mRNA_L-elsbetiae_contig5779.14190.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5779.14190.1
Unique NamemRNA_L-elsbetiae_contig5779.14190.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5779.14190.1 vs. uniprot
Match: D7FXG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG3_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.320e-24
Identity = 69/114 (60.53%), Postives = 78/114 (68.42%), Query Frame = 1 
Query:  184 ASSIFNSNVSGHSSYSGFSAMSSIHAGFGGSELGSVGEGNSAXXXXXXGTGPAS-----AAWRTPPLGAQKGDPMGGGEDGATPPAHGSTGGALGWGSIMGSGATSGAGVGDGP 510
            +S+IF SNVSGHSSYSGFSAMSS+HA FGGSELG+   G           G        A WRTPPLG+QKGDP   G++   PPAHGSTGGALGWGSIMGSG  +  G G+GP
Sbjct:   56 SSTIFGSNVSGHSSYSGFSAMSSMHA-FGGSELGNSSGGGGMAGVNAAADGXXXXNNNPATWRTPPLGSQKGDP---GDESGNPPAHGSTGGALGWGSIMGSGGAT-RGTGEGP 164
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BLAST of mRNA_L-elsbetiae_contig5779.14190.1 vs. uniprot
Match: A0A6H5L3L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L2_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.150e-24
Identity = 73/118 (61.86%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:  181 DASSIFNSNVSGHSSYSGFSAMSSIHAGFGGSELGSVGEGNSAXXXXXXGTGPAS--------AAWRTPPLGAQKGDPMGGGEDGATPPAHGSTGGALGWGSIMGSGATSGAGVGDGP 510
            D+S+IF SNVSGHSSYSGFSAMSS+HA FGGSELG     NS+      G  PA         A WRTPPLG+QKGDP   G++   PPAHGSTGGALGWGSIMGSG  +  G G+GP
Sbjct: 1615 DSSTIFGSNVSGHSSYSGFSAMSSMHA-FGGSELG-----NSSSGGMAGGNAPADGSSSGNNLATWRTPPLGSQKGDP---GDESGNPPAHGSTGGALGWGSIMGSGGAT-RGTGEGP 1722
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5779.14190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXG3_ECTSI1.320e-2460.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3L2_9PHAE3.150e-2461.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5779contigL-elsbetiae_contig5779:1818..2429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003120.1
Exons2
Model size516
Cds size516
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816619.3902762-CDS-L-elsbetiae_contig5779:1817..19211622816619.3902762-CDS-L-elsbetiae_contig5779:1817..1921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5779 1818..1921 +
1691683689.4834309-CDS-L-elsbetiae_contig5779:1817..19211691683689.4834309-CDS-L-elsbetiae_contig5779:1817..1921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5779 1818..1921 +
1622816619.4064736-CDS-L-elsbetiae_contig5779:2017..24291622816619.4064736-CDS-L-elsbetiae_contig5779:2017..2429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5779 2018..2429 +
1691683689.496885-CDS-L-elsbetiae_contig5779:2017..24291691683689.496885-CDS-L-elsbetiae_contig5779:2017..2429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5779 2018..2429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5779.14190.1prot_L-elsbetiae_contig5779.14190.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5779 1818..2429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5779.14190.1

