mRNA_L-elsbetiae_contig5773.14185.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5773.14185.1
Unique NamemRNA_L-elsbetiae_contig5773.14185.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5773.14185.1 vs. uniprot
Match: D8LL97_ECTSI (GPN-loop GTPase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL97_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 1.620e-117
Identity = 166/176 (94.32%), Postives = 173/176 (98.30%), Query Frame = 1
Query:    7 MVRFGQVVVGPPGSGKTTYCLGMCQYMKAIGRDAAVINLDPANHGKGLPYTAAVDIQELVSVEGVMEQFDLGPNGAMLYCLEYLEKNVDWLVEKLDGLTQKYLIFDFPGQQVELFTHCFCVQNLVQRLQKEDVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPHINVLSK 534
            MVRFGQVVVGPPGSGKTTYCLGMCQYMKAIGRD AVINLDPANHG+GLPY AAVDIQELVSVEGVME+F+LGPNGAMLYCLEYLEKNVDWL+EKLDGLTQK+LIFDFPGQ VELFTHCFCVQNLVQRLQK+DVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPH+NVLSK
Sbjct:    1 MVRFGQVVVGPPGSGKTTYCLGMCQYMKAIGRDTAVINLDPANHGEGLPYAAAVDIQELVSVEGVMEEFNLGPNGAMLYCLEYLEKNVDWLMEKLDGLTQKHLIFDFPGQ-VELFTHCFCVQNLVQRLQKDDVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPHVNVLSK 175          
BLAST of mRNA_L-elsbetiae_contig5773.14185.1 vs. uniprot
Match: A0A6H5KRZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ6_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 6.560e-115
Identity = 168/184 (91.30%), Postives = 178/184 (96.74%), Query Frame = 1
Query:    7 MVRFGQVVVGPPGSGKTTYCLGMCQYMKAIGRDAAVINLDPANHGKGLPYTAAVDIQELVSVEGVMEQFDLGPNGAMLYCLEYLEKNVDWLVEKLDGLTQKYLIFDFPGQQVELFTHCFCVQNLVQRLQKEDVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPHINVLSKVSVLYMVG 558
            MVRFGQVVVGPPGSGKTTYCLGMCQYMKAIGRD AVINLDPANHG+GLPY AAVDIQELVSVEGVME+F+LGPNGAMLYCLEYLEKNVDWL+EKLDGLTQK+LIFDFPGQ VELFTHCFCVQNLVQRLQK+DVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPH+NVLSKV ++  +G
Sbjct:    1 MVRFGQVVVGPPGSGKTTYCLGMCQYMKAIGRDTAVINLDPANHGEGLPYAAAVDIQELVSVEGVMEEFNLGPNGAMLYCLEYLEKNVDWLMEKLDGLTQKHLIFDFPGQ-VELFTHCFCVQNLVQRLQKDDVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPHVNVLSKVDLIEQMG 183          
BLAST of mRNA_L-elsbetiae_contig5773.14185.1 vs. uniprot
Match: A0A836C9S8_9STRA (GPN-loop GTPase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9S8_9STRA)

HSP 1 Score: 252 bits (644), Expect = 9.970e-81
Identity = 121/182 (66.48%), Postives = 147/182 (80.77%), Query Frame = 1
Query:   16 FGQVVVGPPGSGKTTYCLGMCQYMKAIGRDAAVINLDPANHGKGLPYTAAVDIQELVSVEGVMEQFDLGPNGAMLYCLEYLEKNVDWLVEKLDGLTQKYLIFDFPGQQ-VELFTHCFCVQNLVQRLQKEDVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPHINVLSKVSVLYMVG 558
