
GCGCATGTGGTAGGAGTCTCGAATACTGGGAAATTTCGGAGCTTGCATGC
TTCGAACGCTTCCAAGGCTTTCGTTCCCTTCTGCATACCGATAAGCGTGG
GAAAACCTTACCCCGAATTTTTCCCGACCCGCCTTCTCAGTATCTGCTTC
TGACCGACCCGTTGAATACACAGGGCGCTCTATTGAAAGGCGTAAAGTTG
TTCAATGACGAAATGCTCTCCCGTTGGAGGACTGAGGGCTTTCTGGACTT
CGCGTCGAGTAGCACCTCTAGGGCGACGCCGACCTCGCTCGGGTCAGTTC
ATCGATGCGCTCTTCGACAAGGTCGCGCAACAGAGATGCTGCGGGATATG
TTAGCGGTTGACAAAGGTGTAGTCGAGGTAGCTATAGAACCAGCGAAAGC
TGGCCTCCCACGACATCAAGGGGTAGAGCATGGGGATGGAGCGGAAGGTG
TTGGGGCGGCAGCATCAAACTCGGGGGCGAGAGAAACCAGCGTTGCTGTC
AGCATATGCAGCTCTCACTAATAGATACGTCTATGTAGATGTCTTAAAAG
CTTATTTACGCACGGGGGGTAGACAGTTTTTGTAGACTTACATTAATAAT
TAAAAATGTGTGTGAAGACGGGGGGTCGTGTTGTTGCATTGAAACTGCGT
GATAAGTGCAGGGGAAGTCAGCTGTGCATGAGTTGCCGGTTCCAAAGAAT
GTCACAGAGGCGATTACACCCTCTCGCCACGAAAAATATTTCTCATGAGA
TTTTCAAACATGTGTGCCCCAGACCTCTTTTCTTTTTTCTCCCAATAAGG
GCGGGTTCCGAGCTAAAGCTGAATGTCCTTTCCGGAACTCAAAACATATA
AAAATGAAAAATCGACTTCGCAGTTGGTTTTGAAACGCCCAAAAACGACG
TTTAAAAAAATGCCCTGAGACAAAAAAAGTCCTCCTTCGCCTCGAACTTT
TTTTTTCGCCGCATTCCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5781:8037..10857+

>mRNA_L-elsbetiae_contig5781.14200.1 ID=mRNA_L-elsbetiae_contig5781.14200.1|Name=mRNA_L-elsbetiae_contig5781.14200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1632bp|location=Sequence derived from alignment at L-elsbetiae_contig5781:8037..10857+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACTCTATGGCGGATGCTCTCTCGCACCAGTGCTTGCTGTACTTTGC
GGCAGATTTCGGTGTCTCAGGAGCCCTGTTGTCGGCCCTGGAAGTCGGCG
AGGCCTTCCTATCCTGCGAGGATGAACTCTATGGCGGATGCTCTCTCGCA
CCAGTGCTTGCTGTACTTTGCGGCAGATTTCGGTGTCTCAGGAGCCCTGT
TGTCGGCCCTGGAAGTCGGCGAGGCCTTCCTATCCTGCGAGGGGCGGTCT
GCCGAAGCCTTATCCGGGAAACGCAGAGAAGAAAACGCCCCGTCTGGTTC
CACATGCACCCGTCGCACCGGCCTTGCTCGAGCCGGCAAAGGAGGCATCA
GGCCACTGACGTTCCACGAGTTCTTAGATGGCGGTCTGCCGAAGCCTTAT
CCGGGAAACGCAGAGAAGAAAACGCCCCGTCTGGTTCCACATGCACCCGT
CGCACCGGCCTTGCTCGAGCCGGCAAAGGAGGCATCAGGCCACTGACGTT
CCACGAGTTCTTAGATGTCTTGGTGCGAATGTCTTTGGCATGCTTCCGCC
CAGAAGGTGGAAAATTGTCGGACACTCCGCAGGGCAACCGTGATGAACCT
GTTGGGCCGGGGCAATGCTTGCGCGCCCTGCTGACCCACATGTGGCGGAG
GCTCCACGATTCCGCGGAACTAGCGCTGAACGGGGTCCGTGCAGGGGGGC
TACGGCATCGATCAAGCATTCAAAAGGTCTTGGTGCGAATGTCTTTGGCA
TGCTTCCGCCCAGAAGGTGGAAAATTGTCGGACACTCCGCAGGGCAACCG
TGATGAACCTGTTGGGCCGGGGCAATGCTTGCGCGCCCTGCTGACCCACA
TGTGGCGGAGGCTCCACGATTCCGCGGAACTAGCGCTGAACGGGGTCCGT
GCAGGGGGGCTACGGCATCGATCAAGCATTCAAAAGGGCGCTCTATTGAA
AGGCGTAAAGTTGTTCAATGACGAAATGCTCTCCCGTTGGAGGACTGAGG
GCTTTCTGGACTTCGCGTCGAGTAGCACCTCTAGGGCGACGCCGACCTCG
CTCGGGTCAGTTCATCGATGCGCTCTTCGACAAGGTCGCGCAACAGAGAT
GCTGCGGGATATGTTAGCGGTTGACAAAGGTGTAGTCGAGGTAGCTATAG
AACCAGCGAAAGCTGGCCTCCCACGACATCAAGGGGTAGAGCATGGGGAT
GGAGCGGAAGGTGTTGGGGCGGCAGCATCAAACTCGGGGGCGAGAGAAAC
CAGCGTTGCTGTCAGCATATGCAGCTCTCACTAAGGCGCTCTATTGAAAG
GCGTAAAGTTGTTCAATGACGAAATGCTCTCCCGTTGGAGGACTGAGGGC
TTTCTGGACTTCGCGTCGAGTAGCACCTCTAGGGCGACGCCGACCTCGCT
CGGGTCAGTTCATCGATGCGCTCTTCGACAAGGTCGCGCAACAGAGATGC
TGCGGGATATGTTAGCGGTTGACAAAGGTGTAGTCGAGGTAGCTATAGAA
CCAGCGAAAGCTGGCCTCCCACGACATCAAGGGGTAGAGCATGGGGATGG
AGCGGAAGGTGTTGGGGCGGCAGCATCAAACTCGGGGGCGAGAGAAACCA
GCGTTGCTGTCAGCATATGCAGCTCTCACTAA
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