mRNA_L-elsbetiae_contig578.14195.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig578.14195.1
Unique NamemRNA_L-elsbetiae_contig578.14195.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig578.14195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig578contigL-elsbetiae_contig578:20375..22303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size281
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig578.14195.1prot_L-elsbetiae_contig578.14195.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig578 20375..22302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816619.4911861-CDS-L-elsbetiae_contig578:20374..204361622816619.4911861-CDS-L-elsbetiae_contig578:20374..20436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig578 20375..20436 +
1691683689.5433407-CDS-L-elsbetiae_contig578:20374..204361691683689.5433407-CDS-L-elsbetiae_contig578:20374..20436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig578 20375..20436 +
1622816619.5026503-CDS-L-elsbetiae_contig578:21806..219241622816619.5026503-CDS-L-elsbetiae_contig578:21806..21924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig578 21807..21924 +
1691683689.555097-CDS-L-elsbetiae_contig578:21806..219241691683689.555097-CDS-L-elsbetiae_contig578:21806..21924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig578 21807..21924 +
1622816619.5195394-CDS-L-elsbetiae_contig578:22203..223021622816619.5195394-CDS-L-elsbetiae_contig578:22203..22302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig578 22204..22302 +
1691683689.5681803-CDS-L-elsbetiae_contig578:22203..223021691683689.5681803-CDS-L-elsbetiae_contig578:22203..22302Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig578 22204..22302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig578.14195.1

>prot_L-elsbetiae_contig578.14195.1 ID=prot_L-elsbetiae_contig578.14195.1|Name=mRNA_L-elsbetiae_contig578.14195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
ATGAKPSAARRTQESHLSALSSASETAQNHVRTRAPQGRHEGESGVHHNP
ANREGIHRSQAQRPQAGRMSPPRALRLPRQLLPRPSSEPLPPS
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mRNA from alignment at L-elsbetiae_contig578:20375..22303+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig578.14195.1 ID=mRNA_L-elsbetiae_contig578.14195.1|Name=mRNA_L-elsbetiae_contig578.14195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1929bp|location=Sequence derived from alignment at L-elsbetiae_contig578:20375..22303+ (Laminarionema elsbetiae ELsaHSoW15)
GCGACTGGTGCGAAGCCGTCAGCCGCTCGGAGAACACAAGAATCTCACCT
TTCTGCTTTAAGGTGCGTGTTCAAGTCGATTTGCCACGAAGCGTGGTCTC
TGTTCATCAACACTTGAAACGGCATGTCTCCTGTCTGTAGGCAAAAAAAT
GCGCGTCTACGTCCAGGGTCCCAGGAATCTACACCCGTAGAGTTTGTCAA