            FGQ+VVGPPGSGKTT+C GM QY+ A+GR+ A+INLDPANHG+ LPY  AVDI++LVS+EGVM    LGPNGA++Y +E+LEKN+DWL++KL     KYL+FDFPGQ  VELFTH  C+QN+VQ LQK D RL AVHLVDAYHC + S FIS  L+SLM M+RLELPH+NVLSKV ++   G
Sbjct:   14 FGQIVVGPPGSGKTTFCHGMSQYLTALGREVAIINLDPANHGERLPYKPAVDIEDLVSLEGVMSTLGLGPNGAIIYSIEFLEKNLDWLLDKLRAHRAKYLLFDFPGQAGVELFTHYTCIQNIVQTLQKHDYRLTAVHLVDAYHCSDASRFISVVLVSLMSMMRLELPHVNVLSKVDLIEQYG 195          
BLAST of mRNA_L-elsbetiae_contig5773.14185.1 vs. uniprot
Match: A0A397UA65_9GLOM (GPN-loop GTPase 2 n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UA65_9GLOM)

HSP 1 Score: 228 bits (582), Expect = 8.750e-72
Identity = 111/181 (61.33%), Postives = 141/181 (77.90%), Query Frame = 1
Query:   16 FGQVVVGPPGSGKTTYCLGMCQYMKAIGRDAAVINLDPANHGKGLPYTAAVDIQELVSVEGVMEQFDLGPNGAMLYCLEYLEKNVDWLVEKLDGLTQKYLIFDFPGQQVELFTHCFCVQNLVQRLQKEDVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPHINVLSKVSVLYMVG 558
            FGQVV+GPPGSGKTTYC GM Q++ A GR  +V+NLDPAN    LPY  A+++ +L+++E VME+F LGPNG M+YC+EYLEKN+DWL EKL  L   Y +FDFPGQ VELFTH   V+N+++RLQK D RL  VHLVDA++C +PS +ISA LLSL  ML++ELPHINVLSK+ ++   G
Sbjct:    3 FGQVVIGPPGSGKTTYCNGMQQFLHATGRKVSVVNLDPANDF--LPYECAINMADLITLEEVMEEFKLGPNGGMMYCMEYLEKNIDWLEEKLKSLEDSYFLFDFPGQ-VELFTHHGSVKNIIERLQKLDYRLVTVHLVDAHYCTDPSKYISALLLSLKTMLQIELPHINVLSKIDIIESYG 180          
BLAST of mRNA_L-elsbetiae_contig5773.14185.1 vs. uniprot
Match: A0A7S2GXV3_9STRA (GPN-loop GTPase 2 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GXV3_9STRA)

HSP 1 Score: 223 bits (569), Expect = 2.460e-70
Identity = 107/181 (59.12%), Postives = 138/181 (76.24%), Query Frame = 1
Query:   16 FGQVVVGPPGSGKTTYCLGMCQYMKAIGRDAAVINLDPANHGKGLPYTAAVDIQELVSVEGVMEQFDLGPNGAMLYCLEYLEKNVDWLVEKLDGLTQKYLIFDFPGQQVELFTHCFCVQNLVQRLQKEDVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPHINVLSKVSVLYMVG 558
            F Q+ VGPPGSGKTT+C GM Q+++ IGRD  V+NLDPAN  + LPY  AVD+ ELVS+  VM +  LGPNGA++YC+EYLE+N+DWL++KL+ L +KY++FDFPGQ VELFTHC  V  +V +L   D RL  VHL+DA+ C +P  FI+  LLSL VM+RLELPH+NVLSKV ++   G
Sbjct:   27 FCQLAVGPPGSGKTTFCNGMAQFLEGIGRDVCVVNLDPAN--ENLPYVPAVDLAELVSLPAVMAEMGLGPNGALIYCMEYLEENLDWLLQKLEPLREKYILFDFPGQ-VELFTHCTSVSTIVNKLTAADYRLTVVHLIDAHLCSDPPKFIAGTLLSLTVMIRLELPHVNVLSKVDLIETYG 204          
BLAST of mRNA_L-elsbetiae_contig5773.14185.1 vs. uniprot
Match: A0A397U5Z3_9GLOM (GPN-loop GTPase 2 n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397U5Z3_9GLOM)

HSP 1 Score: 223 bits (568), Expect = 8.470e-70
