mRNA_L-elsbetiae_contig5767.14177.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5767.14177.1
Unique NamemRNA_L-elsbetiae_contig5767.14177.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5767.14177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5767contigL-elsbetiae_contig5767:8876..9393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size518
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5767.14177.1prot_L-elsbetiae_contig5767.14177.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5767 9016..9354 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816617.9747884-UTR-L-elsbetiae_contig5767:8875..90151622816617.9747884-UTR-L-elsbetiae_contig5767:8875..9015Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5767 8876..9015 +
1691683688.3125207-UTR-L-elsbetiae_contig5767:8875..90151691683688.3125207-UTR-L-elsbetiae_contig5767:8875..9015Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5767 8876..9015 +
1622816618.0003877-UTR-L-elsbetiae_contig5767:9354..93931622816618.0003877-UTR-L-elsbetiae_contig5767:9354..9393Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5767 9355..9393 +
1691683688.3330016-UTR-L-elsbetiae_contig5767:9354..93931691683688.3330016-UTR-L-elsbetiae_contig5767:9354..9393Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5767 9355..9393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816617.9903903-CDS-L-elsbetiae_contig5767:9015..93541622816617.9903903-CDS-L-elsbetiae_contig5767:9015..9354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5767 9016..9354 +
1691683688.3232787-CDS-L-elsbetiae_contig5767:9015..93541691683688.3232787-CDS-L-elsbetiae_contig5767:9015..9354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5767 9016..9354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5767.14177.1

>prot_L-elsbetiae_contig5767.14177.1 ID=prot_L-elsbetiae_contig5767.14177.1|Name=mRNA_L-elsbetiae_contig5767.14177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MLQPQQQAGLVYGNLFTCWESGCAGRQAGRREKPRKMAATPTTEIGGKDG
LGALYDCALSKEARLSSHHSQLVIVAHQRHHGGWMGHSCSDRTKTFKAST
ARAAQPACHRCS*
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mRNA from alignment at L-elsbetiae_contig5767:8876..9393+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5767.14177.1 ID=mRNA_L-elsbetiae_contig5767.14177.1|Name=mRNA_L-elsbetiae_contig5767.14177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=518bp|location=Sequence derived from alignment at L-elsbetiae_contig5767:8876..9393+ (Laminarionema elsbetiae ELsaHSoW15)
CGTTCAGGACACAAGGCGAGTGGAGAGTTGGGGGTCAATGGGATGTAGTG
TCACGAGAGGTGACGGCGGGAGAGACGGGGCTGTTCTAGGATGGCAAAGG
GGCTTGCAGGTTTCCGTCCGAAGGGCCCCCACCACGCGACATGTTGCAAC
CTCAACAGCAAGCAGGCCTTGTATACGGTAACTTATTCACCTGTTGGGAG
TCAGGTTGTGCAGGCAGGCAGGCAGGCAGGCGTGAAAAACCGCGAAAAAT
GGCCGCAACGCCAACGACGGAAATAGGGGGAAAGGACGGGCTGGGGGCCC
TGTATGACTGCGCTTTGTCGAAGGAAGCACGACTCTCCTCGCATCACAGC
CAGCTTGTCATCGTTGCTCATCAGAGACACCACGGGGGATGGATGGGCCA
CAGCTGTAGTGACCGAACGAAAACATTCAAGGCATCTACGGCACGAGCAG
CGCAGCCAGCTTGCCATCGTTGCTCGTGAGAGGCACCACAACAGTATGTC
GTGAGCAAACGAAAACAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5767:8876..9393+

>mRNA_L-elsbetiae_contig5767.14177.1 ID=mRNA_L-elsbetiae_contig5767.14177.1|Name=mRNA_L-elsbetiae_contig5767.14177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig5767:8876..9393+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCAACCTCAACAGCAAGCAGGCCTTGTATACGGTAACTTATTCAC
CTGTTGGGAGTCAGGTTGTGCAGGCAGGCAGGCAGGCAGGCGTGAAAAAC
CGCGAAAAATGGCCGCAACGCCAACGACGGAAATAGGGGGAAAGGACGGG
CTGGGGGCCCTGTATGACTGCGCTTTGTCGAAGGAAGCACGACTCTCCTC
GCATCACAGCCAGCTTGTCATCGTTGCTCATCAGAGACACCACGGGGGAT
GGATGGGCCACAGCTGTAGTGACCGAACGAAAACATTCAAGGCATCTACG
GCACGAGCAGCGCAGCCAGCTTGCCATCGTTGCTCGTGAATGTTGCAACC
TCAACAGCAAGCAGGCCTTGTATACGGTAACTTATTCACCTGTTGGGAGT
CAGGTTGTGCAGGCAGGCAGGCAGGCAGGCGTGAAAAACCGCGAAAAATG
GCCGCAACGCCAACGACGGAAATAGGGGGAAAGGACGGGCTGGGGGCCCT
GTATGACTGCGCTTTGTCGAAGGAAGCACGACTCTCCTCGCATCACAGCC
AGCTTGTCATCGTTGCTCATCAGAGACACCACGGGGGATGGATGGGCCAC
AGCTGTAGTGACCGAACGAAAACATTCAAGGCATCTACGGCACGAGCAGC
GCAGCCAGCTTGCCATCGTTGCTCGTGA
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