GCAAGGCGTAACCGCCTCAGACTGAGGAGTGTTTATTATATATATCCTCC
CTTACAGCCCTCGCGTGAGTCAACTTGCGTGTTTCACTTTTTACTTTTTG
CCTCGAGCGGAATAACTTTTCAGCTCTCAAAAGTTCAACGCCAACCCGGG
GTCCCCATCCCCGAGTACTCTAATTTATTTACCAGATTGGCGAAGGATAC
CCCCACACCATTCCTTGGTTGATATGTAGTACGAATGATCAAAATCTTTT
TTGCGGGTGGAAGGTGTGGTGCGTTATGTGGTGGTGATGTCTGTTGAGAA
GTACTTCGAAAAGTATGTGTGTGCCAGACAGCACCTATTGACCTACGGTC
ACTAGGAAAATAATGAATGAAGGCGTTTCTGTCCTCCTTCTTTGGGGTGC
GCTCTCGTAAAATTGTCGATTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TCTTCACATTAAAAACCGTTCCGATCTCTATATCCAGGTACACCTCCATG
ATTCCGGGTACTGATCCAACACTGACGCGGTCATTTCCCGTGGTCACAGG
ATAACTTACCCTCAAAGGGTAAATAAAGACTACTGAAATAAAAATAAAAA
ATGGGCCCGAGGGGCCCACATAGCACAAAACAAAAGATCAGATACATCAC
CAACCGCGGGGGGATACGCACCCTTGGTTCTATCTTGGTTCAGTACGGGT
AGGGCATGCTACATAGCGCCTCGGGCCGCGCACCGGTTGGTCCTCCGCCA
GCGTCAGCATCAAAACCCGAGGAGAAGACGCTTTCATATATGTATGCACT
AACTAATGCAACAGAAGTGTTCGACGGAGCTTTTGCCCGAAAACTTCCCT
ATTTGGGTATTTTGTGCCCCCCCATTTCGAACCCAAGGCAGTTTATCTTG
TTCGAACTAACTCAAATCTAAATGGCTACGTTCCCACGCTTAGTTATTTG
CGCTTTACACCGGGCTTGAAGCTGCACACAGTAGCGACGGGAAGGAGGGC
GTGCGGTAACGCCCGCGACTGATACAAGTAGTTTTCTCACCGCCTAACAG
CAGCAAAACAAAGTATGAAAAAAGTAGAGGTTGTTACTGAAATACATTTT
TTTTTTTATCTTTCTCGTTCCCCCCCCAGCATGGCTCCGTCCTTCCTTCC
TTCCTTCATGTTTTACGGCCCGAAATACAAGATCAACAATATGTGTACCT
CTGCCCCTGCTTCCCCGTGCTGCGTGCACCAGTTCAGCGTCCGAAACAGC
CCAGAATCATGTTCGGACACGGGCACCGCAGGGGAGGCACGAAGGAGAGA
GTGGCGTCCATCATAATCCAGCGAATCGTGAGGGGATTCATCGGTCGCAG
GTGTGTCGTTGTTTTGGCCGTCGTTGCCCTCCTGCTGGCCTGCCGCACCT
CCAAACATGTTCGGTCACCCTGTGTCCGCTATCTTCCTCTCTCGCGTTTT
GGCCCCACCGGACGGGTGGTATCGATGCGCTGCACCTTGCATGCATCCAC
CCTCCCTCGGGAAAAACATCAGTTGAGCAGAAAGACTAACTACTGTTGCT
GTTCGCTTGCCTGCACTTGAATTGGTTTTGCCGTTTCTTCCGGACTGGCT
CACACGCACACGCGCGCGCGCACGCTCAGGCGCAGCGGCCACAGGCGGGC
CGGATGTCGCCGCCCCGCGCCCTGCGGCTACCGCGCCAACTACTGCCACG
CCCCTCCTCCGAACCATTACCGCCCTCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig578:20375..22303+

>mRNA_L-elsbetiae_contig578.14195.1 ID=mRNA_L-elsbetiae_contig578.14195.1|Name=mRNA_L-elsbetiae_contig578.14195.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig578:20375..22303+ (Laminarionema elsbetiae ELsaHSoW15)
GCGACTGGTGCGAAGCCGTCAGCCGCTCGGAGAACACAAGAATCTCACCT
TTCTGCTTTAAGGCGACTGGTGCGAAGCCGTCAGCCGCTCGGAGAACACA
AGAATCTCACCTTTCTGCTTTAAGTTCAGCGTCCGAAACAGCCCAGAATC
ATGTTCGGACACGGGCACCGCAGGGGAGGCACGAAGGAGAGAGTGGCGTC
CATCATAATCCAGCGAATCGTGAGGGGATTCATCGGTCGCAGTTCAGCGT
CCGAAACAGCCCAGAATCATGTTCGGACACGGGCACCGCAGGGGAGGCAC
GAAGGAGAGAGTGGCGTCCATCATAATCCAGCGAATCGTGAGGGGATTCA
TCGGTCGCAGGCGCAGCGGCCACAGGCGGGCCGGATGTCGCCGCCCCGCG
CCCTGCGGCTACCGCGCCAACTACTGCCACGCCCCTCCTCCGAACCATTA
CCGCCCTCCGCGCAGCGGCCACAGGCGGGCCGGATGTCGCCGCCCCGCGC
CCTGCGGCTACCGCGCCAACTACTGCCACGCCCCTCCTCCGAACCATTAC
CGCCCTCC
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