Identity = 107/175 (61.14%), Postives = 138/175 (78.86%), Query Frame = 1
Query:   22 QVVVGPPGSGKTTYCLGMCQYMKAIGRDAAVINLDPANHGKGLPYTAAVDIQELVSVEGVMEQFDLGPNGAMLYCLEYLEKNVDWLVEKLDGLTQKYLIFDFPGQQVELFTHCFCVQNLVQRLQKEDVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPHINVLSKVSVL 546
            +VV+GPPGSGKTTYC GM Q++ A GR  +V+NLDPAN    LPY  A+++ +L+++E VME+F LGPNG M+YC+EYLEKN+DWL EKL  L   Y +FDFPGQ VELFTH   V+N+++RLQK D RL  VHLVDA++C +PS +ISA LLSL  ML++ELPHINVLSK+ ++
Sbjct:   30 KVVIGPPGSGKTTYCNGMQQFLHATGRKVSVVNLDPANDF--LPYECAINMADLITLEAVMEEFKLGPNGGMMYCMEYLEKNIDWLEEKLKSLEDSYFLFDFPGQ-VELFTHHGSVKNIIERLQKLDYRLVTVHLVDAHYCTDPSKYISALLLSLKTMLQIELPHINVLSKIDII 201          
BLAST of mRNA_L-elsbetiae_contig5773.14185.1 vs. uniprot
Match: A0A4P9WEH8_9FUNG (GPN-loop GTPase 2 n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WEH8_9FUNG)

HSP 1 Score: 223 bits (568), Expect = 1.370e-69
Identity = 106/181 (58.56%), Postives = 139/181 (76.80%), Query Frame = 1
Query:   16 FGQVVVGPPGSGKTTYCLGMCQYMKAIGRDAAVINLDPANHGKGLPYTAAVDIQELVSVEGVMEQFDLGPNGAMLYCLEYLEKNVDWLVEKLDGLTQKYLIFDFPGQQVELFTHCFCVQNLVQRLQKEDVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPHINVLSKVSVLYMVG 558
            FGQVVVGPPGSGKTTYC GM Q+  A  R A ++NLDPAN G  +PYT  +DI EL+++E  ME+F LGPNG ++YC+EYLEKN+DWL+ +L+     Y++FDFPGQ VELFTH   V++++ +LQK + RL AVHLVDA+HC +PS ++S  LLSL  M++LELPHINVLSK+ ++   G
Sbjct:    3 FGQVVVGPPGSGKTTYCHGMAQFYDATKRSAIIVNLDPANDG--MPYTPTIDISELITLEDTMEEFGLGPNGGLIYCMEYLEKNLDWLIGRLNEFKDSYVLFDFPGQ-VELFTHHTAVRSILDKLQKLNYRLCAVHLVDAHHCVDPSKYVSMVLLSLKTMIQLELPHINVLSKIDLMESYG 180          
BLAST of mRNA_L-elsbetiae_contig5773.14185.1 vs. uniprot
Match: A0A0L0HK84_SPIPD (GPN-loop GTPase 2 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HK84_SPIPD)

HSP 1 Score: 221 bits (563), Expect = 2.120e-69
Identity = 104/181 (57.46%), Postives = 141/181 (77.90%), Query Frame = 1
Query:   16 FGQVVVGPPGSGKTTYCLGMCQYMKAIGRDAAVINLDPANHGKGLPYTAAVDIQELVSVEGVMEQFDLGPNGAMLYCLEYLEKNVDWLVEKLDGLTQKYLIFDFPGQQVELFTHCFCVQNLVQRLQKEDVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPHINVLSKVSVLYMVG 558
            FGQ+VVGPPGSGKTTYC GM Q+  A  RD A++NLDPAN  +G+PYT  ++I EL+++E  M++F LGPNG ++YC+EYLEKN+DWL ++L+ + +KY++FD PGQ VELFTH   V+N+V RLQK D RL   HLVDA++C +PS +++  LLSL  M++LELPH+NVLSKV ++   G
Sbjct:    3 FGQIVVGPPGSGKTTYCHGMSQFYAATNRDVAIVNLDPAN--EGMPYTPDINISELITLEDAMKEFGLGPNGGLIYCMEYLEKNMDWLEKRLEDVKEKYILFDCPGQ-VELFTHHNSVKNIVDRLQKLDYRLCCTHLVDAHYCVDPSKYVALLLLSLKTMIQLELPHVNVLSKVDLIESYG 180          