>prot_L-elsbetiae_contig5779.14190.1 ID=prot_L-elsbetiae_contig5779.14190.1|Name=mRNA_L-elsbetiae_contig5779.14190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MRQRHEQQVYGSRRSSSPGGASSRSRGGGAADGGAGGGGGGGGGGGGGGG
GVSSLGNNHGDASSIFNSNVSGHSSYSGFSAMSSIHAGFGGSELGSVGEG
NSAAAAAAAGTGPASAAWRTPPLGAQKGDPMGGGEDGATPPAHGSTGGAL
GWGSIMGSGATSGAGVGDGPG*
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mRNA from alignment at L-elsbetiae_contig5779:1818..2429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5779.14190.1 ID=mRNA_L-elsbetiae_contig5779.14190.1|Name=mRNA_L-elsbetiae_contig5779.14190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig5779:1818..2429+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCAGCGGCACGAGCAGCAGGTCTACGGCAGCCGCCGGTCGTCGTC
CCCGGGGGGCGCTTCTTCTCGGAGTCGCGGGGGGGGGGCTGCAGACGGAG
GCGCGTACAGCAGCGGAGGGAGCCCTCTCCCGGTGGGCCCGTCGTTGCGG
AGCCCCCCGTCGATACTGCCGGGGGGGCACACGTTCTCGTCGGCGGGCAG
CGGCGGCGGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGCGGTGGCGGAG
TGTCGTCCCTGGGCAACAACCACGGCGACGCGTCGTCCATCTTCAACTCG
AACGTGTCGGGGCACTCGAGCTACTCAGGGTTCTCAGCGATGTCGTCCAT
CCACGCCGGGTTCGGAGGGAGCGAGCTCGGTAGCGTCGGGGAAGGCAACA
GCGCCGCCGCCGCCGCCGCCGCCGGCACTGGTCCCGCCTCGGCGGCGTGG
CGAACACCACCGCTGGGGGCACAGAAGGGGGACCCGATGGGGGGTGGCGA
GGATGGCGCAACCCCCCCGGCGCACGGATCTACCGGGGGCGCGTTAGGCT
GGGGCAGTATCATGGGCAGCGGTGCGACCAGCGGGGCCGGGGTGGGAGAT
GGCCCGGGCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5779:1818..2429+

>mRNA_L-elsbetiae_contig5779.14190.1 ID=mRNA_L-elsbetiae_contig5779.14190.1|Name=mRNA_L-elsbetiae_contig5779.14190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig5779:1818..2429+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCAGCGGCACGAGCAGCAGGTCTACGGCAGCCGCCGGTCGTCGTC
CCCGGGGGGCGCTTCTTCTCGGAGTCGCGGGGGGGGGGCTGCAGACGGAG
GCGCATGCGCCAGCGGCACGAGCAGCAGGTCTACGGCAGCCGCCGGTCGT
CGTCCCCGGGGGGCGCTTCTTCTCGGAGTCGCGGGGGGGGGGCTGCAGAC
GGAGGCGCCGGCGGCGGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGCGG
TGGCGGAGTGTCGTCCCTGGGCAACAACCACGGCGACGCGTCGTCCATCT
TCAACTCGAACGTGTCGGGGCACTCGAGCTACTCAGGGTTCTCAGCGATG
TCGTCCATCCACGCCGGGTTCGGAGGGAGCGAGCTCGGTAGCGTCGGGGA
AGGCAACAGCGCCGCCGCCGCCGCCGCCGCCGGCACTGGTCCCGCCTCGG
CGGCGTGGCGAACACCACCGCTGGGGGCACAGAAGGGGGACCCGATGGGG
GGTGGCGAGGATGGCGCAACCCCCCCGGCGCACGGATCTACCGGGGGCGC
GTTAGGCTGGGGCAGTATCATGGGCAGCGGTGCGACCAGCGGGGCCGGGG
TGGGAGATGGCCCGGGCTGACGGCGGCGGCGGTGGCGGCGGCGGCGGTGG
CGGCGGCGGCGGTGGCGGAGTGTCGTCCCTGGGCAACAACCACGGCGACG
CGTCGTCCATCTTCAACTCGAACGTGTCGGGGCACTCGAGCTACTCAGGG
TTCTCAGCGATGTCGTCCATCCACGCCGGGTTCGGAGGGAGCGAGCTCGG
TAGCGTCGGGGAAGGCAACAGCGCCGCCGCCGCCGCCGCCGCCGGCACTG
GTCCCGCCTCGGCGGCGTGGCGAACACCACCGCTGGGGGCACAGAAGGGG
GACCCGATGGGGGGTGGCGAGGATGGCGCAACCCCCCCGGCGCACGGATC
TACCGGGGGCGCGTTAGGCTGGGGCAGTATCATGGGCAGCGGTGCGACCA
GCGGGGCCGGGGTGGGAGATGGCCCGGGCTGA
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