BLAST of mRNA_L-elsbetiae_contig5773.14185.1 vs. uniprot
Match: A0A1S8VK76_9FUNG (GPN-loop GTPase 2 n=2 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VK76_9FUNG)

HSP 1 Score: 221 bits (564), Expect = 6.190e-69
Identity = 107/182 (58.79%), Postives = 142/182 (78.02%), Query Frame = 1
Query:   16 FGQVVVGPPGSGKTTYCLGMCQYMKAIGRDAAVINLDPANHGKGLPYTAAVDIQELVSVEGVMEQFDLGPNGAMLYCLEYLEKNVDWLVEKLDGLTQKYLIFDFPGQQVELFTHCFCVQNLVQRLQKE-DVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPHINVLSKVSVLYMVG 558
            FGQ+VVGPPG GKTTYC G+ Q+ +A  RD A++NLDPAN G  LPY A VDI ELV+++  ME++ LGPNGAM+YC+EYLE N+DWL+EKL+ L +KY++FD PGQ VEL+TH   V+ ++ RL K+ D RL AVHLVD++HC +PS +++  LLSL  M++LELPH+NVLSKV ++   G
Sbjct:    3 FGQIVVGPPGCGKTTYCYGISQFYRATERDVAIVNLDPANDG--LPYKADVDISELVTLDDAMEEYKLGPNGAMIYCMEYLEANIDWLIEKLNPLKEKYILFDCPGQ-VELYTHHQSVKRIIDRLAKDMDFRLCAVHLVDSHHCVDPSKYVAMLLLSLKTMIQLELPHVNVLSKVDLVETYG 181          
BLAST of mRNA_L-elsbetiae_contig5773.14185.1 vs. uniprot
Match: UPI0018855CEA (GPN-loop GTPase 2-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018855CEA)

HSP 1 Score: 221 bits (562), Expect = 6.850e-69
Identity = 109/180 (60.56%), Postives = 140/180 (77.78%), Query Frame = 1
Query:    1 AAMVRFGQVVVGPPGSGKTTYCLGMCQYMKAIGRDAAVINLDPANHGKGLPYTAAVDIQELVSVEGVMEQFDLGPNGAMLYCLEYLEKNVDWLVEKLDGLTQKYLIFDFPGQQVELFTHCFCVQNLVQRLQKEDVRLAAVHLVDAYHCGNPSLFISAALLSLMVMLRLELPHINVLSKVS 540
            AA VRFGQ VVGPPGSGK+TYC GM ++++A GR  AV+NLDPAN    LP+ A VD+ ELV+V  VM+   LGPNGA+LYC+EYLEKNVDWL++KL  L  KY++FDFPGQ VEL+TH   V  L++RL++E++RL AV+LVD+++C +P  F+S  L +L  ML LELPHINVLSK+ 
Sbjct:    2 AAPVRFGQAVVGPPGSGKSTYCGGMQEFLRAAGRQVAVVNLDPANDA--LPFAADVDLAELVTVADVMQTLALGPNGALLYCMEYLEKNVDWLLKKLRPLHDKYILFDFPGQ-VELYTHNAAVPRLLRRLERENLRLTAVNLVDSHYCSDPGKFVSVLLTTLSTMLHLELPHINVLSKID 178          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5773.14185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL97_ECTSI1.620e-11794.32GPN-loop GTPase 2 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KRZ6_9PHAE6.560e-11591.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C9S8_9STRA9.970e-8166.48GPN-loop GTPase 2 n=1 Tax=Tribonema minus TaxID=30... [more]
A0A397UA65_9GLOM8.750e-7261.33GPN-loop GTPase 2 n=2 Tax=Gigaspora TaxID=4873 Rep... [more]
A0A7S2GXV3_9STRA2.460e-7059.12GPN-loop GTPase 2 (Fragment) n=1 Tax=Dictyocha spe... [more]
A0A397U5Z3_9GLOM8.470e-7061.14GPN-loop GTPase 2 n=1 Tax=Gigaspora rosea TaxID=44... [more]
A0A4P9WEH8_9FUNG1.370e-6958.56GPN-loop GTPase 2 n=1 Tax=Blyttiomyces helicus Tax... [more]
A0A0L0HK84_SPIPD2.120e-6957.46GPN-loop GTPase 2 n=2 Tax=Spizellomyces TaxID=4815... [more]
A0A1S8VK76_9FUNG6.190e-6958.79GPN-loop GTPase 2 n=2 Tax=Batrachochytrium salaman... [more]
UPI0018855CEA6.850e-6960.56GPN-loop GTPase 2-like n=1 Tax=Pollicipes pollicip... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5773contigL-elsbetiae_contig5773:3108..4716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.0
Seed ortholog evalue4.5e-92
Seed eggNOG ortholog2880.D8LL97
Preferred nameGPN2
KEGG koko:K06883
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005874,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0008104,GO:0008150,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009987,GO:0010154,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017038,GO:0017111,GO:0022402,GO:0022414,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0034085,GO:0034087,GO:0034504,GO:0034613,GO:0042886,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048285,GO:0048316,GO:0048507,GO:0048608,GO:0048731,GO:0048856,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051641,GO:0051649,GO:0061458,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1902182,GO:1903047
EggNOG free text desc.GTPase activity
EggNOG OGsCOG1100@1,KOG1533@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-27_001810.1
Exons4
Model size573
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5773.14185.1prot_L-elsbetiae_contig5773.14185.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5773 3108..4710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816618.7649832-CDS-L-elsbetiae_contig5773:3107..32341622816618.7649832-CDS-L-elsbetiae_contig5773:3107..3234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5773 3108..3234 -
1691683688.9783473-CDS-L-elsbetiae_contig5773:3107..32341691683688.9783473-CDS-L-elsbetiae_contig5773:3107..3234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5773 3108..3234 -
1622816618.777077-CDS-L-elsbetiae_contig5773:3509..36191622816618.777077-CDS-L-elsbetiae_contig5773:3509..3619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5773 3510..3619 -
1691683688.998322-CDS-L-elsbetiae_contig5773:3509..36191691683688.998322-CDS-L-elsbetiae_contig5773:3509..3619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5773 3510..3619 -
1622816618.7889328-CDS-L-elsbetiae_contig5773:4132..42731622816618.7889328-CDS-L-elsbetiae_contig5773:4132..4273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5773 4133..4273 -
1691683689.0087602-CDS-L-elsbetiae_contig5773:4132..42731691683689.0087602-CDS-L-elsbetiae_contig5773:4132..4273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5773 4133..4273 -
1622816618.801146-CDS-L-elsbetiae_contig5773:4521..47101622816618.801146-CDS-L-elsbetiae_contig5773:4521..4710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5773 4522..4710 -
1691683689.017693-CDS-L-elsbetiae_contig5773:4521..47101691683689.017693-CDS-L-elsbetiae_contig5773:4521..4710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5773 4522..4710 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816618.8134573-UTR-L-elsbetiae_contig5773:4710..47161622816618.8134573-UTR-L-elsbetiae_contig5773:4710..4716Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5773 4711..4716 -
1691683689.02713-UTR-L-elsbetiae_contig5773:4710..47161691683689.02713-UTR-L-elsbetiae_contig5773:4710..4716Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5773 4711..4716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5773.14185.1

>prot_L-elsbetiae_contig5773.14185.1 ID=prot_L-elsbetiae_contig5773.14185.1|Name=mRNA_L-elsbetiae_contig5773.14185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=189bp
MVRFGQVVVGPPGSGKTTYCLGMCQYMKAIGRDAAVINLDPANHGKGLPY
TAAVDIQELVSVEGVMEQFDLGPNGAMLYCLEYLEKNVDWLVEKLDGLTQ
KYLIFDFPGQQVELFTHCFCVQNLVQRLQKEDVRLAAVHLVDAYHCGNPS
LFISAALLSLMVMLRLELPHINVLSKVSVLYMVGIFSM*
back to top

mRNA from alignment at L-elsbetiae_contig5773:3108..4716-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5773.14185.1 ID=mRNA_L-elsbetiae_contig5773.14185.1|Name=mRNA_L-elsbetiae_contig5773.14185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1609bp|location=Sequence derived from alignment at L-elsbetiae_contig5773:3108..4716- (Laminarionema elsbetiae ELsaHSoW15)
GCAGCGATGGTGCGCTTCGGACAAGTCGTGGTGGGGCCGCCAGGCTCCGG CAAGACCACGTACTGTCTCGGAATGTGCCAGTATATGAAGGCGATCGGCA GGGACGCGGCGGTGATTAATCTGGACCCAGCCAATCACGGGAAGGGGTTG CCCTACACCGCCGCGGTGGACATCCAAGAGCTGGTCTCGGTGGAGGTATC TACGTTGTATGTTGTATGGTGTGCAACCAGCTGGTCTATCATGCAGGCCC TGACCTTCGTGTCGATTTTGAATCACCAGGCAATATCCCTGCTGTCTGCA TGTATGTACATTCCACAGCTGCTACAGACTAGTCTCTCGCTGTTTGCTTC TCCACACACAAAATTTGAATTACTGCATGACCCATCACCGCATCACTTGA AACGTGGGAGCAGCAGACAATCTTTGCTGCCCGGCCTGCGCAGGGAGTCA TGGAGCAGTTTGACTTGGGTCCGAACGGGGCCATGCTGTACTGCCTGGAG TACCTTGAGAAGAACGTGGACTGGCTTGTGGAGAAGCTGGACGGGCTGAC CCAAAAGTACCTCATCTTCGACTTCCCAGGACAGGTGGAGATTGCTGACT TTGTGCTGACTATATACTACAAACAAAGTTTATCTAGTGTGGGTGTCGTT GGCGTTGTAGACTGACTCTATGTTGTCTACTGCACGTGCAGAAGTTAGTC TTGCATGTATGCTGTACTCTGTATATACATAGACCAGGTCCGACGTGGAG TTATTTTTGTTGCTCTGCTCACATCAACTACATTAATCTCGAAAAGTGTC ATCATCACGCGCGAGAATGGGTCTGTACGACCTGTTTTACAGGGAATCGC TGTGGTTGCAAGCTCCAACATACGTATGTAGTGGTTGCAAGCTACAAGTA CAGGTTACACTCTTTTTCGTATTGTCCCCTTTCAAACTAGACTAATTTTA CGAACGAATCGTGGACTAGTCGTACGGTGGCGGAACACAATAGAAGTTGC GTTCATCTCCCCGTGTTATAATATATGCTGCCGTGTAACCCTCCGTTCTT TTATGGAGCTGACCTTCTCACCACATGCAACCGGACGCACGACGAAGCAG GTAGAGCTGTTCACGCACTGCTTCTGTGTCCAAAACTTGGTGCAGCGGCT GCAGAAGGAGGATGTCAGGCTGGCCGCAGTTCATCTGGTCGACGCCTATC ACTGCGGGTGAGGGGGTGTCACTAAGCCTTAGGGCGCGCGCGGAGTAGAC GTGCGGCAATGCGGACCGGACCGACTGCAGGCTGCTTGGATATCAAAGGC GCTTTGGCCCACCAGGTCGCGCCTGGCACCTTCGAGCATGTCTCGCTCCC AGCACATCCAGCCGAGATCTCCGCCTAAACGTGTACATGCGTCTGTTACC ACCGCTGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT TTCTCTTTCTCTCTCGAACTCGAAACACGCAGGAATCCGTCTCTGTTCAT CTCCGCCGCGCTGTTGTCGCTCATGGTCATGTTGAGGCTTGAGCTGCCTC ACATCAACGTTCTCTCCAAGGTGAGCGTGCTATATATGGTAGGTATTTTC TCCATGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5773:3108..4716-

>mRNA_L-elsbetiae_contig5773.14185.1 ID=mRNA_L-elsbetiae_contig5773.14185.1|Name=mRNA_L-elsbetiae_contig5773.14185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1134bp|location=Sequence derived from alignment at L-elsbetiae_contig5773:3108..4716- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCGCTTCGGACAAGTCGTGGTGGGGCCGCCAGGCTCCGGCAAGAC
CACGTACTGTCTCGGAATGTGCCAGTATATGAAGGCGATCGGCAGGGACG
CGGCGGTGATTAATCTGGACCCAGCCAATCACGGGAAGGGGTTGCCCTAC
ACCGCCGCGGTGGACATCCAAGAGCTGGTCTCGGTGGAGATGGTGCGCTT
CGGACAAGTCGTGGTGGGGCCGCCAGGCTCCGGCAAGACCACGTACTGTC
TCGGAATGTGCCAGTATATGAAGGCGATCGGCAGGGACGCGGCGGTGATT
AATCTGGACCCAGCCAATCACGGGAAGGGGTTGCCCTACACCGCCGCGGT
GGACATCCAAGAGCTGGTCTCGGTGGAGGGAGTCATGGAGCAGTTTGACT
TGGGTCCGAACGGGGCCATGCTGTACTGCCTGGAGTACCTTGAGAAGAAC
GTGGACTGGCTTGTGGAGAAGCTGGACGGGCTGACCCAAAAGTACCTCAT
CTTCGACTTCCCAGGACAGGGAGTCATGGAGCAGTTTGACTTGGGTCCGA
ACGGGGCCATGCTGTACTGCCTGGAGTACCTTGAGAAGAACGTGGACTGG
CTTGTGGAGAAGCTGGACGGGCTGACCCAAAAGTACCTCATCTTCGACTT
CCCAGGACAGCAGGTAGAGCTGTTCACGCACTGCTTCTGTGTCCAAAACT
TGGTGCAGCGGCTGCAGAAGGAGGATGTCAGGCTGGCCGCAGTTCATCTG
GTCGACGCCTATCACTGCGGCAGGTAGAGCTGTTCACGCACTGCTTCTGT
GTCCAAAACTTGGTGCAGCGGCTGCAGAAGGAGGATGTCAGGCTGGCCGC
AGTTCATCTGGTCGACGCCTATCACTGCGGGAATCCGTCTCTGTTCATCT
CCGCCGCGCTGTTGTCGCTCATGGTCATGTTGAGGCTTGAGCTGCCTCAC
ATCAACGTTCTCTCCAAGGTGAGCGTGCTATATATGGTAGGTATTTTCTC
CATGTGAGAATCCGTCTCTGTTCATCTCCGCCGCGCTGTTGTCGCTCATG
GTCATGTTGAGGCTTGAGCTGCCTCACATCAACGTTCTCTCCAAGGTGAG
CGTGCTATATATGGTAGGTATTTTCTCCATGTGA
back to top